mRNA_H-elongata_contig59853.13507.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI) HSP 1 Score: 441 bits (1134), Expect = 7.480e-148 Identity = 217/314 (69.11%), Postives = 251/314 (79.94%), Query Frame = 1
Query: 1 FTGRGGDDVGITGSDLLSGTGELTDLGSAFVETYQDLQKCGGITTSMTISXXXXXXXXXDSFT-TSIGLTDVDPDASEVTNVVISNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFEGNTDSLSRTSKWTPTTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQFAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGWHGGSDGTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRPS 939
FTGRGGDDVG+TGSDLLS TG LT +GS FVETYQDLQ+C +T+S++ + T G+TDVDP+A+E+TNVVI NLGG GTY +VV M G + C +AACV++EVSVSG L+PFDE V+VAFRGPMNI+NIVWFEG DSLS+TS WTP TSNNLVFM N GG T C+G WTICGG+SQSY+DE+G C +EP QF+GVLG D+ V I +STEC D +CGFYR TGMEGW GG DG+KVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVD+ADM+ TTVYDFKGTG+PGH KYF RPS
Sbjct: 346 FTGRGGDDVGVTGSDLLSATGVLTKVGSVFVETYQDLQRCEDMTSSLSTGILPSSTPTNIAEPGTMTGMTDVDPEATEITNVVIGNLGGTGTYMDVVGMDPGADMHCPSTEAACVQKEVSVSGTLAPFDEAVSVAFRGPMNIHNIVWFEGEADSLSKTSAWTPVTSNNLVFMTNQGGYTECSGEWTICGGSSQSYADETGSSCASEPKQFSGVLGGDQGVNIMTSTECADDSTCGFYRDTGMEGWSGGLDGSKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDHADMMFTTVYDFKGTGAPGHGKYFNRPS 659
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI) HSP 1 Score: 196 bits (497), Expect = 6.310e-53 Identity = 111/247 (44.94%), Postives = 142/247 (57.49%), Query Frame = 1
Query: 208 DVDPDASEVTNVVISNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFEGNTD-SLSRTSKWTP-TTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQFAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGWHGGSDGTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTT---VYDFKGTGSPGHDKYFLR 933
DVDP A+ +TN VI+N+GG G Y +VV M GE + C D ACVKEEV V+G L+PFDE V+V+FRGPMN+YNI WFEG D +L RT+ WTP +N+ FMNN GG + C+G W+ICGGNSQS++D + ++RTAQYGCNCRGAGGNGGCGEFDI+E ++G Y+DML TT Y G+ G + +L+
Sbjct: 359 DVDPLATVITNAVIANVGGAGYYDDVVDMIDGENMNCPSYDDACVKEEVCVNGGLAPFDE-VSVSFRGPMNLYNIAWFEGTADGTLERTTSWTPGELGDNIAFMNNRGGLSDCSGEWSICGGNSQSFADAT------------------------------------------------------ILRTAQYGCNCRGAGGNGGCGEFDIIEGIVGNKYSDMLFTTEKTTYAAIFRGNSGDSESYLQ 550
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: UPI0004416550 (hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004416550) HSP 1 Score: 182 bits (462), Expect = 2.750e-51 Identity = 110/265 (41.51%), Postives = 150/265 (56.60%), Query Frame = 1
Query: 223 ASEVTNVVISNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFE-GNTDSLS--RTSKWTP-TTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQ-FAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGWHGG------------SDGT---------KVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRPS 939
+ +T V +++GG+G+YQ V + G CS + +CVK +VSG L+PFDED+ V RGPMN+YNI ++ NT S + RTS W ++NLVFMNN GG G +G W+ICGG SQSY+ P Q + + + +EV I ++TEC + GFYRGT GW G SD +VVR+AQYGCNCRG GG GGCGE D+VE ++ D+ + ++ +Y FKG G YF RP+
Sbjct: 35 SGSLTAVRYTHVGGDGSYQQVTDLVPGTFPTCS-ANPSCVKTTKTVSGNLAPFDEDLTVVMRGPMNVYNIAVYQPDNTTSATWKRTSSWASGNAAHNLVFMNNNGG--GASGEWSICGGASQSYASSDFSSAAASPKQTYGSYISASDEVNIMTATECNGSNCEGFYRGTSNLGWAGSKMFVFEFDMPSDSDSVTPAIWALNGQVVRSAQYGCNCRGEGGEGGCGEIDLVENLVDADH-NQGISEIYSFKGATGTGTGNYFARPT 295
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: A0A165PHX7_9AGAM (Uncharacterized protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165PHX7_9AGAM) HSP 1 Score: 178 bits (451), Expect = 1.060e-49 Identity = 104/257 (40.47%), Postives = 146/257 (56.81%), Query Frame = 1
Query: 250 SNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFE----GNTDSLSRTSKW-TPTTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPT--QFAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGW-------------HGGSD-------GTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRPS 939
+N+GG G+YQ V ++ G CS + +C++ +VSG L+PF+ED+ + FRGPM ++N+ ++ T + S+ S W T +NLVFMNN GGST +G W+IC G+SQSY++ + PT +AG L +EV I + ECT GF+RGT EGW GGS ++VR+AQYGCNCRG G +GGCGE D+VE + G D + ++ VY FKG G YF RP+
Sbjct: 39 TNVGGTGSYQQVTNIIPGTFPTCS-ANPSCIQTTKTVSGSLAPFNEDLTMVFRGPMTLHNVAVYQPANSSGTSAWSKVSSWGAGGTGSNLVFMNNKGGST--SGTWSICAGSSQSYANAAFSDAAASPTGLSYAGDLPDGQEVNIMTDIECTASSCDGFFRGTANEGWADSKMFIMEVEMPSGGSTPPAIWALNAQIVRSAQYGCNCRGVGADGGCGELDVVEVISGQDQ-NQGISEVYSFKGATGTGSSAYFTRPT 291
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: A0A1H7X6D6_STIAU (Glycine-rich protein domain n=1 Tax=Stigmatella aurantiaca TaxID=41 RepID=A0A1H7X6D6_STIAU) HSP 1 Score: 176 bits (447), Expect = 7.220e-49 Identity = 109/272 (40.07%), Postives = 140/272 (51.47%), Query Frame = 1
Query: 214 DPDASEVTNVVISNLGGNGTYQNVVSMASGE-GLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFEGNTDSLSRTSKWTPTTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQFAGVLGSDEEVQIASSTECT---DYDSCGFYRGTGMEGWHGGSD---------------------------GTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRP 936
D + V+ + I N+GG G YQ V +M G G C AC K +VSG L+PF+E++ V FRGPM +Y+I + + + RTS W S NL F NNLGG TG +G WT+CGGNSQSY+ + PT+F G LG+ E+ I S C D CGFYRG GW G +VVRTAQYGCNCRG G GGCGE D+ E + G + +T+Y F+G G + YF+RP
Sbjct: 69 DGTGTSVSTMSILNVGGTGAYQRVTNMLPGVWGQSCPSN--ACQKATTNVSGALAPFNEEMTVNFRGPMELYDIAVYRPDATAWKRTSSWNRCGSTNLTFFNNLGG-TG-SGEWTLCGGNSQSYASADAKTAVAAPTRFTGTLGNRVEMNILSDQACVGTGDASECGFYRGVTRHGWAGAKLFAIRARMPRYTGPITEYYDDVPAIWMLNARVVRTAQYGCNCRGMGSPGGCGELDVAEVLHG-GHPMHATSTIYSFEGATGSGPN-YFMRP 334
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: A0A250IPV1_9DELT (Uncharacterized protein n=2 Tax=Melittangium boletus TaxID=83453 RepID=A0A250IPV1_9DELT) HSP 1 Score: 176 bits (447), Expect = 8.120e-49 Identity = 111/272 (40.81%), Postives = 139/272 (51.10%), Query Frame = 1
Query: 214 DPDASEVTNVVISNLGGNGTYQNVVSMASGE-GLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFEGNTDSLSRTSKWTPTTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQFAGVLGSDEEVQIASSTECT---DYDSCGFYRGTGMEGWHGGSD---------------------------GTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRP 936
D + V+ + I N+GG G+YQ V +M G G C AC K SVSG L+PF+E++ V FRGPM +Y+I + + S SR S W S NL F NNLGG TG +G WT+CGGNSQSY+ G+ PT+F G L + E+ I S C D CGFYRG GW G +VVRTAQYGCNCRG G GGCGE D+ E + G +T+Y F+G G + YF RP
Sbjct: 74 DGTGTPVSTMSILNVGGTGSYQRVTNMLPGVWGQTCPSN--ACQKATTSVSGALAPFNEEMTVNFRGPMELYDIAVYRPGSGSWSRVSSWNRCGSTNLTFFNNLGG-TG-SGEWTLCGGNSQSYASADGKTAAAAPTRFTGSLANRTEMNILSDQPCIGTGDSSECGFYRGVTRHGWGGAKIFAIRARMPRYTGPKTEYYDDVPAIWMLNARVVRTAQYGCNCRGMGSPGGCGELDVAEVLHGESPLHAT-STIYSFEGATGSGPN-YFQRP 339
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: S7RLB6_GLOTA (Uncharacterized protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7RLB6_GLOTA) HSP 1 Score: 176 bits (445), Expect = 8.200e-49 Identity = 106/262 (40.46%), Postives = 153/262 (58.40%), Query Frame = 1
Query: 232 VTNVVISNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFE-GNTDSL--SRTSKWTPTTS-NNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQ--FAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGW-------------HGGSD-------GTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRPS 939
+T++ +N+GG+G+YQ V +M G C D + +C+++ +SG L+PF+ED+ + FRGPMN++NI ++ GN+ S+ S W S +NLVFMNN GGST +G W+ICGG+SQSY++ + P+ + G L +EV I +ST CT GF+RGT GW GGS ++VR+AQYGCNCRG G GGCGE D+VE + G D + ++ +Y FKG G D +F RP+
Sbjct: 36 LTSLKYTNVGGSGSYQQVTNMLPGTFPTC-DVNPSCIQQPKQISGNLAPFNEDLTMVFRGPMNLHNIAVYQPGNSTGATWSQVSSWAAGGSGSNLVFMNNKGGST--SGEWSICGGSSQSYANGAFTDAAASPSASTYTGNLPDGQEVNIMTSTACTSSTCDGFFRGTANLGWADSKMFVMEVEMPSGGSTPPAIWALNGQIVRSAQYGCNCRGQGSPGGCGELDVVEVISGQDQ-NQGISEIYSFKGATGTGSDAFFSRPA 293
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: A0A165D0F9_9APHY (Uncharacterized protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165D0F9_9APHY) HSP 1 Score: 175 bits (443), Expect = 8.680e-49 Identity = 105/263 (39.92%), Postives = 150/263 (57.03%), Query Frame = 1
Query: 232 VTNVVISNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFEGNTDSLS---RTSKWTPT-TSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGC--TTEPTQFAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGWHGG-----------SDGT----------KVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRPS 939
+T + + +G +G+Y + + +GE C+ D CV +VSG L+PFD++V +AFRGPMNIYN+ ++ + S S + S W +NNLVFMNN GG +GVW++CGG+SQSY++ + +G + E T +G L EE+ I +ST C + + GF RGT GW G SDG +VVR AQYGCNCRG GG+GGCGE D++E + D ++ +Y FKG G +YF RP+
Sbjct: 7 ITALKYTGVGASGSYNQITDLVAGEWPSCTITDF-CVGSTKAVSGALAPFDDEVTMAFRGPMNIYNVAVYQPSNQSASTWSQVSSWASGGDANNLVFMNNNGGDG--SGVWSVCGGSSQSYANSTWDGAAASAEGTP-SGSLADGEEINIMTSTTCEELECDGFSRGTSNHGWTGSKMIVMTFDMPDSDGANIPAIWALNAQVVRAAQYGCNCRGEGGDGGCGELDVLEVLANSD-TTQAISEIYSFKGATGTGSAEYFARPT 264
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: E3G0R9_STIAD (Lipoprotein n=3 Tax=Stigmatella TaxID=40 RepID=E3G0R9_STIAD) HSP 1 Score: 176 bits (446), Expect = 1.140e-48 Identity = 108/272 (39.71%), Postives = 142/272 (52.21%), Query Frame = 1
Query: 214 DPDASEVTNVVISNLGGNGTYQNVVSMASGE-GLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFEGNTDSLSRTSKWTPTTSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQFAGVLGSDEEVQIASSTECT---DYDSCGFYRGTGMEGWHGGSD---------------------------GTKVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRP 936
D + V+ + I N+GG G+YQ V +M G G C AC K +VSG L+PF+E++ V FRGPM +Y+I ++ + S R S W S NL F NNLGG TG +G WT+CGGNSQSY+ + PT+F G LG+ E+ I + C D CGFYRG GW G +VVRTAQYGCNCRG G GGCGE D+ E + G ++ +T+Y F+G G + YF+RP
Sbjct: 74 DGTGTSVSTMSILNVGGTGSYQRVTNMLPGVWGQSCPSN--ACQKATSNVSGALAPFNEELTVNFRGPMELYDIAVYKPDAASWKRVSSWNRCASTNLTFFNNLGG-TG-SGEWTLCGGNSQSYASADAKTAVAAPTRFTGTLGNRVEMNILADQPCVGTGDASECGFYRGVTRHGWAGAKLFAIRARMPRYTGPITEYYDDVPAIWMLNARVVRTAQYGCNCRGMGSPGGCGELDVAEVLHG-EHPMHATSTIYSFEGATGSGPN-YFMRP 339
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Match: A0A1X6MZQ9_9APHY (Uncharacterized protein n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6MZQ9_9APHY) HSP 1 Score: 174 bits (441), Expect = 2.900e-48 Identity = 108/263 (41.06%), Postives = 150/263 (57.03%), Query Frame = 1
Query: 232 VTNVVISNLGGNGTYQNVVSMASGEGLVCSDEDAACVKEEVSVSGPLSPFDEDVAVAFRGPMNIYNIVWFE-GNTDSL--SRTSKWTPT-TSNNLVFMNNLGGSTGCNGVWTICGGNSQSYSDESGEGCTTEPTQ-FAGVLGSDEEVQIASSTECTDYDSCGFYRGTGMEGWHGG------------SDGT----------KVVRTAQYGCNCRGAGGNGGCGEFDIVEAVIGVDYADMLLTTVYDFKGTGSPGHDKYFLRPS 939
+T + + +GG+G+YQ V +M +G C+ + +C + VSG L+PFD+++ VAFRGP+N+ NI ++ GN+ + S+TS W +NNLVFMNN+GG G +G WTICGG SQSY++ + +G PT +G L E+ I ++ C D GF RGT GW G SD + +VVR AQYGCNCRG GGNGGCGE DI+E + G D D ++ +Y FKG G F RP+
Sbjct: 30 LTGIKYTGVGGSGSYQEVTNMVAGTWPSCT-ANPSCEQSPKEVSGNLAPFDDEITVAFRGPLNVKNIAVYQPGNSSAATWSQTSSWAAGGDTNNLVFMNNMGG--GLSGEWTICGGASQSYANGTWDGSAASPTTGTSGYLPETMEINIMTNETCADSACSGFSRGTANHGWSGSKLMVLTFNMPPSSDASNVPAIWALNAQVVRAAQYGCNCRGEGGNGGCGELDILEVIAGSDI-DNAISEIYSFKGATGSGASA-FPRPT 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59853.13507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59853.13507.1 >prot_H-elongata_contig59853.13507.1 ID=prot_H-elongata_contig59853.13507.1|Name=mRNA_H-elongata_contig59853.13507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp FTGRGGDDVGITGSDLLSGTGELTDLGSAFVETYQDLQKCGGITTSMTISback to top mRNA from alignment at H-elongata_contig59853:199..3396+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59853.13507.1 ID=mRNA_H-elongata_contig59853.13507.1|Name=mRNA_H-elongata_contig59853.13507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3198bp|location=Sequence derived from alignment at H-elongata_contig59853:199..3396+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59853:199..3396+ >mRNA_H-elongata_contig59853.13507.1 ID=mRNA_H-elongata_contig59853.13507.1|Name=mRNA_H-elongata_contig59853.13507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig59853:199..3396+ (Himanthalia elongata Himel1 dioecious)back to top |