mRNA_H-elongata_contig59851.13506.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59851.13506.1
Unique NamemRNA_H-elongata_contig59851.13506.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.140e-38
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            QV+E  PFGKTLVLDG  QSAQLDEFIYHE+LVHPAMLAH +PKRVYIGGGGELATAREVLRHKSVE CVMVDLD+
Sbjct:   12 QVVETAPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDK 87          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A813BDH4_9DINO (SpeE protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BDH4_9DINO)

HSP 1 Score: 122 bits (306), Expect = 2.920e-32
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLD 225
            Q++   PFGKTLVLDG  QSAQ DEF+YHESLVHPAMLAH   K V+IGGGGELATAREVLRH  VE CVMVD+D
Sbjct:   54 QIVHTAPFGKTLVLDGKTQSAQADEFVYHESLVHPAMLAHGKAKSVFIGGGGELATAREVLRHTGVEKCVMVDID 128          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A7S1CPT3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPT3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.070e-32
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            Q+IE  PFGKTLVLDG  QSA  DE++YHESLVHPAMLAH++PK V++GGGGE AT RE+LRH SVE CVMVD+D+
Sbjct:   45 QIIETGPFGKTLVLDGKTQSALADEYVYHESLVHPAMLAHANPKSVFVGGGGEFATTREILRHPSVEKCVMVDIDK 120          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A7S4B7S3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B7S3_CHRCT)

HSP 1 Score: 117 bits (293), Expect = 4.530e-32
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    4 VIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            ++E+ PFG+ L++DG+IQS+Q DEF+YHE LVHPA+LAH +PK VYIGGGGE +TAREVLRH +VE CVMVD+D+
Sbjct:   46 LVELEPFGRVLMIDGLIQSSQSDEFVYHECLVHPALLAHPNPKSVYIGGGGEGSTAREVLRHSTVERCVMVDIDK 120          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.760e-32
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            QVI+  PFGKTLVLDG  QSA  DEF+YHE+LVHPAML H +PKRV+IGGGGE ATARE+LRH+SVE C+MVDLD+
Sbjct:   77 QVIDCAPFGKTLVLDGKSQSAAGDEFVYHEALVHPAMLLHGNPKRVFIGGGGEGATAREMLRHRSVEKCIMVDLDK 152          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A2R5G8N6_9STRA (Spermidine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8N6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.840e-32
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            QVIE T FG+TLV+DG  QSA+ DE IYHESLVHPAML H  PK+V+IGGGGE ATAREVLRH SVE CVM+D+DE
Sbjct:  121 QVIETTQFGRTLVMDGQTQSAEADEHIYHESLVHPAMLLHKSPKKVFIGGGGEFATAREVLRHSSVERCVMIDIDE 196          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A7S3JWK0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWK0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.910e-32
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLD 225
            Q+IE  PFGKTLVLDG  QSA  DEF+YHESLVH AML H DPKRVYIGGGGELATAREVLRH SV+  VMVDLD
Sbjct:   46 QIIETKPFGKTLVLDGKTQSALGDEFVYHESLVHAAMLWHDDPKRVYIGGGGELATAREVLRHASVQEVVMVDLD 120          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: R1EEV0_EMIHU (PABS domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EEV0_EMIHU)

HSP 1 Score: 120 bits (301), Expect = 2.110e-31
Identity = 52/74 (70.27%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    4 VIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLD 225
            ++++ PFG+TL++DG+IQS Q DEF+YHE+LVHPA+LAH +P+ VYIGGGGE +TAREVLRHKSVE CVMVD+D
Sbjct:   35 LVDLEPFGRTLMIDGLIQSTQCDEFVYHEALVHPALLAHPNPRSVYIGGGGEGSTAREVLRHKSVERCVMVDID 108          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A0P1AJP4_PLAHL (Spermidine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJP4_PLAHL)

HSP 1 Score: 120 bits (301), Expect = 2.590e-31
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            Q+IE   FGKTLVLDG  QSA+LDE IYHE+LVHPAMLAH +PK V+IGGGGE ATAREVL+HKSVE  VMVD+DE
Sbjct:   54 QIIETYSFGKTLVLDGKTQSAKLDEAIYHETLVHPAMLAHKNPKTVFIGGGGEFATAREVLKHKSVEKVVMVDIDE 129          
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A5A8EFJ0_CAFRO (PABS domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EFJ0_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 2.630e-31
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
            Q++E  PFGKTLVLDG  QSA+ DE +YHESLVHPA+L H +PK VYIGGGGE ATARE+LRHK+VE CVMVD+DE
Sbjct:   36 QIVETAPFGKTLVLDGKSQSAKFDEPVYHESLVHPALLMHPNPKSVYIGGGGEGATAREILRHKTVEKCVMVDIDE 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT45_ECTSI1.140e-3886.84Spermidine/spermine synthase n=1 Tax=Ectocarpus si... [more]
A0A813BDH4_9DINO2.920e-3276.00SpeE protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1CPT3_9STRA4.070e-3272.37Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4B7S3_CHRCT4.530e-3268.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A836C836_9STRA6.760e-3275.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A2R5G8N6_9STRA6.840e-3275.00Spermidine synthase n=1 Tax=Hondaea fermentalgiana... [more]
A0A7S3JWK0_9STRA6.910e-3280.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
R1EEV0_EMIHU2.110e-3170.27PABS domain-containing protein n=2 Tax=Emiliania h... [more]
A0A0P1AJP4_PLAHL2.590e-3176.32Spermidine synthase n=1 Tax=Plasmopara halstedii T... [more]
A0A5A8EFJ0_CAFRO2.630e-3173.68PABS domain-containing protein n=1 Tax=Cafeteria r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59851contigH-elongata_contig59851:2804..3608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue6e-29
Seed eggNOG ortholog2880.D7FT45
Preferred nameSPS1
KEGG koko:K18787
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0009888,GO:0009914,GO:0009926,GO:0009987,GO:0010087,GO:0010089,GO:0010487,GO:0010817,GO:0016740,GO:0016765,GO:0016768,GO:0030154,GO:0032502,GO:0044424,GO:0044464,GO:0048759,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:1905177
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
EC2.5.1.79
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionspermidine/spermine synthase
Ec32 orthologEc-04_002790.1
Exons2
Model size228
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59851.13506.1prot_H-elongata_contig59851.13506.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59851 2816..3608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.7696896-UTR-H-elongata_contig59851:2803..28151622930968.7696896-UTR-H-elongata_contig59851:2803..2815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59851 2804..2815 +
1691679644.4932249-UTR-H-elongata_contig59851:2803..28151691679644.4932249-UTR-H-elongata_contig59851:2803..2815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59851 2804..2815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.7834098-CDS-H-elongata_contig59851:2815..29381622930968.7834098-CDS-H-elongata_contig59851:2815..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59851 2816..2938 +
1691679644.5064123-CDS-H-elongata_contig59851:2815..29381691679644.5064123-CDS-H-elongata_contig59851:2815..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59851 2816..2938 +
1622930968.8018813-CDS-H-elongata_contig59851:3515..36081622930968.8018813-CDS-H-elongata_contig59851:3515..3608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59851 3516..3608 +
1691679644.514821-CDS-H-elongata_contig59851:3515..36081691679644.514821-CDS-H-elongata_contig59851:3515..3608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59851 3516..3608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59851.13506.1

>prot_H-elongata_contig59851.13506.1 ID=prot_H-elongata_contig59851.13506.1|Name=mRNA_H-elongata_contig59851.13506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGEL
ATAREVLRHKSVESCVMVDLDE
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mRNA from alignment at H-elongata_contig59851:2804..3608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59851.13506.1 ID=mRNA_H-elongata_contig59851.13506.1|Name=mRNA_H-elongata_contig59851.13506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=805bp|location=Sequence derived from alignment at H-elongata_contig59851:2804..3608+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATCGAAATGACTCCGTTCGGAAAGACGTTGGTCCTCGATGGAAT GATTCAGTCGGCACAGCTGGACGAGTTCATCTACCACGAATCGCTCGTGC ACCCGGCCATGCTCGCGCACTCTGATCCCAAGCGGGTGAGGACGTCGACG TCATAACTGTATGTTGCGATGCGCGATACACACATCAACGCTTCCCCTCC CCACTTTTCCCCCTCAGTCTTTCAATTCAATGCAGTGGCTCAATCAAAAC CAGATTCAAACATTGATTGTGAAGGTAGGAATATGCCGCCAAAAATTACT CGCGAGAAAAAAATAATGCGAAGAATAGTTGGGAGCAGGGCGGGAGCGGG AAAGTCTACAAGCTCTCTGTATTTCTGTTTATCTCTGAATTTGACGTCAC TTTGAAGTCGAAATGGGAGGAGGGTAATAATTGGCGTCGAGTTATCGCTA GTGCTGTGCTTGGATCCCTGCGCATGCAATTTCTTGCGGTCATATTCTCT ACGTTGGGTTGGGACATCGAAAACGCTCCAGACACAAGAGCACCTGAATC ATCCTTACGAGGGAGATCATCTCAGGGCGTGGACACGATTCCTCTTCATT GTTGTGATCGCCGAGCTACTGTCTCTCGGGGCTGGTGGTGCTAGCCGCGA GGAGCGATTCGTGCCGCCGTTAGCTTGGCCTCTGAAAATGTTGTCACGCT ACGTGCTCGCAGGTGTACATTGGGGGGGGCGGAGAGCTAGCGACAGCGCG GGAAGTTTTGCGGCACAAGTCTGTGGAATCGTGCGTCATGGTGGATCTGG ATGAG
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Coding sequence (CDS) from alignment at H-elongata_contig59851:2804..3608+

>mRNA_H-elongata_contig59851.13506.1 ID=mRNA_H-elongata_contig59851.13506.1|Name=mRNA_H-elongata_contig59851.13506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig59851:2804..3608+ (Himanthalia elongata Himel1 dioecious)
ATGACTCCGTTCGGAAAGACGTTGGTCCTCGATGGAATGATTCAGTCGGC
ACAGCTGGACGAGTTCATCTACCACGAATCGCTCGTGCACCCGGCCATGC
TCGCGCACTCTGATCCCAAGCGGATGACTCCGTTCGGAAAGACGTTGGTC
CTCGATGGAATGATTCAGTCGGCACAGCTGGACGAGTTCATCTACCACGA
ATCGCTCGTGCACCCGGCCATGCTCGCGCACTCTGATCCCAAGCGGGTGT
ACATTGGGGGGGGCGGAGAGCTAGCGACAGCGCGGGAAGTTTTGCGGCAC
AAGTCTGTGGAATCGTGCGTCATGGTGGATCTGGATGAGGTGTACATTGG
GGGGGGCGGAGAGCTAGCGACAGCGCGGGAAGTTTTGCGGCACAAGTCTG
TGGAATCGTGCGTCATGGTGGATCTGGATGAG
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