mRNA_H-elongata_contig5985.13505.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5985.13505.1
Unique NamemRNA_H-elongata_contig5985.13505.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5985.13505.1 vs. uniprot
Match: D7FJM8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM8_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.410e-33
Identity = 159/277 (57.40%), Postives = 181/277 (65.34%), Query Frame = 1 
Query:  181 VDPRFSFDGDSSFLGLAESQAIRGWDFKSAIEKLAKEDPNRARSSLVLDARIAAKRAELRKGRNKAKARKXXXXXXXXXXXXXXXXXXXXXXXXXXXVDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMGL--------------LGEDNLRELAVATGARGKRLEAAKRRKQK-------AVQDRDESERNFDGGGVLDPGDEGRNSDEXXXXXXXXXAAAFFGEGVGDDPSPGVEGAE-GGVPFQRLNLSRPLLRAVEAMGFVKPTPIQQRAVP 945
            VDP FSFD DS  LG+AE QA++GWDFKSAIEKLA EDP RAR+  VL+ RIAAKR+ELRKG+ KAK         XXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  L EDNLREL+   G+RGKRLEAAKR++ +       A  D+ +S+                   E         AA +F +G   D SPG + A  GGVPFQ+LN+SRPLLRAVEAMG+V PT +QQRAVP
Sbjct:   71 VDPSFSFDVDSGNLGIAERQAVKGWDFKSAIEKLAMEDPRRARTGRVLEDRIAAKRSELRKGKKKAKDNAKAIKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGLEEDNLRELSA--GSRGKRLEAAKRKEDRLSAAAAAAGNDKGQSDNXXXXXXXXXXXXXXXXXXEAKK------AAEYFEDGDDADASPGGDDASSGGVPFQQLNISRPLLRAVEAMGYVTPTSVQQRAVP 339
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BLAST of mRNA_H-elongata_contig5985.13505.1 vs. uniprot
Match: A0A835YJC4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-5
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  241 AIRGWDFKSAIEKLAKEDPNRARSSLVLDARIAAKRAELRKGRNKAK 381
            A RGW+F++ IEKLAKEDP RA ++  LDA+IAAKR EL K R + K
Sbjct:   72 AARGWNFRATIEKLAKEDPRRAGTAASLDAKIAAKRKELLKKRKEGK 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5985.13505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJM8_ECTSI6.410e-3357.40DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YJC4_9STRA3.370e-561.70P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5985contigH-elongata_contig5985:7505..11223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue4.4e-31
Seed eggNOG ortholog2880.D7FJM8
Preferred nameDDX27
KEGG koko:K13181
GOsGO:0000027,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0070035,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0338@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size948
Cds size948
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5985.13505.1prot_H-elongata_contig5985.13505.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5985 7505..11223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.647708-CDS-H-elongata_contig5985:7504..77691622930968.647708-CDS-H-elongata_contig5985:7504..7769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 7505..7769 +
1691679644.4472904-CDS-H-elongata_contig5985:7504..77691691679644.4472904-CDS-H-elongata_contig5985:7504..7769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 7505..7769 +
1622930968.6716642-CDS-H-elongata_contig5985:8887..90331622930968.6716642-CDS-H-elongata_contig5985:8887..9033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 8888..9033 +
1691679644.4636192-CDS-H-elongata_contig5985:8887..90331691679644.4636192-CDS-H-elongata_contig5985:8887..9033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 8888..9033 +
1622930968.6913738-CDS-H-elongata_contig5985:10135..103541622930968.6913738-CDS-H-elongata_contig5985:10135..10354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 10136..10354 +
1691679644.4731827-CDS-H-elongata_contig5985:10135..103541691679644.4731827-CDS-H-elongata_contig5985:10135..10354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 10136..10354 +
1622930968.722142-CDS-H-elongata_contig5985:10905..112231622930968.722142-CDS-H-elongata_contig5985:10905..11223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 10906..11223 +
1691679644.4825754-CDS-H-elongata_contig5985:10905..112231691679644.4825754-CDS-H-elongata_contig5985:10905..11223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5985 10906..11223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5985.13505.1

>prot_H-elongata_contig5985.13505.1 ID=prot_H-elongata_contig5985.13505.1|Name=mRNA_H-elongata_contig5985.13505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=316bp
MTMTIASDDEIELETDDDTDSSGEGEQQPDTLPRAVLTNARKKHERQRKA
GRAVGKERGEVDPRFSFDGDSSFLGLAESQAIRGWDFKSAIEKLAKEDPN
RARSSLVLDARIAAKRAELRKGRNKAKARKADAKAAEAVDDEEDNEESPE
REGRGDGVDNMDEDESDGDGDGRAPEEEAEEGEDEEEEKMGLLGEDNLRE
LAVATGARGKRLEAAKRRKQKAVQDRDESERNFDGGGVLDPGDEGRNSDE
DEEEEEARKAAAFFGEGVGDDPSPGVEGAEGGVPFQRLNLSRPLLRAVEA
MGFVKPTPIQQRAVPL
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mRNA from alignment at H-elongata_contig5985:7505..11223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5985.13505.1 ID=mRNA_H-elongata_contig5985.13505.1|Name=mRNA_H-elongata_contig5985.13505.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3719bp|location=Sequence derived from alignment at H-elongata_contig5985:7505..11223+ (Himanthalia elongata Himel1 dioecious)
ATGACGATGACCATTGCTTCGGACGATGAAATAGAGCTTGAGACAGATGA
CGACACAGACAGCAGTGGCGAAGGCGAGCAGCAACCTGACACTTTGCCGA
GGGCCGTTCTTACCAATGCTAGAAAGAAGCATGAGAGACAGAGAAAGGCG
GGGCGAGCTGTAGGGAAAGAGCGTGGCGAGGTCGACCCCAGGTTCTCTTT
TGACGGTGACTCGTCGTTTTTGGGCCTTGCGGAGAGCCAAGCAATCAGGG
GATGGGACTTTAAAAGTGAGAGGCATGCTGAGCTCGAGGGAAAATGCGAT
ACTTTTTTCTGGGAGATGTTTTTTTTAAGTTTGGTTAGGAACATGCTGGT
GAACGAGCACCACAAAAGACATGAAGGGGTGTCTTACGAGTGTCTTGGTG
CCTTTGAGCACTCTGTTGGTGTGGATTTAGTTTTTCACACACTACAGTAG
GTCCGTTTGTGGCCATCAACAAAGGGAGCGATTCAAGCAATCAACCTCGA
GGTGATCTCCTCTCCGTAGTGAACGTCTCCGCAGATTTTATATCGAAAAG
AAGTACGATGTCACCGCTGTGCATTGCAGTGTCTAATTTGCGTGCACATT
TGTAATCCTGCTCTAAAAGTCGACTTTCTAACTGATCGTAGCCACGTCTG
TCTGTAGGCAGCACCCGCCAGAGCCTAGGACGTAAATGGTATCAAACTTA
AAAAAAAAAAAAATTGCACAATTTTTATTTTTTTATTTTTTTAAACATTA
ACTCCCTGAGAACATCCACACCCTTCTTATGGTAGCACCAGGAGCGGTGT
AATTCAGGAAACCAACTATCGTCAGGTTTGAATGTGTACATTACTCATTA
CTACCTTTGAGCTCAAAATCGTCACATGTGATAATTCGTGTTGGGACAGG
GGAATAGTATTTTCCCTTTTTATCAATTTTGCATTAAACCGCGCAAACCG
GCATGACACGTAAGGGGGCGCCACGCCAATTTGCAAATATCCCCCCCTTA
TAAGGAGCTATCCCTCCTGTTCAGCTGACCACGACCAGAAGGCAACCAAA
TCCGGTTGATCTTCTGCTAAATGTGTGACCAACAACAACAACAATAGTAA
ATTAATCGGGTCAACGGTGTAATGTCGAGGGTCCCATCATTATCCCGTGC
ACTTGCATTATTTTTATTTTAAAACATATAAACTCATTCCAACCCTCCGA
ACATCCACGCCTTCTTAGCACCATGAGAGGTGCAGTCCAGGGGACTATGA
CCAACTATTGTTATCGTCAGGTTCATCATATATGTGGGGACGCCAGACCG
GAGCCCCCCTTTATAACTCTTAACTCTAGAATAGAGCATTTTTCATAGAA
ATACGCGAGACATGATCAACTTGTTCGGCGTAGGTGCCATCGAGAAGCTT
GCCAAGGAAGATCCTAATCGGGCACGATCCAGTCTGGTCCTCGATGCGCG
TATCGCCGCCAAGCGAGCTGAGCTGCGCAAGGGGAGAAACAAGGCCAAGG
CGAGGAAGGCAGATGCGAAAGCAGCAGAGGTACGAAATGGGATGGGATGG
GACGTGACATGGCGATCACAAATGGAACTAAGTTGGACGGAACAGGACGA
CTTTCCCCAGTAATGTGTGTGGCCATAACGTATAATAGAGTAAGATCAAC
CAGATTTGGTTGCCTCCTACTCGTGGTCATATCCATTGACAGACGGATGA
TTCGTCTTTCCCCAGCAACAGTATCAAATATTACAGAACCGTAGTATCTG
GTATTTTTCTAAGGGTTGAACCCCCCCCCCCCCCCGCCCCCCTCCTTATC
CCCTGCGACCCCTTCGCGGGCCAACCCGCCGCCAAAAAGACGGGGGATGC
CCCGGACGGTTCTGAGGAAGATTGCTTTTTTTTAATATGAAGAGCTGAAA
TAAGTTCAAATGTCCTAATACAGTAAATAGTGCGACCTCTGAAATGTGGC
GGTTGCGATGATGTCTGCTTATGCATCGGGAGCTTGTTTGAGCGAAATAC
TGAATCTATATACAGATGGGTATCTTATTCGCACAATTCAAAAATCACAT
AAGCTCTCTCGGAGTCCGAGCTAAAGTTTAAAATGTATTACGTCATAATC
TCCTTTATTTCTAAGTTATCTATAGGGTACAGTACAAGTAGTTCTTTTCC
TAATTTGAAATCCACTACGTAATACAAACTCCTAAATATAAAGGATGGGC
CTATTTACATCATATGGGTGTTTACTTCAAACCACCACCCAGACCTCAGT
TAGTTATAGTTATCTATAATCCGCAAAATATGGTGATTTCATTCTACCTA
AAACAGCGGTCTCTTAATATGTAGTCATTTTTTTTGTGATCTCGACGAAA
AATGATGGACCCAACTCTTACACAAGCGCACACCCAAATAAAAAATCGTC
ATATTTTGTTATTTTGCTGATAATAGGTTCAAAGTTTTATATATAATTAT
AATAAACTGAGGTCTGGGAGGTAATTCGACGTAAGCACCCATGGGGTGTA
AATAGGCGCGCCCAAATATACATGACATGTGTCAATATTTATCCATTTAT
AATATTATGCTCGATCCCTCTCAGGCCACAGCTAAGGGCCACATTCGACA
CGATCCAGGAGATGGCGGCCTCGCGGAGGAGGCTGTTGATGATGAGGAGG
ATAACGAAGAGAGTCCAGAACGAGAGGGTCGTGGCGATGGCGTCGATAAC
ATGGATGAAGACGAGAGCGATGGTGACGGTGACGGGCGAGCACCAGAGGA
AGAGGCAGAGGAGGGAGAAGACGAAGAAGAAGAAAAAATGGGGCTGCTGG
GGGAAGACAACCTGCGAGAGCTTGCGGTAGCTACGGGGGCCCGCGGGAAG
GTGCTTTGTTTTTCTTTCGTGTTTTATTTGCCTTTAGTTTGCGTTTTTTT
TCGTTTATTCCCTCTTCTTTTTGCCTCCCTTTTTATCAATTTGCATTAGA
CCGCGTAAACCGGCGTGGCACGTAAGGGGGCGCCACGCCGGTTTGCCAAT
ACCCTTATGGGAAGCTATCTCTGCCCCCTTTTTATATTTTGCAAAAACAA
AATCCTGCTTTCGTGCTTTCGTTCCCCCCACGTCGCTCATTTTTTATTGA
AACAATGTCTTCTTCCTCAGCAACATACAATGATTCATATTTGCTTATTC
AAGCTATCCGTCGTTGCGCGTAGGCTCCAACCAACGCTCCCCAAGAGTTA
GACACGACATGGCTGAGACGTAGGCGTTTTTCTTCCCTTCCCTATCAGGC
ACACACTTAAAAGGTTATGCACCTTTGCTACGTTTGTCTTCCTATATATC
CATGACTTCTTATATTTTTCAGACACTTACGATGGATCGATTAATGGGTC
TACACCCCAGCGTCTGAACTGCCGTTTGCTCTGTTGGAAACCCCTTTCCA
GCGTCTGGAGGCAGCAAAACGAAGGAAACAAAAAGCGGTCCAAGACAGGG
ACGAAAGCGAACGTAATTTTGACGGTGGAGGCGTTTTAGACCCCGGGGAT
GAGGGGCGAAACAGCGACGAGGATGAAGAGGAAGAAGAAGCAAGGAAAGC
GGCAGCATTTTTTGGAGAGGGGGTTGGTGACGACCCGTCCCCGGGGGTGG
AGGGAGCCGAAGGCGGGGTGCCCTTTCAGCGACTGAATCTTTCCCGACCG
CTCTTGAGAGCTGTCGAGGCCATGGGGTTCGTGAAACCAACGCCTATCCA
ACAGCGGGCGGTACCCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig5985:7505..11223+

>mRNA_H-elongata_contig5985.13505.1 ID=mRNA_H-elongata_contig5985.13505.1|Name=mRNA_H-elongata_contig5985.13505.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1896bp|location=Sequence derived from alignment at H-elongata_contig5985:7505..11223+ (Himanthalia elongata Himel1 dioecious)
ATGACGATGACCATTGCTTCGGACGATGAAATAGAGCTTGAGACAGATGA
CGACACAGACAGCAGTGGCGAAGGCGAGCAGCAACCTGACACTTTGCCGA
GGGCCGTTCTTACCAATGCTAGAAAGAAGCATGAGAGACAGAGAAAGGCG
GGGCGAGCTGTAGGGAAAGAGCGTGGCGAGGTCGACCCCAGGTTCTCTTT
TGACGGTGACTCGTCGTTTTTGGGCCTTGCGGAGAGCCAAGCAATCAGGG
GATGGGACTTTAAAAATGACGATGACCATTGCTTCGGACGATGAAATAGA
GCTTGAGACAGATGACGACACAGACAGCAGTGGCGAAGGCGAGCAGCAAC
CTGACACTTTGCCGAGGGCCGTTCTTACCAATGCTAGAAAGAAGCATGAG
AGACAGAGAAAGGCGGGGCGAGCTGTAGGGAAAGAGCGTGGCGAGGTCGA
CCCCAGGTTCTCTTTTGACGGTGACTCGTCGTTTTTGGGCCTTGCGGAGA
GCCAAGCAATCAGGGGATGGGACTTTAAAAGTGCCATCGAGAAGCTTGCC
AAGGAAGATCCTAATCGGGCACGATCCAGTCTGGTCCTCGATGCGCGTAT
CGCCGCCAAGCGAGCTGAGCTGCGCAAGGGGAGAAACAAGGCCAAGGCGA
GGAAGGCAGATGCGAAAGCAGCAGAGGTGCCATCGAGAAGCTTGCCAAGG
AAGATCCTAATCGGGCACGATCCAGTCTGGTCCTCGATGCGCGTATCGCC
GCCAAGCGAGCTGAGCTGCGCAAGGGGAGAAACAAGGCCAAGGCGAGGAA
GGCAGATGCGAAAGCAGCAGAGGCTGTTGATGATGAGGAGGATAACGAAG
AGAGTCCAGAACGAGAGGGTCGTGGCGATGGCGTCGATAACATGGATGAA
GACGAGAGCGATGGTGACGGTGACGGGCGAGCACCAGAGGAAGAGGCAGA
GGAGGGAGAAGACGAAGAAGAAGAAAAAATGGGGCTGCTGGGGGAAGACA
ACCTGCGAGAGCTTGCGGTAGCTACGGGGGCCCGCGGGAAGGCTGTTGAT
GATGAGGAGGATAACGAAGAGAGTCCAGAACGAGAGGGTCGTGGCGATGG
CGTCGATAACATGGATGAAGACGAGAGCGATGGTGACGGTGACGGGCGAG
CACCAGAGGAAGAGGCAGAGGAGGGAGAAGACGAAGAAGAAGAAAAAATG
GGGCTGCTGGGGGAAGACAACCTGCGAGAGCTTGCGGTAGCTACGGGGGC
CCGCGGGAAGCGTCTGGAGGCAGCAAAACGAAGGAAACAAAAAGCGGTCC
AAGACAGGGACGAAAGCGAACGTAATTTTGACGGTGGAGGCGTTTTAGAC
CCCGGGGATGAGGGGCGAAACAGCGACGAGGATGAAGAGGAAGAAGAAGC
AAGGAAAGCGGCAGCATTTTTTGGAGAGGGGGTTGGTGACGACCCGTCCC
CGGGGGTGGAGGGAGCCGAAGGCGGGGTGCCCTTTCAGCGACTGAATCTT
TCCCGACCGCTCTTGAGAGCTGTCGAGGCCATGGGGTTCGTGAAACCAAC
GCCTATCCAACAGCGGGCGGTACCCCTACGTCTGGAGGCAGCAAAACGAA
GGAAACAAAAAGCGGTCCAAGACAGGGACGAAAGCGAACGTAATTTTGAC
GGTGGAGGCGTTTTAGACCCCGGGGATGAGGGGCGAAACAGCGACGAGGA
TGAAGAGGAAGAAGAAGCAAGGAAAGCGGCAGCATTTTTTGGAGAGGGGG
TTGGTGACGACCCGTCCCCGGGGGTGGAGGGAGCCGAAGGCGGGGTGCCC
TTTCAGCGACTGAATCTTTCCCGACCGCTCTTGAGAGCTGTCGAGGCCAT
GGGGTTCGTGAAACCAACGCCTATCCAACAGCGGGCGGTACCCCTA
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