mRNA_H-elongata_contig59837.13503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59837.13503.1
Unique NamemRNA_H-elongata_contig59837.13503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A6H5KG34_9PHAE (LepA_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG34_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.400e-50
Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQVKSRSKGYASMEYQ+L+WRD+DLVRLDIKINGEDAPPLST+CHR QA+ RGK L +KLK+LIPRQMFRVPIQAC+GVK
Sbjct:    7 EVITDFFDQVKSRSKGYASMEYQILEWRDQDLVRLDIKINGEDAPPLSTVCHRDQAHQRGKVLTEKLKQLIPRQMFRVPIQACIGVK 93
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: D7G0L8_ECTSI (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L8_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.990e-45
Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQVKSRSKGYASMEYQ+L+WRD+DLVRLDIKINGEDAPPLST+CHR QA+ RGK L +KLK+LIPRQMFRVPIQAC+GVK
Sbjct:  567 EVITDFFDQVKSRSKGYASMEYQILEWRDQDLVRLDIKINGEDAPPLSTVCHRDQAHQRGKVLTEKLKQLIPRQMFRVPIQACIGVK 653
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A836CDX2_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.970e-39
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQVKSRSKGYASMEY L  +R+ DLVRLDIKINGE+A PL++ICHR QA+ RGK L +KLK+LIPRQMFRVPIQAC+G K
Sbjct:  473 EVITDFFDQVKSRSKGYASMEYSLTGYRENDLVRLDIKINGEEAGPLASICHRDQAHQRGKQLTEKLKQLIPRQMFRVPIQACIGAK 559
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A6U1P806_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P806_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.500e-39
Identity = 63/87 (72.41%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQ+KSR++GYASMEY ++ +R++DL RLDIKINGEDAPPL+TI HR +AY  GK L +KLKELIPRQ FRVP+QAC+G+K
Sbjct:  209 EVITDFFDQMKSRTRGYASMEYSMIGYREDDLCRLDIKINGEDAPPLATIVHREKAYAVGKALTEKLKELIPRQQFRVPVQACIGMK 295
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A7R9VCM2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VCM2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.010e-38
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQ+KSR+KGYASMEY ++D+R+ DLVRLD+KIN EDAPPL+TI HR  A   G+ L   LKELIPRQMF+VPIQACVGVK
Sbjct:   47 EVITDFFDQLKSRTKGYASMEYSIVDYRESDLVRLDVKINYEDAPPLATIVHRDAAQTVGRKLVASLKELIPRQMFKVPIQACVGVK 133
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A7S2W0C2_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0C2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.500e-38
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQ+KSR+KGYASMEY ++D+R  DLVRLD+KINGEDAPPL++I HR QA   G+ L  KLKELIPRQMFRVPIQAC+GVK
Sbjct:  250 EVITDFFDQLKSRTKGYASMEYSIIDYRASDLVRLDVKINGEDAPPLASIMHRDQAQIVGRRLVAKLKELIPRQMFRVPIQACIGVK 336
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BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A7S2EU07_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EU07_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.080e-38
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFDQ+KSR+KGYASMEY++ D+R+ DLVRLD+KIN EDAPPL+TI HR  A   G+ L   LKELIPRQMF+VPIQAC+GVK
Sbjct:   61 EVITDFFDQLKSRTKGYASMEYKVTDYRESDLVRLDVKINYEDAPPLATIVHRDAAQSVGRKLVAALKELIPRQMFKVPIQACIGVK 147
[Close]
BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A7S2RSX4_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSX4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.990e-37
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFD++KSRSKGYASMEY  + +R  DLVRLD++INGEDAPPL+ ICHR+ AY  GK L +KLKELIPRQ F+VPIQAC+GVK
Sbjct:  526 EVITDFFDELKSRSKGYASMEYTTIGYRANDLVRLDVRINGEDAPPLACICHRNDAYSIGKGLTEKLKELIPRQQFKVPIQACIGVK 612
[Close]
BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A7S2CTP0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTP0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.750e-37
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EVITDFFD++KSR+KGYASM+Y  + +R  DLVRLD+KINGEDA PL+TI H+  A+  GK L +KLKE+IPRQ+FRVPIQAC+GVK
Sbjct:   42 EVITDFFDEMKSRTKGYASMDYTPIGYRANDLVRLDVKINGEDASPLATIVHKDSAHSIGKALTEKLKEVIPRQLFRVPIQACIGVK 128
[Close]
BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Match: A0A836C4S4_9CHLO (Translation factor GUF1 homolog, chloroplastic n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C4S4_9CHLO)

HSP 1 Score: 139 bits (351), Expect = 1.040e-36
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTICHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK 261
            EV+TD+FDQ+KSRSKGYASMEY+++ +R+ DLV+L+IKINGE A PLS ICHR  AY  G+ L  KLKELIPRQMFRVPIQACVGVK
Sbjct:  538 EVVTDYFDQLKSRSKGYASMEYKVIGYRENDLVKLEIKINGEPAEPLSVICHRDTAYKTGRQLTSKLKELIPRQMFRVPIQACVGVK 624
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59837.13503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG34_9PHAE3.400e-5086.21LepA_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G0L8_ECTSI1.990e-4586.21Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A836CDX2_9STRA2.970e-3978.16Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A6U1P806_9STRA6.500e-3972.41Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7R9VCM2_9STRA1.010e-3873.56Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2W0C2_9STRA1.500e-3875.86Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S2EU07_9STRA3.080e-3872.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2RSX4_9STRA1.990e-3773.56Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S2CTP0_9STRA5.750e-3768.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836C4S4_9CHLO1.040e-3673.56Translation factor GUF1 homolog, chloroplastic n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59837contigH-elongata_contig59837:309..1259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue8.6e-38
Seed eggNOG ortholog2880.D7G0L8
Preferred nameLEPA
KEGG koko:K03596,ko:K04771,ko:K21594
KEGG Pathwayko01503,ko02020,ko05134,map01503,map02020,map05134
KEGG ModuleM00728
GOsGO:0000166,GO:0000287,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0019904,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046872,GO:0061745,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0481@1,KOG0462@2759
EC3.4.21.107
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPEF4, plastid translation elongation factor EF4 (LepA)
Ec32 orthologEc-06_007260.1
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.325106-CDS-H-elongata_contig59837:308..4921622930968.325106-CDS-H-elongata_contig59837:308..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59837 309..492 +
1691679644.3152745-CDS-H-elongata_contig59837:308..4921691679644.3152745-CDS-H-elongata_contig59837:308..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59837 309..492 +
1622930968.3435502-CDS-H-elongata_contig59837:1182..12591622930968.3435502-CDS-H-elongata_contig59837:1182..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59837 1183..1259 +
1691679644.3282132-CDS-H-elongata_contig59837:1182..12591691679644.3282132-CDS-H-elongata_contig59837:1182..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59837 1183..1259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59837.13503.1prot_H-elongata_contig59837.13503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59837 309..1259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59837.13503.1

>prot_H-elongata_contig59837.13503.1 ID=prot_H-elongata_contig59837.13503.1|Name=mRNA_H-elongata_contig59837.13503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
EVITDFFDQVKSRSKGYASMEYQLLDWRDEDLVRLDIKINGEDAPPLSTI
CHRSQAYGRGKNLADKLKELIPRQMFRVPIQACVGVK
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mRNA from alignment at H-elongata_contig59837:309..1259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59837.13503.1 ID=mRNA_H-elongata_contig59837.13503.1|Name=mRNA_H-elongata_contig59837.13503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=951bp|location=Sequence derived from alignment at H-elongata_contig59837:309..1259+ (Himanthalia elongata Himel1 dioecious)
GAGGTCATCACGGATTTCTTCGACCAGGTCAAGTCTCGCAGCAAAGGATA
CGCCTCCATGGAGTACCAACTCCTGGATTGGAGGGACGAAGACCTGGTGC
GATTGGACATCAAGATCAACGGAGAGGATGCCCCGCCGCTGTCGACCATC
TGTCACCGTAGTCAGGCTTACGGTCGAGGAAAAAGTGAGAAGAGAGCGAA
AGGGCAAGGATCTTGTCTTGGCATGCTAGCGGGGGTTTCGAGCTGCGCAA
AGGCGCAGGGAACAAGCGGAGCTGGGTACGTCGAAGGGAAAATTTGCTAG
AGTAAGCATCGTTCTTGGTAAAAAATACTTAGATCGCGAGTGGTGTAAAC
TCGACTGATCTTCTCTCTGTTATGTTGGGGGGGAGAGGTTCGTCGACGAT
AGCTTGCCGTCACCGTATAATACATTGTTATACACTATGTTAAACATTAT
ATTATACAGTGTGTTATTTCGTCGCCGAAGGGATCGTTGTAGACCCGTCG
GCTCTCCCAAATCAGCGAGAGCGTGATCGGGAACGCCGCGTTGAGCCCAG
GGAGGGTTATACTTAGTTTCCGCCGTATGCATGAGACCCACCACAGCCGC
TGGTTCACCTGTCGCCCAAGATTCGGTAAGCCACTCTCCTCACGAGCTTT
TTCGTCTTATCTCTCCTCCTCTCTGCCTTCACGACCGTCGGAATACTACA
TTGTATATCTTATACCGTATACGTAAGCACTGTGCACACAGCAGCAGTCG
GCATGCGAAGCGCCGGAAGCCTAGAGTCGTCACCTGAGGTATACGATACG
TCTTGATCCCTCCCTCTCCCTCTTATTCCTTTTGACGGCCCGGCGACATG
ATATTGCGTGGTTCGAAACCTCAGACTTGGCGGACAAGCTCAAGGAGCTC
ATCCCGCGCCAGATGTTCCGAGTGCCTATACAGGCTTGCGTTGGGGTAAA
G
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Coding sequence (CDS) from alignment at H-elongata_contig59837:309..1259+

>mRNA_H-elongata_contig59837.13503.1 ID=mRNA_H-elongata_contig59837.13503.1|Name=mRNA_H-elongata_contig59837.13503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig59837:309..1259+ (Himanthalia elongata Himel1 dioecious)
GAGGTCATCACGGATTTCTTCGACCAGGTCAAGTCTCGCAGCAAAGGATA
CGCCTCCATGGAGTACCAACTCCTGGATTGGAGGGACGAAGACCTGGTGC
GATTGGACATCAAGATCAACGGAGAGGATGCCCCGCCGCTGTCGACCATC
TGTCACCGTAGTCAGGCTTACGGTCGAGGAAAAAGAGGTCATCACGGATT
TCTTCGACCAGGTCAAGTCTCGCAGCAAAGGATACGCCTCCATGGAGTAC
CAACTCCTGGATTGGAGGGACGAAGACCTGGTGCGATTGGACATCAAGAT
CAACGGAGAGGATGCCCCGCCGCTGTCGACCATCTGTCACCGTAGTCAGG
CTTACGGTCGAGGAAAAAACTTGGCGGACAAGCTCAAGGAGCTCATCCCG
CGCCAGATGTTCCGAGTGCCTATACAGGCTTGCGTTGGGGTAAAGACTTG
GCGGACAAGCTCAAGGAGCTCATCCCGCGCCAGATGTTCCGAGTGCCTAT
ACAGGCTTGCGTTGGGGTAAAG
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