mRNA_H-elongata_contig59780.13495.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.450e-21 Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEF 231
LH GNR++S R KHIALR+FF++ELV E KISIHYV+TED LAD+GTK +NHR ++L+ LIN F
Sbjct: 930 LHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.410e-20 Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEF 231
LH GNR++S R KHIALR+FF++ELV E KISIHYV TED LAD+GTK + HR ++L+ LIN F
Sbjct: 1599 LHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 9.410e-20 Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSN-HRHRNLIKLINEF 231
LH GNR++S R KHIALR+FF++ELV E KISIHYV TED LAD+GTK N HR ++L+ L+N F
Sbjct: 192 LHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNF 258
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.520e-19 Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEF 231
LH GNR++S R KHIALR+FF++ELV E KISIHYV TED LAD+GTK + HR ++L+ LIN
Sbjct: 591 LHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNL 656
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.600e-19 Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEF 231
LH GNR++S R KHIALR+FF++ELV E KISIHY TED LAD+GTK + HR +L+ LIN F
Sbjct: 370 LHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 3.670e-19 Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEF 231
LH GNR++S R KHIALR+FF++ELV E KISIHY TED LA +GTK + HR ++L+ IN F
Sbjct: 145 LHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.210e-17 Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINE 228
LHV GN+T+S R KH+ALR+F+++E+V+E +ISIHY+ TED LAD+GTK L+ RH+ LI I +
Sbjct: 623 LHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.010e-16 Identity = 33/64 (51.56%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLIN 225
LH GNR++S R KHIALR+F+++EL+ E +ISIHY+ T+ +AD+GTK L+ HR ++L+ +I+
Sbjct: 1100 LHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.760e-16 Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 52 RTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEFK 234
R S R KHIALR+FFV+ELV E KISIHYV TED LAD+GTK + HR ++L+ LIN +
Sbjct: 1713 RAASSRTKHIALRFFFVRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLVDLINNLR 1773
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 3.710e-16 Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 34 LHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTEDQLADLGTKPLSNHRHRNLIKLINEFKA 237
LH GNR++S R KHIALR+F+++ELV E +ISIHYV T+ AD+GTK L+ +R ++L+ +I+ F
Sbjct: 756 LHALGNRSFSSREKHIALRFFYIRELVSEGRISIHYVPTDSNPADIGTKHLNKYRLKHLLDIISSFNV 823 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59780.13495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59780.13495.1 >prot_H-elongata_contig59780.13495.1 ID=prot_H-elongata_contig59780.13495.1|Name=mRNA_H-elongata_contig59780.13495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp MRASAAYRCTALHVAGNRTYSPRAKHIALRYFFVQELVEESKISIHYVKTback to top mRNA from alignment at H-elongata_contig59780:3311..3550+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59780.13495.1 ID=mRNA_H-elongata_contig59780.13495.1|Name=mRNA_H-elongata_contig59780.13495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig59780:3311..3550+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59780:3311..3550+ >mRNA_H-elongata_contig59780.13495.1 ID=mRNA_H-elongata_contig59780.13495.1|Name=mRNA_H-elongata_contig59780.13495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig59780:3311..3550+ (Himanthalia elongata Himel1 dioecious)back to top |