mRNA_H-elongata_contig59698.13488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59698.13488.1
Unique NamemRNA_H-elongata_contig59698.13488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A6H5KSK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.860e-50
Identity = 106/204 (51.96%), Postives = 120/204 (58.82%), Query Frame = 1
Query:    1 QGCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKQPSVS-----ADERKTALYH------------------WSERHVSIVQNTIFQTLARLAMDALAAYRSGQENANISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            +GC LDFFT  +L E DEARTSMAKYM RRN     R        G     PSV       D R  +                     W+ERH+S+V++TIF TLA LA DAL A RS    A+  D+ R+  A          LFNEQYVVKPP+SSI+FGWHTDEREQLAMC+F  G  PPVYVSVWLALDDCDA NGCLEV
Sbjct:   48 KGCALDFFTNNELPEDDEARTSMAKYMSRRNGRRRRR------TPGGNDLHPSVEKAPPPGDSRGASRDSSGTMSGLSTTSPSCGGGGWTERHLSVVRDTIFGTLAALAWDALKAERSAA--ADEDDALRNPDASGAGDRGELLLFNEQYVVKPPRSSIEFGWHTDEREQLAMCVFAPGAGPPVYVSVWLALDDCDAVNGCLEV 243          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: D7FYI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI7_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.680e-24
Identity = 70/160 (43.75%), Postives = 88/160 (55.00%), Query Frame = 1
Query:    1 QGCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKQPSVSADERKTALYH------------------WSERHVSIVQNTIFQTLARLAMDALAAYRSGQENANISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHT 426
            +GC LDFFT  +L E DEARTSMAKYM RRN G   R+    + +    ++     D R  +                     W+ERH+S+V++TIF TLA LA DAL A RS    A+  D+ R+  A          LFNEQYVVKPP+SSI+FGWHT
Sbjct:   48 KGCALDFFTNNELPEDDEARTSMAKYMSRRN-GRRRRRFPGGNDIHPSVEKAPPPGDSRGASRDGGGTMSGLSTTSPSCGGGGWTERHLSVVRDTIFGTLAALAWDALEAERSAA--ADEEDAVRNPDASGAGERGGLLLFNEQYVVKPPRSSIEFGWHT 204          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A836CGX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.310e-14
Identity = 60/182 (32.97%), Postives = 80/182 (43.96%), Query Frame = 1
Query:    4 GCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQKQPSVSADERKTALYHWSERHVSIVQNTIFQTLARLAMDALAAYRSGQENANISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPV--YVSVWLALDDCDAANGCLEV 543
             C LDFF+  DL +   AR + +KY   R            S  G +                 +   H S+V + +F+ L  L + +L                R A A + R      LFNEQY+ KPP+S++ F WH D  EQLAM +  +  Q P   Y SVW+ALDD  A NGCL V
Sbjct:   53 SCALDFFSECDLPDTHSARVNASKYQDLR-----------WSRCGVD-----------------FGREHKSLVADVLFRQLPELLL-SLTQXXXXXXXXXXXXXXREAPAPQQRQLV---LFNEQYICKPPRSAVNFRWHRDADEQLAMVLATAPHQAPALHYYSVWVALDDAAADNGCLVV 202          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: L1ID35_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ID35_GUITC)

HSP 1 Score: 76.6 bits (187), Expect = 3.700e-13
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  364 LFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            LFNEQYVVKPP+S ++FGWHTDE EQL MC+     Q P YVSVWL L D    NG LE+
Sbjct:  190 LFNEQYVVKPPQSRVEFGWHTDEAEQLQMCL--QRPQSP-YVSVWLPLCDTTFHNGTLEI 246          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A024GC10_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GC10_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.490e-11
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  361 FLFNEQYVVKPPKSSIKFGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            +LFN+ Y+VKPP+S  KFGWH D+ +QLAM    + ++P  Y SVW ALD     NG +E+
Sbjct:  125 YLFNDHYIVKPPQSDSKFGWHRDDEKQLAMISSWASIRP--YFSVWCALDSITKENGAIEL 183          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: D7FYI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.120e-9
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  448 MCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            MC+F  G +PPVYVSVWLALDDCDA NGCLEV
Sbjct:    1 MCVFAPGARPPVYVSVWLALDDCDAVNGCLEV 32          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A835VZ50_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835VZ50_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 4.020e-9
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  331 AVRYRPATSPFLFNEQYVVKPPKSSIK--FGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            A  Y  A  P+LFNEQ+++KPP+S+ +  FGWH D       C      Q   Y+SVW ALDD +A NG L V
Sbjct:  134 AADYGRAAGPYLFNEQFIIKPPRSTARSAFGWHRDSD----WCRGRPEFQYSPYISVWTALDDMEAGNGALAV 202          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A2K3E5F3_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E5F3_CHLRE)

HSP 1 Score: 64.3 bits (155), Expect = 8.260e-9
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  358 PFLFNEQYVVKPPKSSIK--FGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            P+LFNEQ+++KPP+SS +  FGWH D       C      Q   Y+SVW ALDD DA NG L V
Sbjct:  291 PYLFNEQFIIKPPRSSARCAFGWHRDSD----WCRGRPEFQYSPYISVWAALDDMDAENGALAV 350          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A061R772_9CHLO (Phytanoyl-dioxygenase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R772_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 8.710e-8
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 1
Query:  352 TSPFLFNEQYVVKPPKSSIK-FGWHTDE---REQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            T P+LFNEQY+VKPP+S +  F WH D    R++        GV+ P YVSVW ALDD    NG L +
Sbjct:  108 TRPWLFNEQYIVKPPRSPLSAFAWHRDSDWVRDE-------DGVEYP-YVSVWCALDDTATGNGTLSI 167          
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Match: A0A8J4CJ13_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CJ13_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.170e-7
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1
Query:  358 PFLFNEQYVVKPPKSSIK--FGWHTDEREQLAMCIFPSGVQPPVYVSVWLALDDCDAANGCLEV 543
            P+LFNEQ++VKPP+SS    FGWH D       C      +   YVSVW ALDD  A NG L V
Sbjct:  259 PYLFNEQFIVKPPRSSAAAAFGWHRDSD----WCRDRQEYEYSPYVSVWTALDDMTADNGALTV 318          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59698.13488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KSK1_9PHAE5.860e-5051.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYI7_ECTSI1.680e-2443.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGX5_9STRA1.310e-1432.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1ID35_GUITC3.700e-1363.33Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A024GC10_9STRA6.490e-1149.18Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
D7FYI8_ECTSI3.120e-981.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835VZ50_9CHLO4.020e-945.21Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A2K3E5F3_CHLRE8.260e-950.00Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A061R772_9CHLO8.710e-848.53Phytanoyl-dioxygenase n=2 Tax=Tetraselmis sp. GSL0... [more]
A0A8J4CJ13_9CHLO2.170e-750.00Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59698contigH-elongata_contig59698:2567..3562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog164328.Phyra75957
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2B580@1,2S0IH@2759,3QF9B@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhytanoyl-CoA dioxygenase
Ec32 orthologEc-23_003040.1
Exons3
Model size543
Cds size543
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59698.13488.1prot_H-elongata_contig59698.13488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59698 2567..3562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.7462988-CDS-H-elongata_contig59698:2566..28871622930966.7462988-CDS-H-elongata_contig59698:2566..2887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59698 2567..2887 +
1691679643.6668866-CDS-H-elongata_contig59698:2566..28871691679643.6668866-CDS-H-elongata_contig59698:2566..2887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59698 2567..2887 +
1622930966.7613006-CDS-H-elongata_contig59698:3103..32081622930966.7613006-CDS-H-elongata_contig59698:3103..3208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59698 3104..3208 +
1691679643.6762502-CDS-H-elongata_contig59698:3103..32081691679643.6762502-CDS-H-elongata_contig59698:3103..3208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59698 3104..3208 +
1622930966.7797768-CDS-H-elongata_contig59698:3445..35621622930966.7797768-CDS-H-elongata_contig59698:3445..3562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59698 3446..3562 +
1691679643.684035-CDS-H-elongata_contig59698:3445..35621691679643.684035-CDS-H-elongata_contig59698:3445..3562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59698 3446..3562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59698.13488.1

>prot_H-elongata_contig59698.13488.1 ID=prot_H-elongata_contig59698.13488.1|Name=mRNA_H-elongata_contig59698.13488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
QGCTLDFFTTRDLTEYDEARTSMAKYMWRRNNGSHNRKQSLCSPVGAEQK
QPSVSADERKTALYHWSERHVSIVQNTIFQTLARLAMDALAAYRSGQENA
NISDSPRHAIAVRYRPATSPFLFNEQYVVKPPKSSIKFGWHTDEREQLAM
CIFPSGVQPPVYVSVWLALDDCDAANGCLEV
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mRNA from alignment at H-elongata_contig59698:2567..3562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59698.13488.1 ID=mRNA_H-elongata_contig59698.13488.1|Name=mRNA_H-elongata_contig59698.13488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at H-elongata_contig59698:2567..3562+ (Himanthalia elongata Himel1 dioecious)
CAGGGCTGTACGCTGGATTTCTTTACGACCAGAGATCTGACGGAATACGA CGAAGCGAGGACATCAATGGCGAAGTACATGTGGCGTAGAAACAATGGAA GTCATAACCGCAAACAATCGTTGTGCTCACCAGTCGGTGCAGAGCAGAAA CAGCCTTCTGTTTCTGCTGATGAACGGAAAACAGCCCTATATCACTGGAG TGAGCGCCATGTATCGATTGTACAGAACACAATTTTTCAAACGCTGGCGC GCCTCGCGATGGATGCTTTGGCGGCCTACCGCTCTGGACAGGAAAACGCT AATATAAGCGATTCTCCGCGGGTTTTGAGTAATCCAGCCCCGAATATCTC CGGCGACAGCTGCAATGGTGCGGCGCGTCAACCACCGATTTGTGAAGAAG CGAAGCAGGGTGCCACGCCAACCTCTCTGCTCGCCATTGATAATTACCAT CGAAGCGCGAAGTCTACACCATCTGCTTCAGGGGTGAAAAGGTCCTGCCC GTTTAATGAAGATGGACAAGCGAGCAAGACTATGAAGCATGCAATCGCCG TTCGGTACAGACCTGCCACATCACCGTTCTTATTCAACGAGCAGTACGTG GTGAAACCGCCAAAGAGTTCCATCAAGTTCGGCTGGCACACGGTGAGTAT GCAAGCGATTCCCGCGAGTGAGCAAAGTGATCACCAACCTGCGCTCTCCG ATGGAGTAGACAGACACCCTTGATTGTTTAGCCAAGTTTGGGAGTATGCG TTTAACATGTAGAAATTACACACTCGTAGAGCAGACGTTTCTATTGGTCC TTTGAAACCAGTATTAATACTGCACTTGGTCGCCGCTGAACTCGCTTTAT AACAAACCCTTTATTATTTGGACTTCCAGGATGAGAGAGAGCAACTTGCG ATGTGCATCTTCCCTTCCGGAGTTCAGCCCCCTGTATATGTCAGCGTTTG GCTTGCGCTCGATGACTGCGACGCTGCGAATGGCTGTCTGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig59698:2567..3562+

>mRNA_H-elongata_contig59698.13488.1 ID=mRNA_H-elongata_contig59698.13488.1|Name=mRNA_H-elongata_contig59698.13488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig59698:2567..3562+ (Himanthalia elongata Himel1 dioecious)
CAGGGCTGTACGCTGGATTTCTTTACGACCAGAGATCTGACGGAATACGA
CGAAGCGAGGACATCAATGGCGAAGTACATGTGGCGTAGAAACAATGGAA
GTCATAACCGCAAACAATCGTTGTGCTCACCAGTCGGTGCAGAGCAGAAA
CAGCCTTCTGTTTCTGCTGATGAACGGAAAACAGCCCTATATCACTGGAG
TGAGCGCCATGTATCGATTGTACAGAACACAATTTTTCAAACGCTGGCGC
GCCTCGCGATGGATGCTTTGGCGGCCTACCGCTCTGGACAGGAAAACGCT
AATATAAGCGATTCTCCGCGGCAGGGCTGTACGCTGGATTTCTTTACGAC
CAGAGATCTGACGGAATACGACGAAGCGAGGACATCAATGGCGAAGTACA
TGTGGCGTAGAAACAATGGAAGTCATAACCGCAAACAATCGTTGTGCTCA
CCAGTCGGTGCAGAGCAGAAACAGCCTTCTGTTTCTGCTGATGAACGGAA
AACAGCCCTATATCACTGGAGTGAGCGCCATGTATCGATTGTACAGAACA
CAATTTTTCAAACGCTGGCGCGCCTCGCGATGGATGCTTTGGCGGCCTAC
CGCTCTGGACAGGAAAACGCTAATATAAGCGATTCTCCGCGGCATGCAAT
CGCCGTTCGGTACAGACCTGCCACATCACCGTTCTTATTCAACGAGCAGT
ACGTGGTGAAACCGCCAAAGAGTTCCATCAAGTTCGGCTGGCACACGCAT
GCAATCGCCGTTCGGTACAGACCTGCCACATCACCGTTCTTATTCAACGA
GCAGTACGTGGTGAAACCGCCAAAGAGTTCCATCAAGTTCGGCTGGCACA
CGGATGAGAGAGAGCAACTTGCGATGTGCATCTTCCCTTCCGGAGTTCAG
CCCCCTGTATATGTCAGCGTTTGGCTTGCGCTCGATGACTGCGACGCTGC
GAATGGCTGTCTGGAGGTGGATGAGAGAGAGCAACTTGCGATGTGCATCT
TCCCTTCCGGAGTTCAGCCCCCTGTATATGTCAGCGTTTGGCTTGCGCTC
GATGACTGCGACGCTGCGAATGGCTGTCTGGAGGTG
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