mRNA_H-elongata_contig59654.13485.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59654.13485.1
Unique NamemRNA_H-elongata_contig59654.13485.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59654.13485.1 vs. uniprot
Match: D7G1U7_ECTSI (CUE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U7_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.650e-26
Identity = 80/179 (44.69%), Postives = 89/179 (49.72%), Query Frame = 1 
Query:    1 ANGGNVERTVEHLLGNPTGVSNTGGVGVSGGGAEGRGGTARTDHDAALALQLAREWGDDPTIVPPPPTRPVGIPSPYDRPAAGVSRGIQGGVHTAVGMGSAQQGLIGAAATENRTEGV----------------NGRRGRRVALPENFLRAPGWRAGG--KVSSDPQVAADARLAMMLQ 483
            A+GG+VERTVEHLL NP   S                 +  TDHDAALALQL+REW D+PT +PPPP RP GIP+PY     GV                                                    RRGRRVALPE FLR PGW  GG  +VSSDPQVAADA+LAMMLQ
Sbjct:   31 AHGGHVERTVEHLLSNPQAASGXXXXXXXXXXXXXXXASRGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPY-----GVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59654.13485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1U7_ECTSI1.650e-2644.69CUE domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59654contigH-elongata_contig59654:223..1871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue3.4e-24
Seed eggNOG ortholog2880.D7G1U7
EggNOG OGs2D10K@1,2SG93@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size483
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59654.13485.1prot_H-elongata_contig59654.13485.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59654 223..1871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.4617662-CDS-H-elongata_contig59654:222..3951622930966.4617662-CDS-H-elongata_contig59654:222..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59654 223..395 -
1691679643.558882-CDS-H-elongata_contig59654:222..3951691679643.558882-CDS-H-elongata_contig59654:222..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59654 223..395 -
1622930966.4735277-CDS-H-elongata_contig59654:933..11181622930966.4735277-CDS-H-elongata_contig59654:933..1118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59654 934..1118 -
1691679643.5728467-CDS-H-elongata_contig59654:933..11181691679643.5728467-CDS-H-elongata_contig59654:933..1118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59654 934..1118 -
1622930966.4874537-CDS-H-elongata_contig59654:1746..18711622930966.4874537-CDS-H-elongata_contig59654:1746..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59654 1747..1871 -
1691679643.5823174-CDS-H-elongata_contig59654:1746..18711691679643.5823174-CDS-H-elongata_contig59654:1746..1871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59654 1747..1871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59654.13485.1

>prot_H-elongata_contig59654.13485.1 ID=prot_H-elongata_contig59654.13485.1|Name=mRNA_H-elongata_contig59654.13485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
ANGGNVERTVEHLLGNPTGVSNTGGVGVSGGGAEGRGGTARTDHDAALAL
QLAREWGDDPTIVPPPPTRPVGIPSPYDRPAAGVSRGIQGGVHTAVGMGS
AQQGLIGAAATENRTEGVNGRRGRRVALPENFLRAPGWRAGGKVSSDPQV
AADARLAMMLQ
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mRNA from alignment at H-elongata_contig59654:223..1871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59654.13485.1 ID=mRNA_H-elongata_contig59654.13485.1|Name=mRNA_H-elongata_contig59654.13485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-elongata_contig59654:223..1871- (Himanthalia elongata Himel1 dioecious)
GCAAACGGTGGCAACGTGGAGCGCACCGTGGAGCATCTCTTGGGAAACCC
TACAGGCGTATCCAACACGGGTGGCGTGGGCGTATCCGGCGGCGGCGCCG
AGGGCAGGGGTGGTACGGCGAGAACGTGAGTCGTAACCGTACATACCACG
GGGGATCAACAGTTTTTAAAAGCTCTGTACCTCTCAGCGATCATCCTCTC
TCTGTTTTGCTGTTTGATTTTTTTAATTCTTAATTTTATTCATTTTAATT
TATTTTATTTTATTCAGTTATTATAGTTTTAATCTTGCTTGGTTAATTTA
TGTATTAAATATATTTGATCACACCCATCAATATCAGCACTCTACTATAA
ATATATCATTAGCAAAATGTTTACTTTTACAGTCATTCAAATACAGCAGT
CTATTATTAATATCTCACTAGCAGTAATTGTTAGAGACGGGGAGGGGGAG
GGGGGTTAATTAGGGTTCGATCTGTCGCGAACAATGCTTTTCAGTTATAA
TAGTGTAATGAGGTCTGGTGCGGGCGGATGGCACGCGCGGTAGCGTTTCA
GCCGAGCTAAGTTTGTAATCGTTCGTACGCACATAAAAATCACCCCGCCG
GGATTAGCTCTACAGCAGCAGCACATACAGGGTTAAGGCAACCCCGCGAG
GAAGGGAAATCTCAACAGGGAGCGAGGAATCTTCCCGCCGCCCCCTAGCC
GCGATTTTTTGTTTGTAAATACTAATGCGCTCGAAAATGTTTCTCGCACG
CAGGGACCACGACGCCGCCTTGGCGCTGCAGCTGGCGCGCGAGTGGGGCG
ATGACCCGACCATCGTACCACCTCCGCCGACGAGGCCTGTCGGTATCCCG
TCCCCTTACGATCGCCCCGCGGCTGGAGTCAGCAGAGGGATTCAAGGAGG
CGTTCATACGGCGGTGGGAATGGGAAGCGCACAGCAGGGTGTGTATGTAA
TCATTTTTCCATTTATGTGCGAGTCGCTGAACGCACTTGTTTCGTTTTTT
TGTCGTTATTACTATGTTTACTCGCGCGTCGTCCTATGTACTCTTGCTTT
GGCCCACTTTGGCGCAGCAATACAGCGGTACGCGTTTTCTTGAGTTTTTT
TTATCCGCGCGGAGGATATGAGTGGGTATCCGTGGGGCGGAGGCCGTTGG
GTTTTATAGCGGAATGAAGGCATTTTTTGTTCTAGGAGAGGGACGATATC
TGCTTGCACGTTAAACCGTGTCCGCGCCCGTACCTTGGTACATACTCTGC
GAACGTTTCGGGTGTGAACGTGGGGCGAGCGAGCGAGCGTGCAATATGTA
TTTATATAATATATATATAATCAAGTATTGTCGTGTAATTTGTCGAGCAT
TATTATAGTAAGATTACAACAGCCTCCGCCTCCCGTTTTAATCGCGCGTT
GTTCAGCAATTGGGCTCATTACCTCGTCCTGCCGCCCCCGCCCTCCCCTA
CTCCGGAAACGAAAAACGCCCCACAGGCCTCATTGGGGCTGCCGCCACCG
AGAACCGCACAGAAGGAGTCAACGGTCGACGGGGACGTAGGGTAGCGCTC
CCCGAGAACTTTCTGCGCGCGCCTGGTTGGCGTGCGGGTGGGAAGGTGTC
GAGCGATCCACAGGTCGCGGCGGACGCCAGGTTGGCGATGATGCTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig59654:223..1871-

>mRNA_H-elongata_contig59654.13485.1 ID=mRNA_H-elongata_contig59654.13485.1|Name=mRNA_H-elongata_contig59654.13485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig59654:223..1871- (Himanthalia elongata Himel1 dioecious)
GCAAACGGTGGCAACGTGGAGCGCACCGTGGAGCATCTCTTGGGAAACCC
TACAGGCGTATCCAACACGGGTGGCGTGGGCGTATCCGGCGGCGGCGCCG
AGGGCAGGGGTGGTACGGCGAGAACGCAAACGGTGGCAACGTGGAGCGCA
CCGTGGAGCATCTCTTGGGAAACCCTACAGGCGTATCCAACACGGGTGGC
GTGGGCGTATCCGGCGGCGGCGCCGAGGGCAGGGGTGGTACGGCGAGAAC
GGACCACGACGCCGCCTTGGCGCTGCAGCTGGCGCGCGAGTGGGGCGATG
ACCCGACCATCGTACCACCTCCGCCGACGAGGCCTGTCGGTATCCCGTCC
CCTTACGATCGCCCCGCGGCTGGAGTCAGCAGAGGGATTCAAGGAGGCGT
TCATACGGCGGTGGGAATGGGAAGCGCACAGCAGGGGACCACGACGCCGC
CTTGGCGCTGCAGCTGGCGCGCGAGTGGGGCGATGACCCGACCATCGTAC
CACCTCCGCCGACGAGGCCTGTCGGTATCCCGTCCCCTTACGATCGCCCC
GCGGCTGGAGTCAGCAGAGGGATTCAAGGAGGCGTTCATACGGCGGTGGG
AATGGGAAGCGCACAGCAGGGCCTCATTGGGGCTGCCGCCACCGAGAACC
GCACAGAAGGAGTCAACGGTCGACGGGGACGTAGGGTAGCGCTCCCCGAG
AACTTTCTGCGCGCGCCTGGTTGGCGTGCGGGTGGGAAGGTGTCGAGCGA
TCCACAGGTCGCGGCGGACGCCAGGTTGGCGATGATGCTACAGGCCTCAT
TGGGGCTGCCGCCACCGAGAACCGCACAGAAGGAGTCAACGGTCGACGGG
GACGTAGGGTAGCGCTCCCCGAGAACTTTCTGCGCGCGCCTGGTTGGCGT
GCGGGTGGGAAGGTGTCGAGCGATCCACAGGTCGCGGCGGACGCCAGGTT
GGCGATGATGCTACAG
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