mRNA_H-elongata_contig59635.13480.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59635.13480.1
Unique NamemRNA_H-elongata_contig59635.13480.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: D7FQZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ0_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 3.100e-67
Identity = 164/315 (52.06%), Postives = 182/315 (57.78%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLR-----------CANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAA-------DTGSPKIVPGGGVTEPPLPVVMEPGV------PARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLTCMDSLT+ENTGG+ VVVIGATNRPNDLD ALRRAGRFDREICLGVPDLA RARIL+VM SKMTL+GDVDF QI+KKTPGFVGADLSSLTKEAAVVAINRIF RLR           C+N        S+ P     +  A T      K RG + A        D+GS   V G G  EP L  V+          PA   A ++ +  A +   A +E A                                               VQPSAKREGFATVPGV+WSDVGALASVREEL LSILEPIA PE
Sbjct:  387 QLLTCMDSLTIENTGGKPVVVIGATNRPNDLDSALRRAGRFDREICLGVPDLAARARILEVMASKMTLAGDVDFQQIAKKTPGFVGADLSSLTKEAAVVAINRIFTRLRATRPPPITGDPCSNDNGNGGAPSTAPC---VAPPAATG-----KPRGGQDATVAPAHPEDSGS---VSGAGAAEPSLDSVVGDASGSLTTSPASSTAVQQGKKTAEVVG-AGAEDAXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQPSAKREGFATVPGVSWSDVGALASVREELGLSILEPIAYPE 683
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A835ZH15_9STRA (Putative ribosome biogenesis ATPase RIX7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH15_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.200e-66
Identity = 149/292 (51.03%), Postives = 171/292 (58.56%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFAR-LRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLTCMDSL++ENTGG+ V+VIGATNRPNDLD ALRRAGRFDREICLGVPD  GR RIL+VMC +M LSG+ D+  I+K+TPGFVGADLSSLTKEAAV+AINRIF + L C                       LT   D  KS   E   D  +P     G + E P P     G     L   E  +    A  A                             P      +   +TM+DFL AVKKVQPSAKREGFATVP VTW D+GALA+VREELSLS+LEPIA PE
Sbjct:  271 QLLTCMDSLSLENTGGKPVIVIGATNRPNDLDSALRRAGRFDREICLGVPDQQGRQRILEVMCGRMRLSGEFDYGAIAKRTPGFVGADLSSLTKEAAVIAINRIFRQVLSCM----------------------LTIKVD--KSGTDEVEVDA-APLSDVEGNMKEAPAPEAESNG-----LVEAEAPLIESTADTAPQ---------------------------PFGSRTRSGACITMDDFLEAVKKVQPSAKREGFATVPDVTWGDIGALAAVREELSLSLLEPIAHPE 505
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: W7U2G0_9STRA (Aaa atpase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2G0_9STRA)

HSP 1 Score: 222 bits (566), Expect = 4.080e-64
Identity = 147/311 (47.27%), Postives = 185/311 (59.49%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAA-VASSEQAVALAGIGN--VKGGDKAGVRVAFLGGPL--SPPQLAP--------------LSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPEV 876
            +LLTCMD+L++E TGG+ V+VIGATNRP+ LD ALRRAGRFDREI LGVPDL  R RIL+VM  KM LSGD D  +I+++TPG+VGADL+SLTKEAAV+AINRIF                           ++ AD  G K++G+E     GS K    G  T P  P+                R Y P A+ + +   A AL  +    ++  D +  +V  +  PL  SP   AP              L++TM DF +A+KKVQPSAKREGFA VP V+W DVGALA VREELS+S+LEPIA PE+
Sbjct:  182 QLLTCMDALSLEETGGKPVLVIGATNRPDALDAALRRAGRFDREISLGVPDLEARRRILEVMTKKMRLSGDFDLGEIARRTPGYVGADLASLTKEAAVLAINRIFR--------------------------SIVADTGGGKTKGKEGEVREGSDKE---GYDTIPSEPLT---------------RPYPPNASGLTTLTDAYALPAMDTDPLESSDLSSAKVVPVALPLPASPAPTAPXXXXXXXXXXXLASLAITMPDFFSALKKVQPSAKREGFAAVPDVSWQDVGALAPVREELSMSVLEPIAHPEI 448
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: K3WFD0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFD0_GLOUD)

HSP 1 Score: 219 bits (558), Expect = 3.400e-62
Identity = 138/291 (47.42%), Postives = 172/291 (59.11%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLT  DSL++ENTGG+ V++IGATNRP+ LD ALRRAGRFDREICLG+PD   R RILQV+  KM L G  DF  I+++TPGFVGADL SLTKEAAV+A+NRIF+ +      +P      L  E  +S S                  +   P++V    +TE                   EE++          +QA A             G+R      P +P QLAPLS+TM+DFL AV KVQPS+KREGFAT+P VTW+D+GALASVR+EL LSIL PI  PE
Sbjct:  257 QLLTSTDSLSLENTGGKPVLIIGATNRPDALDSALRRAGRFDREICLGIPDEDARERILQVLSQKMKLDGAFDFRAIARRTPGFVGADLVSLTKEAAVIAVNRIFSTMLATKPATPV-----LAVEPESSTS------------------NEEQPQVVEAPTLTE-------------------EEQV--------KQKQAAA------------DGIRSKVT--PFTPSQLAPLSITMDDFLQAVAKVQPSSKREGFATIPDVTWADIGALASVRDELVLSILHPIQNPE 483
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A8K1C7Y3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Y3_PYTOL)

HSP 1 Score: 218 bits (556), Expect = 8.250e-62
Identity = 135/291 (46.39%), Postives = 166/291 (57.04%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLT  DSL +ENTGG+ V++IGATNRP+ LD ALRRAGRFDREICLG+PD   R RILQV+ +KM LSGD DF  I++KTPGFVGADL SLTKEAAV+A+NRIF+ +                                                      +T PP     +P  P     S +  M        + ++A A+       G     +R      P +  QL PLS+TM DFLAA+ KVQPS+KREGFAT+P VTW+D+GALASVREEL LSIL+PI  PE
Sbjct:  293 QLLTSTDSLNLENTGGKPVLIIGATNRPDALDSALRRAGRFDREICLGIPDEDARERILQVLSAKMKLSGDFDFKAIARKTPGFVGADLVSLTKEAAVIAVNRIFSSM------------------------------------------------------LTAPP-----KPSTPIETAVSTDTPME-------NGDEAAAVDAASTADG-----IRSKVT--PFTAKQLEPLSITMADFLAAIVKVQPSSKREGFATIPDVTWADIGALASVREELVLSILQPIQHPE 510
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A3R7J339_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J339_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.380e-61
Identity = 136/291 (46.74%), Postives = 172/291 (59.11%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLT  DSL++ENTGG+ V++IGATNRP+ LD ALRRAGRFDREICLG+PD   R +IL+V+  KMTL GD DF  ++ +TPGFVGADL SLTKEAAV A+NRIF  +         ++S  + AE  ASVSA T   DG      + A +  +P+ +P                                      S+Q        N    D    +V     P +  QLAPLS+TM DF AA+ KVQPS+KREGFAT+P VTW D+GAL  +REELSL++L+PIA PE
Sbjct:  301 QLLTSTDSLSLENTGGKPVLLIGATNRPDALDSALRRAGRFDREICLGIPDDDAREKILRVLAHKMTLEGDFDFATLAHRTPGFVGADLVSLTKEAAVGAVNRIFTNIA-------PVKSLKVEAE-TASVSAETETSDGAS----DEAMEVDTPEEIP--------------------------------------SDQT------NNTSAADDFRAQVK----PFTEAQLAPLSITMADFEAAIPKVQPSSKREGFATIPDVTWDDIGALNGIREELSLAVLQPIAHPE 531
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A0W8CY25_PHYNI (Endo-beta-1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CY25_PHYNI)

HSP 1 Score: 213 bits (541), Expect = 1.390e-60
Identity = 131/291 (45.02%), Postives = 165/291 (56.70%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLT  DSL++ENTGG+ V++IGATNRP+ LD ALRRAGRFDREICLG+PD   R +IL+V+  KMTL GD DF  ++++TPG+VGADL SLTKEAAV A+NRIF  +                      V ALTA+ D          +D G+                 ME     + +   EE   A                       D    +V     P +  QLAPLS+TM DF AA+ KVQPS+KREGFAT+P VTW D+GAL  VR+ELSL++L+PIA PE
Sbjct:  173 QLLTSTDSLSLENTGGKPVILIGATNRPDALDSALRRAGRFDREICLGIPDEEAREKILRVLARKMTLEGDFDFPALARRTPGYVGADLVSLTKEAAVGAVNRIFTNINA--------------------VKALTAEVDATSVSADTETSDAGTSDDA-------------MEVDATQKTVDDAEEASSAA----------------------DDLRAQVK----PFTEAQLAPLSITMADFEAAIPKVQPSSKREGFATIPDVTWDDIGALNEVRDELSLAVLQPIAHPE 404
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A2D4BYX5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYX5_PYTIN)

HSP 1 Score: 214 bits (546), Expect = 2.850e-60
Identity = 132/291 (45.36%), Postives = 171/291 (58.76%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            +LLT  DSL++ NTGG+ V++IGATNRP+ LD ALRRAGRFDREICLG+PD A R RILQV+ SKM L+GD DF  I+++TPGFVGADL SLTKEAAV+A+NRIF+ +     T+ S RS++  A                                                      +            A  +++ Q+ A          D+   +V     P +P QLAPLS++M+DF+AA+ KVQPS+KREGFAT+P VTW+D+GALASVR+EL LSIL+PI  PE
Sbjct:  295 QLLTSTDSLSLANTGGKPVLIIGATNRPDALDSALRRAGRFDREICLGIPDEAARERILQVLSSKMKLAGDFDFKAIARRTPGFVGADLVSLTKEAAVIAVNRIFSTMLA---TASSARSAAATAP----------------------------------------------------TQXXXXXXXXXXXXAESSNNHQSTA----------DEIRSQVT----PFTPAQLAPLSISMQDFVAAISKVQPSSKREGFATIPDVTWADIGALASVRDELVLSILQPIQHPE 516
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A7S4IVS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVS2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.630e-60
Identity = 137/292 (46.92%), Postives = 165/292 (56.51%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENT-GGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPE 873
            + LTC+D L  +NT  G  V+V+ ATNRP+ +DPALRRAGRFDREI LGVPD   R  I++VM   M LSGD+D+  ++KKTPGFVGAD+ SLT+EAAV AINRIF  L  A           L     A V A      G   +G  S AD                                          AV SS+ +       N K  D A +       PL+P QLAP SVTM DFLAAV +VQPS+KREGFATVP V+WSD+GAL+SVREEL+LS+LEPI+ PE
Sbjct:    8 QFLTCLDGLNPDNTRNGAPVLVLAATNRPDSIDPALRRAGRFDREITLGVPDEKAREGIVRVMTRDMRLSGDMDYALLAKKTPGFVGADVRSLTREAAVEAINRIFRSLGLAG----------LGISSGAEVEAGA----GAMEKGDGSMAD-----------------------------------------GAVVSSDAS-------NGKDADAAAIASPRRRSPLNPTQLAPHSVTMSDFLAAVPRVQPSSKREGFATVPDVSWSDIGALSSVREELALSVLEPISHPE 237
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BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Match: A0A4D9CWL1_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWL1_9STRA)

HSP 1 Score: 215 bits (547), Expect = 8.100e-60
Identity = 140/308 (45.45%), Postives = 178/308 (57.79%), Query Frame = 1 
Query:    1 KLLTCMDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGRARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIFARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSPKIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALAGIGNVKGGDKAGVRVAFLGGPL--SPPQLAP--------------LSVTMEDFLAAVKKVQPSAKREGFATVPGVTWSDVGALASVREELSLSILEPIACPEV 876
            +LLTCMD+L++E TGG+ V+VIGATNRP+ LD ALRRAGRFDREI LGVPDL  R RIL+VM  KM LSGD D   I+++TPG+VGADL+SLTKEAAV+AINRIF                           ++ AD  G K++G+E                T P  P+    G+                 A  + E A+      +++  + + V+V  +  PL  SP   AP              L++TM DF +A+KKVQPSAKREGFA VP V+W DVGALA VREELS+S+LEPIA PE+
Sbjct:  421 QLLTCMDALSLEETGGKPVLVIGATNRPDALDAALRRAGRFDREISLGVPDLEARRRILEVMTKKMRLSGDFDLGAIARRTPGYVGADLASLTKEAAVLAINRIFR--------------------------SIVADTGGGKTKGKEGGDXXXXXXXXYD---TIPSEPLTRPSGL-----------------ATLTDECALPAMDTDSLESSNPSSVKVIPVALPLPTSPAPTAPXXXXXXXXXXXLASLAITMPDFFSALKKVQPSAKREGFAAVPDVSWQDVGALAPVREELSMSVLEPIAHPEI 682
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59635.13480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ0_ECTSI3.100e-6752.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZH15_9STRA2.200e-6651.03Putative ribosome biogenesis ATPase RIX7 n=1 Tax=T... [more]
W7U2G0_9STRA4.080e-6447.27Aaa atpase n=2 Tax=Nannochloropsis gaditana TaxID=... [more]
K3WFD0_GLOUD3.400e-6247.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1C7Y3_PYTOL8.250e-6246.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7J339_9STRA7.380e-6146.74Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0W8CY25_PHYNI1.390e-6045.02Endo-beta-1 n=4 Tax=Phytophthora TaxID=4783 RepID=... [more]
A0A2D4BYX5_PYTIN2.850e-6045.36Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S4IVS2_9STRA4.630e-6046.92Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A4D9CWL1_9STRA8.100e-6045.45Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59635contigH-elongata_contig59635:253..2897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue2.5e-57
Seed eggNOG ortholog2880.D7FQZ0
KEGG koko:K14571
KEGG Pathwayko03008,map03008
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.preribosome binding
EggNOG OGsCOG0464@1,KOG0733@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-09_003210.1
Exons3
Model size900
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59635.13480.1prot_H-elongata_contig59635.13480.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59635 253..2882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.903406-CDS-H-elongata_contig59635:252..4081622930965.903406-CDS-H-elongata_contig59635:252..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59635 253..408 -
1691679643.330325-CDS-H-elongata_contig59635:252..4081691679643.330325-CDS-H-elongata_contig59635:252..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59635 253..408 -
1622930965.922479-CDS-H-elongata_contig59635:955..15191622930965.922479-CDS-H-elongata_contig59635:955..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59635 956..1519 -
1691679643.3448918-CDS-H-elongata_contig59635:955..15191691679643.3448918-CDS-H-elongata_contig59635:955..1519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59635 956..1519 -
1622930965.9470587-CDS-H-elongata_contig59635:2717..28821622930965.9470587-CDS-H-elongata_contig59635:2717..2882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59635 2718..2882 -
1691679643.352597-CDS-H-elongata_contig59635:2717..28821691679643.352597-CDS-H-elongata_contig59635:2717..2882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59635 2718..2882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.9675465-UTR-H-elongata_contig59635:2882..28971622930965.9675465-UTR-H-elongata_contig59635:2882..2897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59635 2883..2897 -
1691679643.3601277-UTR-H-elongata_contig59635:2882..28971691679643.3601277-UTR-H-elongata_contig59635:2882..2897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59635 2883..2897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59635.13480.1

>prot_H-elongata_contig59635.13480.1 ID=prot_H-elongata_contig59635.13480.1|Name=mRNA_H-elongata_contig59635.13480.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=295bp
MDSLTMENTGGRAVVVIGATNRPNDLDPALRRAGRFDREICLGVPDLAGR
ARILQVMCSKMTLSGDVDFHQISKKTPGFVGADLSSLTKEAAVVAINRIF
ARLRCANSTSPSLRSSSLPAEDNASVSALTADDDGRKSRGRESAADTGSP
KIVPGGGVTEPPLPVVMEPGVPARRLASREERMYAPLAAVASSEQAVALA
GIGNVKGGDKAGVRVAFLGGPLSPPQLAPLSVTMEDFLAAVKKVQPSAKR
EGFATVPGVTWSDVGALASVREELSLSILEPIACPEVSVCCVSL*
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mRNA from alignment at H-elongata_contig59635:253..2897-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59635.13480.1 ID=mRNA_H-elongata_contig59635.13480.1|Name=mRNA_H-elongata_contig59635.13480.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2645bp|location=Sequence derived from alignment at H-elongata_contig59635:253..2897- (Himanthalia elongata Himel1 dioecious)
AAGCTCCTTACGTGTATGGATTCCCTGACGATGGAGAACACGGGCGGGAG
AGCCGTCGTGGTGATCGGAGCCACGAACCGTCCCAACGACCTTGACCCCG
CGCTGCGGAGGGCGGGACGGTTCGACCGCGAGATTTGCCTCGGGGTGCCG
GATTTGGCGGGGCGGGCGCGTATCCTGCAGGTGCGCGAATGCCGTAATCT
TCTATCTCTCAAATGAATGGTATGCTGTATCTGCCATTATGGTTTGGCAC
ACCATTGCGACAATTACAACCATTGTATTACGTTAAAACAGACAGATCGA
CAGGGCAGTTTAAATTTAAACCAACCCGTTAAGATTTTTTTGTTTGTTTT
TTTAAAGTCAGCCCCCACGCCATTTACACCATTTGTTTGTGTTACCGATT
CCACCTCCTGCAACCCTCCCTGCCCATCCCCATGCCCATCCCCATCCCCG
CCTAACTGTGGTCCCAAGGGATAAACCCATCTCTCCCCGTTTGGTTAACG
CCTCCTTACGATTTTAACTTTGCTGCTTCCTCCCGTTCTAATATAAATGA
AATAGTAATATTAGTAATATTATTAGTAAATAGTAATATAAATAATAATA
GCATTAGTAGTAGCAATAACAATAGTAATAATAGTAATAATAGTAGTAGT
AATAGTAATAGCAATACAGTGTAATTTGAGATTGGGGGATGGGGGTGAGG
GAGAGAGGGGGTTTCATGTTATCTTCCCCTCATCTATAGACTACCGCCAC
TGCTAAAATGCTACCGTTGTTGCCTTGTTTGAGTCGGGTGGCGTGCGTGA
CTTGACCCGATCTCCCTTTAAATCATTTTGGATTCGTTTTTAGGTTCAAT
ACACTTACATCAAACACAACAACTTGACAACCAGATCACGATGGTTAGGT
ATGTGTCTGCATGTTGCATGTTGCATGTTGCTGTAAGGATAAACAAAAAG
TGAACGCTGTCGGGACTCCGGAGGTAGATATTCACAGGGTCGCGTGTTCG
CATCGTGGCGTGATGGGCTGAAGAGGGGTCTATAAAGTTTTCTCTCTACC
AGGCTTTTCAGCCGTAGAACCTCCTAAACCCTTGCGGGACATGCCTCGAG
TTCGTCCCTATAGTGAGGGGACTCCTGTTGGGTTTGAAAATTAGTATATG
TGTAGCATGTGTAAATGGAGAACATAGAAAAAATGGACACTGTTCGGGCG
CTCCATGGAACATGCTTAAGAATTTCCGACCGTTGTACTTAAAACGGTGT
GGGCGTCTATGGGTGTAAACTTTCGCCCCGTGCATGTATGCCTCTTTAGT
CTCAAACACCTGGGGATATCCTCCCTCCCTCCCCCCTCTCACCCATTTTT
TCCTGAAAACGCCGAATATGTAATCCAGGTGATGTGCTCGAAGATGACCC
TGAGCGGCGACGTTGATTTCCACCAAATCTCCAAGAAGACTCCCGGTTTC
GTGGGCGCCGACCTGTCGTCCCTCACCAAGGAGGCCGCGGTGGTCGCCAT
CAATCGCATCTTCGCGCGCCTGAGATGCGCTAACTCGACATCTCCATCGC
TGCGCTCTTCCTCTCTCCCCGCTGAAGATAACGCCTCGGTCTCCGCCTTG
ACGGCAGATGACGATGGAAGAAAATCCCGTGGCCGCGAGTCGGCGGCAGA
CACGGGGTCTCCAAAGATTGTTCCCGGCGGAGGCGTTACCGAGCCACCGC
TTCCCGTGGTGATGGAACCCGGTGTCCCCGCTAGAAGGCTCGCTTCCCGA
GAGGAGAGGATGTACGCGCCTCTTGCGGCGGTGGCGTCGTCGGAGCAAGC
GGTAGCGTTAGCGGGTATAGGGAATGTCAAGGGAGGGGACAAAGCGGGGG
TTCGGGTAGCCTTTTTGGGGGGCCCTTTGTCCCCGCCGCAGCTCGCGCCG
TTGAGTGTCACCATGGAGGATTTTTTGGCGGCAGTCAAAAAGGTTAGTGT
GCTCATCAAACGATGTTTTTCGTGAGTCTACCAGGTATACTTTTACTTTT
ACTTTTACTTCGTATCTTTTCCGTTGGGTGTTTTCTTTTTAATTCTTTCC
TTTTTTTTGCATTTTTCTCTCTCTTTTTCTCGTTTGTGTGTTTGTGTGTG
TTACCTCTGACCCGATGTGACGAAGGAGACATATTATCTACATATTTATG
TATGTGTATTTTTTTAGGTTTCACATAATAGCGCAATCCAGCACTGTCAT
GTTAGTCATTCTAGGCTACTGTACTGTCATTGATCCTCCCAATGTGTGTG
TGTGTGTGTATATATGTGTTTGTGTGTGCTTTGGCGTTCTACCGACTTGG
GAATTGAAGAAGAGGGCTTTAGTGTGTCATCCGGGGACCGCTTTTGGCGA
CTGCGGTTGGCTGGGTAGCCTCCGTTGCTTCAAATTTATTTACTTTCAAC
AGTACTACATCCCCCCAACCTCACCTCCACCCCCCCAACCCCGCCACAAA
AACGCCGTTATCTGGTAACGAATGAATCCCAACTGGCAGGTCCAGCCGTC
CGCTAAGCGAGAGGGTTTCGCAACCGTGCCAGGCGTGACGTGGAGCGACG
TCGGGGCGCTCGCCTCTGTCCGAGAGGAGCTCAGCCTGTCCATCCTGGAA
CCGATTGCTTGTCCCGAGGTCTCCGTGTGCTGTGTATCTCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59635:253..2897-

>mRNA_H-elongata_contig59635.13480.1 ID=mRNA_H-elongata_contig59635.13480.1|Name=mRNA_H-elongata_contig59635.13480.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1770bp|location=Sequence derived from alignment at H-elongata_contig59635:253..2897- (Himanthalia elongata Himel1 dioecious)
ATGGATTCCCTGACGATGGAGAACACGGGCGGGAGAGCCGTCGTGGTGAT
CGGAGCCACGAACCGTCCCAACGACCTTGACCCCGCGCTGCGGAGGGCGG
GACGGTTCGACCGCGAGATTTGCCTCGGGGTGCCGGATTTGGCGGGGCGG
GCGCGTATCCTGCAGATGGATTCCCTGACGATGGAGAACACGGGCGGGAG
AGCCGTCGTGGTGATCGGAGCCACGAACCGTCCCAACGACCTTGACCCCG
CGCTGCGGAGGGCGGGACGGTTCGACCGCGAGATTTGCCTCGGGGTGCCG
GATTTGGCGGGGCGGGCGCGTATCCTGCAGGTGATGTGCTCGAAGATGAC
CCTGAGCGGCGACGTTGATTTCCACCAAATCTCCAAGAAGACTCCCGGTT
TCGTGGGCGCCGACCTGTCGTCCCTCACCAAGGAGGCCGCGGTGGTCGCC
ATCAATCGCATCTTCGCGCGCCTGAGATGCGCTAACTCGACATCTCCATC
GCTGCGCTCTTCCTCTCTCCCCGCTGAAGATAACGCCTCGGTCTCCGCCT
TGACGGCAGATGACGATGGAAGAAAATCCCGTGGCCGCGAGTCGGCGGCA
GACACGGGGTCTCCAAAGATTGTTCCCGGCGGAGGCGTTACCGAGCCACC
GCTTCCCGTGGTGATGGAACCCGGTGTCCCCGCTAGAAGGCTCGCTTCCC
GAGAGGAGAGGATGTACGCGCCTCTTGCGGCGGTGGCGTCGTCGGAGCAA
GCGGTAGCGTTAGCGGGTATAGGGAATGTCAAGGGAGGGGACAAAGCGGG
GGTTCGGGTAGCCTTTTTGGGGGGCCCTTTGTCCCCGCCGCAGCTCGCGC
CGTTGAGTGTCACCATGGAGGATTTTTTGGCGGCAGTCAAAAAGGTGATG
TGCTCGAAGATGACCCTGAGCGGCGACGTTGATTTCCACCAAATCTCCAA
GAAGACTCCCGGTTTCGTGGGCGCCGACCTGTCGTCCCTCACCAAGGAGG
CCGCGGTGGTCGCCATCAATCGCATCTTCGCGCGCCTGAGATGCGCTAAC
TCGACATCTCCATCGCTGCGCTCTTCCTCTCTCCCCGCTGAAGATAACGC
CTCGGTCTCCGCCTTGACGGCAGATGACGATGGAAGAAAATCCCGTGGCC
GCGAGTCGGCGGCAGACACGGGGTCTCCAAAGATTGTTCCCGGCGGAGGC
GTTACCGAGCCACCGCTTCCCGTGGTGATGGAACCCGGTGTCCCCGCTAG
AAGGCTCGCTTCCCGAGAGGAGAGGATGTACGCGCCTCTTGCGGCGGTGG
CGTCGTCGGAGCAAGCGGTAGCGTTAGCGGGTATAGGGAATGTCAAGGGA
GGGGACAAAGCGGGGGTTCGGGTAGCCTTTTTGGGGGGCCCTTTGTCCCC
GCCGCAGCTCGCGCCGTTGAGTGTCACCATGGAGGATTTTTTGGCGGCAG
TCAAAAAGGTCCAGCCGTCCGCTAAGCGAGAGGGTTTCGCAACCGTGCCA
GGCGTGACGTGGAGCGACGTCGGGGCGCTCGCCTCTGTCCGAGAGGAGCT
CAGCCTGTCCATCCTGGAACCGATTGCTTGTCCCGAGGTCTCCGTGTGCT
GTGTATCTCTGTGAGTCCAGCCGTCCGCTAAGCGAGAGGGTTTCGCAACC
GTGCCAGGCGTGACGTGGAGCGACGTCGGGGCGCTCGCCTCTGTCCGAGA
GGAGCTCAGCCTGTCCATCCTGGAACCGATTGCTTGTCCCGAGGTCTCCG
TGTGCTGTGTATCTCTGTGA
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