mRNA_H-elongata_contig5963.13479.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5963.13479.1
Unique NamemRNA_H-elongata_contig5963.13479.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5963.13479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5963contigH-elongata_contig5963:2462..3838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D8LR59
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size362
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5963.13479.1prot_H-elongata_contig5963.13479.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5963 2464..3838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.8122873-CDS-H-elongata_contig5963:2463..26001622930965.8122873-CDS-H-elongata_contig5963:2463..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 2464..2600 -
1691679643.2977655-CDS-H-elongata_contig5963:2463..26001691679643.2977655-CDS-H-elongata_contig5963:2463..2600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 2464..2600 -
1622930965.8277054-CDS-H-elongata_contig5963:3322..34581622930965.8277054-CDS-H-elongata_contig5963:3322..3458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 3323..3458 -
1691679643.3083115-CDS-H-elongata_contig5963:3322..34581691679643.3083115-CDS-H-elongata_contig5963:3322..3458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 3323..3458 -
1622930965.8463197-CDS-H-elongata_contig5963:3751..38381622930965.8463197-CDS-H-elongata_contig5963:3751..3838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 3752..3838 -
1691679643.3172736-CDS-H-elongata_contig5963:3751..38381691679643.3172736-CDS-H-elongata_contig5963:3751..3838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5963 3752..3838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5963.13479.1

>prot_H-elongata_contig5963.13479.1 ID=prot_H-elongata_contig5963.13479.1|Name=mRNA_H-elongata_contig5963.13479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
REAARKRLIVAFRGTEAWKDLLTDANFLLDELDRSESATVRPQAGEFAAA
AKSTTASWKKERVKPLPETLSQQKETLQEKINQVMDSSMDILRDLRTTSE
REDAPAAASTFDPSSEPGSR
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mRNA from alignment at H-elongata_contig5963:2462..3838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5963.13479.1 ID=mRNA_H-elongata_contig5963.13479.1|Name=mRNA_H-elongata_contig5963.13479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-elongata_contig5963:2462..3838- (Himanthalia elongata Himel1 dioecious)
AGAGAAGCCGCGAGGAAACGGTTGATCGTGGCCTTCCGCGGGACTGAGGC
ATGGAAAGATTTGCTCACGGACGCGAACTTTCTCTTGGTGAGACGGTCGC
GCGGCGGGTAGACAGGTAGCCAGGTGTAGGCTGTCCTGCTTCGTCAGGCT
TTGATCAACATATATGACGCGATGTTTCCCTCTCAAGAGCGACATTATCA
AGCCCTTCTGATCGGTAATCACTGGTGCTTGCGTGCCGACAGTAGACTGC
TAGCGGGCGTAGACAAAATATACAGCCAAAAAAATTACCACCAAGCATTA
CATCTGTACGACACCGACCTTCGCGCCTCTTCCTTTTAATGCCACGTTAT
GGACTGACGGGTCGTGGATACTGTGTGAAGGACGAGCTTGACCGATCGGA
ATCAGCCACGGTTAGGCCGCAGGCCGGTGAATTTGCGGCGGCCGCCAAGA
GCACCACCGCGAGTTGGAAAAAGGAGCGGGTCAAACCGCTTCCGGAGACG
CTCAGCCAACAGAAAGGTCCGATATGTTCCGGGCAACTTTAGCCGAGCTC
GAGCGAGCTCATTTCTTGGTTCGGTTACGGATCCTTGATCTTTTCGCGAG
AAGATTTGTGAAAGCCTGCGGACAGGAATGTAATTGACGCGTCCAACCAC
CAAGCATGTTGCAGCTGCTTCCACTTTGTTGTACGGAAGCTTTTTACTTC
CGAGGCCAGAGATTTTTGCGGTGCGAGTCGCGTGACTGTTGTTGTTGCCT
TCTTGCATCGTAGCAGCATCCACTGTTTATTTTTAAGGTGGCATGTTTAA
CCCCTTTGAGTGACTCTTTCGACGCCCTTCACAGTCGACTGTCATAGCGC
GAGCGCGATCTCTTGCCGCGGAAAAGTGTCTTCAACACAATGCGGAAAGG
TTGGCTAGGAGGAAGTTTTGGAGTTGCACATGAAGTATTTCCGAGGAGCT
CTTTCTTAGCGACAATGCGCATTGTTTACACCAGGGATGAAGTCTGTCCA
TGCTAGATTTTTTTCCCAGCGTGTACGATGCAGGGAAAAGGTTTCTCTCC
CTCTCATAACGCCACACTCTTAACATGGTAAATCTCGATGCAGCAGATGG
GATCCAAAGTCAATTGTCCAACGTCCTCAGCTCAATGTCCTCCTCCAAAT
CACGATCCCTGCGCCAAAATCCGCCTTTTCAGCAGCCACGGTTACGCCCT
CAACTTGCTGTCGATTCTACGCCCGCCCCTATTAATAGAAACTCTCCAAG
AGAAAATTAATCAGGTCATGGACAGCAGCATGGACATCCTTAGGGATCTC
AGGACCACTTCCGAGCGCGAGGATGCCCCCGCGGCGGCCTCTACGTTTGA
CCCTTCGTCTGAGCCCGGATCACGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig5963:2462..3838-

>mRNA_H-elongata_contig5963.13479.1 ID=mRNA_H-elongata_contig5963.13479.1|Name=mRNA_H-elongata_contig5963.13479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig5963:2462..3838- (Himanthalia elongata Himel1 dioecious)
AGAGAAGCCGCGAGGAAACGGTTGATCGTGGCCTTCCGCGGGACTGAGGC
ATGGAAAGATTTGCTCACGGACGCGAACTTTCTCTTGAGAGAAGCCGCGA
GGAAACGGTTGATCGTGGCCTTCCGCGGGACTGAGGCATGGAAAGATTTG
CTCACGGACGCGAACTTTCTCTTGGACGAGCTTGACCGATCGGAATCAGC
CACGGTTAGGCCGCAGGCCGGTGAATTTGCGGCGGCCGCCAAGAGCACCA
CCGCGAGTTGGAAAAAGGAGCGGGTCAAACCGCTTCCGGAGACGCTCAGC
CAACAGAAAGGACGAGCTTGACCGATCGGAATCAGCCACGGTTAGGCCGC
AGGCCGGTGAATTTGCGGCGGCCGCCAAGAGCACCACCGCGAGTTGGAAA
AAGGAGCGGGTCAAACCGCTTCCGGAGACGCTCAGCCAACAGAAAGAAAC
TCTCCAAGAGAAAATTAATCAGGTCATGGACAGCAGCATGGACATCCTTA
GGGATCTCAGGACCACTTCCGAGCGCGAGGATGCCCCCGCGGCGGCCTCT
ACGTTTGACCCTTCGTCTGAGCCCGGATCACGCAAACTCTCCAAGAGAAA
ATTAATCAGGTCATGGACAGCAGCATGGACATCCTTAGGGATCTCAGGAC
CACTTCCGAGCGCGAGGATGCCCCCGCGGCGGCCTCTACGTTTGACCCTT
CGTCTGAGCCCGGATCACGC
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