mRNA_H-elongata_contig59581.13470.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 352 bits (903), Expect = 5.100e-115 Identity = 167/286 (58.39%), Postives = 215/286 (75.17%), Query Frame = 3
Query: 366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
+G+ S +LGM + RDRE +TISQ+ Y + +++ +GM PT TPG G E+S QP + LL+E+E R+Y I G++MY+AQV RYDI+ QL R M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA P+SF+ GLQGLT STM+AELVA+AL MKEAVFCSNM+ +L F + F +P+Y DNT+ LH GNR++ R KHIALR+FF++ELV EGKISIHY TED LAD+GTKH +KH L+ LIN
Sbjct: 148 LGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLIN 433
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 350 bits (899), Expect = 1.140e-111 Identity = 167/286 (58.39%), Postives = 216/286 (75.52%), Query Frame = 3
Query: 366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
+G+ S LGM + RDRE +TISQ+ Y + +++ +GM PT TPG G E+S QP + LL+E+E R+Y I G++MY+AQV RYDI+ QL R+M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA P+SF+ GLQGLT STM+AELVA+AL MKEAVFCSNM+ +L + F +P+Y DNT+ LH GNR++ R KHIALR+FF++ELV EGKISIHYV TED LAD+GTKH +KH + L+ LIN
Sbjct: 369 LGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 351 bits (900), Expect = 1.830e-108 Identity = 166/286 (58.04%), Postives = 216/286 (75.52%), Query Frame = 3
Query: 366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
+G+ S +L M + RDRE +TISQ+ Y + +++ +GM PT TPG G E+S QP + LL+E+E R+Y I G++MY+AQV RYDI+ QL R M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA P+SF+ GLQGLT STM+AELVA+AL MKEAVFCSNM+ +L F + F +P+Y DNT+ LH GNR++ R KHIALR+FF++ELV EGKISIHYV+TED LAD+GTKH + H + L+ LIN
Sbjct: 708 LGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLIN 993
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 345 bits (886), Expect = 1.960e-103 Identity = 164/286 (57.34%), Postives = 215/286 (75.17%), Query Frame = 3
Query: 366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
+G+ S +LGM + RDRE +TISQ+ Y + +++ +G+ PT TPG G E+S QP + LL+E+E R+Y I G++MY+AQV RYDI+ QL R M+KP+K H+ A KH LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ +LA P+SF+ GLQGLT STM+AELVA+AL M EAVF SNM+ +L F + F +P+Y DNT+ LH GNR++ R KHIALR+FF++ELV EGKISIHYV TED LAD+GTKH +KH + L+ LIN
Sbjct: 1377 LGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 1662
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 325 bits (833), Expect = 5.630e-101 Identity = 153/281 (54.45%), Postives = 207/281 (73.67%), Query Frame = 3
Query: 378 SRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLI 1220
S I GM + RDRE+G ++IS++ Y++ ++ +GM +C PT TPG+GP S QP E LLN+EE RRY I G ++YL+Q+ RYDI+ +QL R M+KP+K H+GA K RYLAG+ F + YK+GGF+L AF+D+NWGNN DNG+STSS++ ML P++FK GLQ LT QSTM+ ELVAAAL +KEAVFCSN++ +L F + VPLY DNT+ LH GNR+Y KHIALR+FF++ELV EG+I+IHYV + AD+GTKHL+K ++L+ +I
Sbjct: 435 SLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNII 715
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 311 bits (796), Expect = 3.340e-95 Identity = 148/256 (57.81%), Postives = 195/256 (76.17%), Query Frame = 3
Query: 444 NYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILI 1211
NYT ++ +GM SC P T G GPELS+ QP E LLN E K+RY AI G+VMYLAQVTRYDI+ +Q RAMS P+K H+GA KHLLRYL+GS DFS+TYK+GGF L A S+ N G+N DNG+S SSYI+M++ P S K GLQ LT ST++AELVA+AL MKE +FC+NM+ +L F F S PL+ID+T+ L+V GN+T+ KH+ALR+F+++++V+EG+ISIHY+ TED LAD+GT++L+K H+ LI
Sbjct: 515 NYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLI 770
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 304 bits (779), Expect = 6.130e-91 Identity = 151/266 (56.77%), Postives = 192/266 (72.18%), Query Frame = 3
Query: 414 EKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILI 1211
E G +T SQ+NY ++ +GM S P T G GPELS AI G+V+YLAQ+TRYDI+ +QL RAMS P+K H+GA KHLLRYL+GS DFS+TYK+GGF L A SD NWGNN DN +S SSYI+M++K P+SFK GLQ LT ST++AELVAAAL MKE +FC+NM+ +L F F S PLYI NT+ LHV GN+T+ R KH+ALR+F+++E+V+EG+ISIHY+ TED LAD+GTKHL+K H+ LI
Sbjct: 436 EDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELS------------------AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLI 682
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 268 bits (684), Expect = 3.600e-85 Identity = 128/208 (61.54%), Postives = 158/208 (75.96%), Query Frame = 3
Query: 600 MYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLIN 1223
MY+AQV RYDI+ L R M+KP+K H K LRYLAG+ DFS+TYK+GGF+LA FSD+NW NN DNG+STSSY+ MLA P+SF+ GLQGLT STM+AELVA+AL MKEAVFCSNM+ +L F + F +P+Y DNT+ LH GNR++ R KHIALR+FF++ELV EGKISIHY TED LA +GTKH +KH + L+ IN
Sbjct: 1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRIN 208
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE) HSP 1 Score: 276 bits (706), Expect = 8.700e-85 Identity = 141/257 (54.86%), Postives = 179/257 (69.65%), Query Frame = 3
Query: 366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIH 1136
+G+VS +LGM VTRD E G +TI+Q +YT ++ +GME C PT P +G ELS QP E +LN+E+ + +QL R MSK AKAH+GA KHLLR G+ DF +TYK+GGF+L AFSD NW +N DN RSTSSY++M++K P+SFK GLQ LT STM+AEL+AAALTMKEAVFCSNM+ +L F + FG VPLYI+NT+ LHV GN+ Y R KHIAL +F V+ELV+EG I+IH
Sbjct: 271 LGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQ------------------------SQLARVMSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 265 bits (677), Expect = 4.660e-83 Identity = 133/285 (46.67%), Postives = 191/285 (67.02%), Query Frame = 3
Query: 366 MGDVSRILGMNVTRDREKGNITISQKNYTEDMVQCYGMESCNPTYTPGIGPELSLNQP*EKLLNEEEKRRYHAITGAVMYLAQVTRYDILNVVNQLVRAMSKPAKAHLGAVKHLLRYLAGSADFSLTYKQGGFRLAAFSDTNWGNNLDNGRSTSSYIVMLAKVPISFKVGLQGLTEQSTMKAELVAAALTMKEAVFCSNMILKLDFNESFGSVPLYIDNTSALHVTGNRTYRPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTKHLSKHLHRILIKLI 1220
MG+V R++G+ V RD E G + ISQ Y D++Q YGME NP TPG G ELS QP ++LL EEK+R+ ITG+++YLAQ TRYD+ V+QL RA + PA+ H+ A KHLLRYL G+ D + YK+G FRL+ F+D+++G N DNGRST+ Y+ L IS+ Q L Q+T++AEL A + + +EAV+ SN + ++ F ++F SVP+ D+T AL V N + R KHIALR+FF++EL + +I++H+ + LAD+ TKHL K +++LI
Sbjct: 9 MGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59581.13470.1 >prot_H-elongata_contig59581.13470.1 ID=prot_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKback to top mRNA from alignment at H-elongata_contig59581:2412..3634- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59581.13470.1 ID=mRNA_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1223bp|location=Sequence derived from alignment at H-elongata_contig59581:2412..3634- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59581:2412..3634- >mRNA_H-elongata_contig59581.13470.1 ID=mRNA_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig59581:2412..3634- (Himanthalia elongata Himel1 dioecious)back to top |