mRNA_H-elongata_contig59578.13469.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59578.13469.1
Unique NamemRNA_H-elongata_contig59578.13469.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59578.13469.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.600e-7
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   67 LLKEQLTVASADASRFRAELIEASMKAKQATEALGGERQSRLRAEAREEDER 222
            LLKEQL  AS ++S FRAEL+EA MKA+QA E L  E+++RLRAE +EEDER
Sbjct:  733 LLKEQLMNASRESSEFRAELVEARMKAQQAIETLAVEKEARLRAETKEEDER 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59578.13469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJH6_9PHAE2.600e-765.38Kinesin motor domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59578contigH-elongata_contig59578:1502..2886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size225
Cds size222
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59578.13469.1prot_H-elongata_contig59578.13469.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59578 1502..2885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.7288423-CDS-H-elongata_contig59578:1501..15821622930964.7288423-CDS-H-elongata_contig59578:1501..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59578 1502..1582 +
1691679642.991053-CDS-H-elongata_contig59578:1501..15821691679642.991053-CDS-H-elongata_contig59578:1501..1582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59578 1502..1582 +
1622930964.7467763-CDS-H-elongata_contig59578:2365..24371622930964.7467763-CDS-H-elongata_contig59578:2365..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59578 2366..2437 +
1691679643.00237-CDS-H-elongata_contig59578:2365..24371691679643.00237-CDS-H-elongata_contig59578:2365..2437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59578 2366..2437 +
1622930964.7679067-CDS-H-elongata_contig59578:2816..28851622930964.7679067-CDS-H-elongata_contig59578:2816..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59578 2817..2885 +
1691679643.0147424-CDS-H-elongata_contig59578:2816..28851691679643.0147424-CDS-H-elongata_contig59578:2816..2885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59578 2817..2885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59578.13469.1

>prot_H-elongata_contig59578.13469.1 ID=prot_H-elongata_contig59578.13469.1|Name=mRNA_H-elongata_contig59578.13469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
ESLLKELLSRDSGMASLTAEINLLKEQLTVASADASRFRAELIEASMKAK
QATEALGGERQSRLRAEAREEDER
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mRNA from alignment at H-elongata_contig59578:1502..2886+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59578.13469.1 ID=mRNA_H-elongata_contig59578.13469.1|Name=mRNA_H-elongata_contig59578.13469.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1385bp|location=Sequence derived from alignment at H-elongata_contig59578:1502..2886+ (Himanthalia elongata Himel1 dioecious)
GAGAGCCTCTTGAAGGAGCTGTTATCTCGGGACTCCGGCATGGCATCTCT
CACCGCTGAGATCAACCTCCTCAAGGAGCAGGCAAGGCAGAGAGAGAGAC
AAATAGAAGGGAGGAAGAAGAAAAAACACTCATGTCGGCGCTCGTGTCCG
CGTCCGTTTGTTTTGTGTGTTTTGGTGGCTTTAGTGTAATGTAATTAGTT
TTCTTGTAATTCGTGTGTGTGTGTATTTATTAAATAGCATATAACCGCGC
AATCCGGCTCTGTCATGCTAGTCCTTCTAGACTGCTCTCGCATTGAGTTG
TGTGTGCATGTGTGTGTGTGTGTGTGTATATTTATTAATTTGCACATAAT
CGCGCAATCCGGCGCTGTCATGCTAGTCCTTCTAGGCTACTCTCGCATTG
ATCCTCCCAATGGGGGGTGATTCAATCATATTTGCTACAAACACCTCTAT
TAATGATATTAATGATCAGACGTGTCAAAGGAGACATACTATCGCTACAT
TTCGTGCCTAAACCGTCAATACCTTGCGCTTCCCTCTCTACTTCCTTGTT
CACCATATAGCTATATAGCTTCGGTCGGCCCCTAATGGACCAACCCTCTC
CCGTCTGCCTTTTTTTCCCTGCTACCAAACGTGTGTGTGTGTTTGTGGGG
TTTTTTCTCCCTTTTTCTGTTTTCGCCCTATTCGGCGAGTCAAATAACGG
CAACTATAGCACTATAGCGAGGTGTGGCCAATAACACACAACGACAGTGC
GTACGACACACGTACTCCCCGCTTTCCACCTTTCGCTTACGATCAACCTT
CTCCGTGATGCCGTGACGTGTTGTTGTTTTCCCTTGGCCCTCTGCTCGAC
CGCGTGTGCTGCAGCTCACGGTGGCTAGCGCGGACGCTTCGAGGTTCCGC
GCGGAGCTTATCGAGGCCAGCATGAAAGCGAAACAGGTGTTGGTCTCGGT
GTAACGGATATTTAATGATTTAATGACGTACAAAACGCTTTGTTTGGTTG
ATTTATTTTGAAGGCAGAGAGACGTACAGGACGCTTCGTGATTAGTATAG
TATTGTAATGGATGGACAAACACACCAAGCCACGGCATGTATCTCTTGAG
ACGCTCCTACCCGAAATGCTGCTGCTGCTGCTGCTGCTGCTGATGCCGGA
ACCGTTCCTCGAAAATGAATCCTTCGCCCTCTCCGCTCCCCATGTTCCCG
AGGACGCGTGGTCAATAGTCAATGGTCTGTCAACTAAGGAATCCAAAACT
CGAGGACACTCCCCCCCCCCGACCCACTCTATTTCCGCCTCTTCCTGCCC
ACCTGCCCGAGGCAGGCGACTGAGGCTCTTGGAGGGGAGAGGCAGTCCAG
ACTCCGTGCCGAGGCGAGAGAGGAAGACGAGCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig59578:1502..2886+

>mRNA_H-elongata_contig59578.13469.1 ID=mRNA_H-elongata_contig59578.13469.1|Name=mRNA_H-elongata_contig59578.13469.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig59578:1502..2886+ (Himanthalia elongata Himel1 dioecious)
GAGAGCCTCTTGAAGGAGCTGTTATCTCGGGACTCCGGCATGGCATCTCT
CACCGCTGAGATCAACCTCCTCAAGGAGCAGGAGAGCCTCTTGAAGGAGC
TGTTATCTCGGGACTCCGGCATGGCATCTCTCACCGCTGAGATCAACCTC
CTCAAGGAGCAGCTCACGGTGGCTAGCGCGGACGCTTCGAGGTTCCGCGC
GGAGCTTATCGAGGCCAGCATGAAAGCGAAACAGCTCACGGTGGCTAGCG
CGGACGCTTCGAGGTTCCGCGCGGAGCTTATCGAGGCCAGCATGAAAGCG
AAACAGGCGACTGAGGCTCTTGGAGGGGAGAGGCAGTCCAGACTCCGTGC
CGAGGCGAGAGAGGAAGACGAGCGCGCGACTGAGGCTCTTGGAGGGGAGA
GGCAGTCCAGACTCCGTGCCGAGGCGAGAGAGGAAGACGAGCGC
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