mRNA_H-elongata_contig59550.13468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59550.13468.1
Unique NamemRNA_H-elongata_contig59550.13468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: D7G6D9_ECTSI (Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6D9_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 4.270e-104
Identity = 212/425 (49.88%), Postives = 249/425 (58.59%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGV--VQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSELLDPP-----PQSLSSPADVGDEEPRGTVRGDRISEDSVLKNSRFASSSSSRRGTKDDSRQRQRGVASDEGQGKGMLFCQP--------PLSK----HRATGQGRRTGKPGITGASPPDGDD-----FVNEAEVDL----------------------------DEASGINTVPLLLGRPPFPVSMAVLTPHAKAMIRDVLKTYMATMGPDLARRIILKLYG 1119
            QVSVHGDEP EVT   FRRFLVDSPL+RE++GG     ++ + R   +   P  H G   V+G   +E     E R  DSL+VPYGSYHQLYRID +LIAVGVVD+LPKCLSSVYCFYDPDYRAL+LGKLTAL ETEF+REA  +RPALRDYYMGFYIHTCPKMSYKGSY PS LLCPE+L WVPLELCRPVLD  KYA LS LL  P     P  + S +D G     GT R    S  SV     F SS     G     R  QR  A  EG        Q         PLS      R  GQGR       +  S   G+      F  E   ++                            DEASGIN +PL++G P FPV+ + LTPH++A++RDVL  Y+AT+G DLA+ ++LKL+G
Sbjct:  494 QVSVHGDEPSEVTPDQFRRFLVDSPLIRETIGGASVRPRNPSFRRGPTGGSPF-HVGDCGVEGNADSESSEMTEGR--DSLSVPYGSYHQLYRIDGKLIAVGVVDVLPKCLSSVYCFYDPDYRALALGKLTALKETEFIREASVVRPALRDYYMGFYIHTCPKMSYKGSYTPSFLLCPERLTWVPLELCRPVLDVHKYACLSSLLGSPVPAARPSQVISGSDAG--VGNGTQRRRSGSMGSV--GGGFGSSGRPAAG----GRFPQRDAADSEGARGSRATGQTSPSSGSFSPLSSLSPDRREVGQGRSRNVYSSSARSIQAGESAATSRFGRETRGEMMGIAAAAAAARRFXXXXXXXXXXXXXXADEASGINDIPLMVGEPSFPVNFSALTPHSQALVRDVLSKYVATVGSDLAKNVVLKLHG 907
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: A0A836CDE0_9STRA (Arginine-tRNA-protein transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE0_9STRA)

HSP 1 Score: 217 bits (552), Expect = 6.730e-62
Identity = 111/203 (54.68%), Postives = 136/203 (67.00%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSELL 609
            QV+VHGD+P E T   F+RFLVD PL+ +S            R +S  ++     D       G E          D  +VP GSYHQLYRI+ RLIAVGVVDILP+CLSSVYCFYDP YRALSLGKLTA  E E+V+ A ++RP  + YY+G+YIH+C KM YKG+Y PS LLCPE+  WVPL LC+P+LDR+ Y RLS+LL
Sbjct:  269 QVAVHGDKPNECTPKQFKRFLVDGPLVHDS---------QLDRHDSAVQAQGDDSDANANASAGTEY---------DEASVPCGSYHQLYRINGRLIAVGVVDILPRCLSSVYCFYDPAYRALSLGKLTAFKEIEWVQAASAVRPNFQYYYLGYYIHSCEKMRYKGNYNPSDLLCPERREWVPLALCKPLLDRQSYGRLSDLL 453
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: A0A7S3UVS4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVS4_HETAK)

HSP 1 Score: 201 bits (511), Expect = 3.410e-58
Identity = 108/201 (53.73%), Postives = 130/201 (64.68%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLT-VPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSL-RPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARL 597
            Q+ VHGD+  +VT  SF RFLV+SPL  ++       GQ+    E+  +            G G EEG        D+L  VP+GSYH LYR D  L+AVGVVD+LP+CLSSVY FYDPDYR L LGKLTAL E E+VR A +  RP LR YY+G+YIH CPKM YKG YAPS+LLCPE   WVPL   +P+L+ RKY RL
Sbjct:    3 QMRVHGDKEEDVTEKSFTRFLVNSPLFNQN-------GQNPVAPEAREKD-----------GGGGEEGAGEPFPVTDALVRVPFGSYHMLYRHDGALVAVGVVDVLPRCLSSVYAFYDPDYRHLVLGKLTALKEIEWVRRAAAAARPGLRFYYLGYYIHDCPKMRYKGEYAPSALLCPETYRWVPLTGAQPLLNERKYCRL 185
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: A0A4W6C822_LATCA (Arginyl-tRNA--protein transferase 1 n=5 Tax=Carangaria TaxID=1489904 RepID=A0A4W6C822_LATCA)

HSP 1 Score: 176 bits (446), Expect = 6.110e-47
Identity = 94/217 (43.32%), Postives = 116/217 (53.46%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSELLDPPPQSLSSPADVG 651
            Q+++HGDEPCE     FRRFL DSPL  E                  S  GP                            V YGS+HQ Y +D R++AVGV+DILP C+SSVY +Y PD+ +LSLG  +AL E  F R+     P L  YY+GFYIH+CPKM YKG Y PS LLCPE   WVP+E C P L+  +YAR ++  DP      +  DVG
Sbjct:  280 QMAIHGDEPCECNETQFRRFLCDSPLEAEH-----------------SPDGP---------------------------EVGYGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCLPHLENSRYARFNQ--DPDAGDARALKDVG 450
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: H3C2F8_TETNG (Arginyl-tRNA--protein transferase 1 n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C2F8_TETNG)

HSP 1 Score: 176 bits (445), Expect = 9.000e-47
Identity = 89/202 (44.06%), Postives = 111/202 (54.95%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYG-DSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSE 603
            Q++VHGD+P E +   FRRFL DSPL                                             EA Y  D  T+ YGS+HQ Y +D +++AVGV+DILP C+SSVY +Y PDY +LSLG  +AL E  F R+     P L  YY+GFYIH+CPKM YKG Y PS LLCPE   WVP+E C P LD  +YAR ++
Sbjct:  283 QMAVHGDDPSECSETQFRRFLCDSPL---------------------------------------------EAEYSVDGPTMGYGSFHQQYWLDGKIVAVGVIDILPTCVSSVYLYYHPDYASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETFAWVPIEQCTPHLDHARYARFNQ 439
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: A0A0D3EHK3_BRAOL (Arginyl-tRNA--protein transferase n=6 Tax=Brassica TaxID=3705 RepID=A0A0D3EHK3_BRAOL)

HSP 1 Score: 177 bits (448), Expect = 1.470e-46
Identity = 96/218 (44.04%), Postives = 125/218 (57.34%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLL--RESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVP---YGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSELLDPPPQSLSSP 639
            Q+ VH D P  V   S++RFLVDSPL+  + S GG  EE                                           VP   +GS+HQ YR+D RL+AVGVVDILPKCLSSVY F+DPDY  LSLGK +A+ E  +VRE+ +  P+L  YY+G+YIH+C KM YK +Y PS LLCP +  WVP E+ RP+LD+++Y  LS++ +   QS   P
Sbjct:  317 QLKVHKDNPSRVVESSYKRFLVDSPLIYVQPSGGGDDEE-----------------------------------------KVVPPCGFGSFHQQYRVDGRLVAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAIQEINWVRESQARCPSLEYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFKWVPFEVARPLLDKKRYVILSDIKESQNQSSLLP 493
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: V4N4Z4_EUTSA (Arginyl-tRNA--protein transferase n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4N4Z4_EUTSA)

HSP 1 Score: 172 bits (436), Expect = 1.480e-46
Identity = 93/202 (46.04%), Postives = 116/202 (57.43%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSEL 606
            Q+ VH D+P  V   S+RRFLVDSPL+                        P G + V   G                    +GS+HQ YR+D RLIAVGVVDILPKCLSSVY F+DPDY  LSLGK +AL E  +VRE     P L+ YY+G+YIH+C KM YK +Y PS LLCP +  WVP E+ RP+LD++ Y  LS++
Sbjct:   95 QLKVHNDKPGHVVESSYRRFLVDSPLIYVQ---------------------PSGDEKVPPCG--------------------FGSFHQQYRVDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSALQEINWVRENQVHCPTLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFRWVPFEVARPLLDKKPYVILSDI 255
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: A0A672IUF7_SALFA (Arginyl-tRNA--protein transferase 1 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IUF7_SALFA)

HSP 1 Score: 174 bits (441), Expect = 2.880e-46
Identity = 90/204 (44.12%), Postives = 110/204 (53.92%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSELLD 612
            Q++VHGD+P E     FRRFL DSPL  ES     E G                                            YGS+HQ Y +D R++AVGV+DILP C+SSVY +Y PD+ +LSLG  +AL E  F R+     P L  YY+GFYIH+CPKM YKG Y PS LLCPE   WVP+E C P LD  +YARL++  D
Sbjct:  279 QMAVHGDDPSECNESQFRRFLCDSPLEAESSPDGPEMG--------------------------------------------YGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCTPKLDNSRYARLNQDAD 438
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: A0A672IUF1_SALFA (Arginyl-tRNA--protein transferase 1 n=3 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IUF1_SALFA)

HSP 1 Score: 174 bits (441), Expect = 3.720e-46
Identity = 90/204 (44.12%), Postives = 110/204 (53.92%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSELLD 612
            Q++VHGD+P E     FRRFL DSPL  ES     E G                                            YGS+HQ Y +D R++AVGV+DILP C+SSVY +Y PD+ +LSLG  +AL E  F R+     P L  YY+GFYIH+CPKM YKG Y PS LLCPE   WVP+E C P LD  +YARL++  D
Sbjct:  288 QMAVHGDDPSECNESQFRRFLCDSPLEAESSPDGPEMG--------------------------------------------YGSFHQQYWLDGRIVAVGVIDILPTCVSSVYLYYHPDFASLSLGSYSALREIAFTRQLQKQSPKLSYYYLGFYIHSCPKMRYKGQYRPSDLLCPETYVWVPIERCTPKLDNSRYARLNQDAD 447
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BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Match: M4CY30_BRARP (Arginyl-tRNA--protein transferase n=7 Tax=Brassica TaxID=3705 RepID=M4CY30_BRARP)

HSP 1 Score: 175 bits (444), Expect = 8.340e-46
Identity = 91/205 (44.39%), Postives = 117/205 (57.07%), Query Frame = 1 
Query:    1 QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRSGPLGHDGVVQGGVGAEEGRAREARYGDSLTVP---YGSYHQLYRIDNRLIAVGVVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDYYMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLSEL 606
            Q+ VH D P  V   S+RRFLVDSPL+     G  +E                                           VP   +GS+HQ YR+D RL+AVGVVDILPKCLSSVY F+DPDY  LSLGK +A+ E  +VRE  +  P+L  YY+G+YIH+C KM YK +Y PS LLCP +  WVP E+ RP+LD+++Y  LS++
Sbjct:  311 QLKVHNDNPSHVVESSYRRFLVDSPLIYVQPSGENDE-----------------------------------------KVVPPCGFGSFHQQYRVDGRLVAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAIQEINWVRENQARCPSLEYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFKWVPFEVSRPLLDKKRYVILSDI 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59550.13468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D9_ECTSI4.270e-10449.88Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CDE0_9STRA6.730e-6254.68Arginine-tRNA-protein transferase n=1 Tax=Tribonem... [more]
A0A7S3UVS4_HETAK3.410e-5853.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4W6C822_LATCA6.110e-4743.32Arginyl-tRNA--protein transferase 1 n=5 Tax=Carang... [more]
H3C2F8_TETNG9.000e-4744.06Arginyl-tRNA--protein transferase 1 n=1 Tax=Tetrao... [more]
A0A0D3EHK3_BRAOL1.470e-4644.04Arginyl-tRNA--protein transferase n=6 Tax=Brassica... [more]
V4N4Z4_EUTSA1.480e-4646.04Arginyl-tRNA--protein transferase n=2 Tax=Eutrema ... [more]
A0A672IUF7_SALFA2.880e-4644.12Arginyl-tRNA--protein transferase 1 n=1 Tax=Salari... [more]
A0A672IUF1_SALFA3.720e-4644.12Arginyl-tRNA--protein transferase 1 n=3 Tax=Salari... [more]
M4CY30_BRARP8.340e-4644.39Arginyl-tRNA--protein transferase n=7 Tax=Brassica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59550contigH-elongata_contig59550:209..2351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue3.8e-90
Seed eggNOG ortholog2880.D7G6D9
Preferred nameate-1
KEGG rclassRC00055,RC00064
KEGG koko:K00685
KEGG ReactionR03862
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
EggNOG free text desc.arginyltransferase activity
EggNOG OGsCOG2935@1,KOG1193@2759
EC2.3.2.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size1122
Cds size1122
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59550.13468.1prot_H-elongata_contig59550.13468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59550 209..2351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.5904045-CDS-H-elongata_contig59550:208..3911622930964.5904045-CDS-H-elongata_contig59550:208..391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 209..391 +
1691679642.9440382-CDS-H-elongata_contig59550:208..3911691679642.9440382-CDS-H-elongata_contig59550:208..391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 209..391 +
1622930964.6076765-CDS-H-elongata_contig59550:658..8021622930964.6076765-CDS-H-elongata_contig59550:658..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 659..802 +
1691679642.9565988-CDS-H-elongata_contig59550:658..8021691679642.9565988-CDS-H-elongata_contig59550:658..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 659..802 +
1622930964.6266987-CDS-H-elongata_contig59550:1276..13661622930964.6266987-CDS-H-elongata_contig59550:1276..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 1277..1366 +
1691679642.9672031-CDS-H-elongata_contig59550:1276..13661691679642.9672031-CDS-H-elongata_contig59550:1276..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 1277..1366 +
1622930964.6454031-CDS-H-elongata_contig59550:1646..23511622930964.6454031-CDS-H-elongata_contig59550:1646..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 1647..2351 +
1691679642.9788125-CDS-H-elongata_contig59550:1646..23511691679642.9788125-CDS-H-elongata_contig59550:1646..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59550 1647..2351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59550.13468.1

>prot_H-elongata_contig59550.13468.1 ID=prot_H-elongata_contig59550.13468.1|Name=mRNA_H-elongata_contig59550.13468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=374bp
QVSVHGDEPCEVTRVSFRRFLVDSPLLRESLGGVIEEGQDTTRRESGSRS
GPLGHDGVVQGGVGAEEGRAREARYGDSLTVPYGSYHQLYRIDNRLIAVG
VVDILPKCLSSVYCFYDPDYRALSLGKLTALMETEFVREAGSLRPALRDY
YMGFYIHTCPKMSYKGSYAPSSLLCPEKLCWVPLELCRPVLDRRKYARLS
ELLDPPPQSLSSPADVGDEEPRGTVRGDRISEDSVLKNSRFASSSSSRRG
TKDDSRQRQRGVASDEGQGKGMLFCQPPLSKHRATGQGRRTGKPGITGAS
PPDGDDFVNEAEVDLDEASGINTVPLLLGRPPFPVSMAVLTPHAKAMIRD
VLKTYMATMGPDLARRIILKLYG*
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mRNA from alignment at H-elongata_contig59550:209..2351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59550.13468.1 ID=mRNA_H-elongata_contig59550.13468.1|Name=mRNA_H-elongata_contig59550.13468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2143bp|location=Sequence derived from alignment at H-elongata_contig59550:209..2351+ (Himanthalia elongata Himel1 dioecious)
CAGGTAAGCGTGCACGGCGATGAACCGTGTGAGGTCACGCGCGTCTCCTT
CCGACGCTTCTTGGTGGACAGCCCTCTCCTCCGCGAATCCTTGGGCGGGG
TGATTGAAGAAGGGCAAGACACCACTCGCCGCGAGTCGGGGAGCAGGTCG
GGTCCGCTGGGCCACGACGGCGTCGTACAAGGGGTGAGTCAGTTGATCTC
ATTGTCCGAGAGGTTGATACGTGATCGGCGCGGATAGTGTTCAAGCTCGC
GCCGTGTTGCGATGCCCTCAAAGGTACACGCCGCGAGAATAAGCAGTGCA
GCTGTTGCCCCTGACATCGATCCACGCCGATCCCCTCCATTTTCTCGAGT
TTATTTATTCCATCCGCGACAAGAACTGGCAATCTCATGGAGATTGGTTG
AAGCGTGGTGATTTGTGGGCGATGGACCTCCTGTGCTTGGTGCGTCGCAG
GGAGTGGGCGCGGAAGAAGGGAGAGCGCGGGAGGCGAGGTATGGTGACAG
CCTGACGGTGCCCTACGGAAGCTACCACCAACTGTACCGAATCGACAACC
GGCTGATCGCCGTAGGGGTTGTGGATATTCTGCCGAAGTGTCTGGTGAGC
CCGACTTGACACCCCTTCGTTTTGCTTCTCTCGAGGAAACAAAACGGTTC
GATGCGTCTGGGGGCGCTGTGTTCGTGTGAAGATAAATAGAAGGCAGTTT
TTGGCTCGTTGGCGAGGATTTGCAGTGCGAACGGGCAAGTGGCCAAGCGC
AGGGTTCGATGAGACTACCTGTCGAGCCGCTAGACGTTCTCTAACCTGTT
CCGTGGGGTGTTTTATTTTATTTTGCGAGCGCGTGAAATACCAACACACC
TTTTGGACCTTGGAGTGATGGACGTTGTATTTTGGCCGTGTCAAGTGACG
ACCGGGATCTCCTCGGTGGAAGATCCCCGCGAAGCTCTTTCCGGCATGTA
TATAGCTCTCGTGGTACCAAACCGAGTAGATGACGCACCTGATTGTTTGA
TTGTTACGTAAATGCTCGCTAGCTAACTCTTGCGCTACGCCACCCCTGCG
GGTTTGCTCTAATACCAGTCGTCGGTGTACTGTTTCTACGACCCCGATTA
CCGGGCGCTGTCGCTGGGCAAGCTTACCGCGCTCATGGAAACAGAATTTG
TCAGAGAGGTGCGTACGAACGGAGTTCTATAATTATAATAGCACGCATCA
GCAAACCAGATACATCCACGGCAATTGTGCGTGCAGTTTTATGCTTACGC
GACCGACAGTCCGCGCCCACTCGGAATAACCTTCCTACCCGACTTTTTGT
TTCCCCCCCCCCGCCAATTCGATGTTTTAACGTAGTGAGTCTCATGCGCA
TTTTTGTTTCCATTGCCTCACACGCCTTCTCACTTCACCATGGACGGATG
CTTTGTCGCACGTTCTGGGAATATCGAAACACGCGTAGGCCGGCTCGCTG
AGACCAGCCCTCCGCGACTACTATATGGGGTTCTACATCCACACGTGTCC
CAAGATGTCCTACAAAGGCTCGTACGCGCCCTCTTCCCTCTTGTGCCCCG
AGAAACTCTGCTGGGTGCCCCTGGAGCTCTGTCGCCCGGTATTGGACCGT
CGCAAATACGCCCGCCTTTCGGAATTACTCGATCCTCCCCCACAGTCTCT
CTCTTCACCCGCGGATGTCGGTGACGAAGAACCTCGCGGGACTGTTCGCG
GTGACCGAATCAGCGAAGATAGTGTTTTGAAGAACTCGCGATTCGCTTCT
TCTTCTTCCTCGCGTCGCGGCACGAAGGACGACTCGCGGCAGCGCCAAAG
GGGGGTGGCTAGTGACGAGGGGCAGGGAAAAGGCATGTTGTTTTGTCAGC
CTCCGTTGTCAAAACATAGAGCGACGGGCCAAGGACGGCGGACGGGCAAG
CCGGGCATAACAGGCGCGTCGCCGCCAGACGGCGATGACTTCGTGAATGA
GGCGGAGGTAGATCTGGACGAAGCGTCCGGGATTAACACGGTACCATTGC
TGCTGGGACGGCCTCCCTTTCCCGTCAGCATGGCGGTCCTGACACCACAC
GCGAAGGCGATGATAAGGGACGTGTTGAAGACGTACATGGCGACAATGGG
TCCCGACCTCGCCAGGCGGATCATTTTGAAGCTTTACGGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig59550:209..2351+

>mRNA_H-elongata_contig59550.13468.1 ID=mRNA_H-elongata_contig59550.13468.1|Name=mRNA_H-elongata_contig59550.13468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2244bp|location=Sequence derived from alignment at H-elongata_contig59550:209..2351+ (Himanthalia elongata Himel1 dioecious)
CAGGTAAGCGTGCACGGCGATGAACCGTGTGAGGTCACGCGCGTCTCCTT
CCGACGCTTCTTGGTGGACAGCCCTCTCCTCCGCGAATCCTTGGGCGGGG
TGATTGAAGAAGGGCAAGACACCACTCGCCGCGAGTCGGGGAGCAGGTCG
GGTCCGCTGGGCCACGACGGCGTCGTACAAGGGCAGGTAAGCGTGCACGG
CGATGAACCGTGTGAGGTCACGCGCGTCTCCTTCCGACGCTTCTTGGTGG
ACAGCCCTCTCCTCCGCGAATCCTTGGGCGGGGTGATTGAAGAAGGGCAA
GACACCACTCGCCGCGAGTCGGGGAGCAGGTCGGGTCCGCTGGGCCACGA
CGGCGTCGTACAAGGGGGAGTGGGCGCGGAAGAAGGGAGAGCGCGGGAGG
CGAGGTATGGTGACAGCCTGACGGTGCCCTACGGAAGCTACCACCAACTG
TACCGAATCGACAACCGGCTGATCGCCGTAGGGGTTGTGGATATTCTGCC
GAAGTGTCTGGGAGTGGGCGCGGAAGAAGGGAGAGCGCGGGAGGCGAGGT
ATGGTGACAGCCTGACGGTGCCCTACGGAAGCTACCACCAACTGTACCGA
ATCGACAACCGGCTGATCGCCGTAGGGGTTGTGGATATTCTGCCGAAGTG
TCTGTCGTCGGTGTACTGTTTCTACGACCCCGATTACCGGGCGCTGTCGC
TGGGCAAGCTTACCGCGCTCATGGAAACAGAATTTGTCAGAGAGTCGTCG
GTGTACTGTTTCTACGACCCCGATTACCGGGCGCTGTCGCTGGGCAAGCT
TACCGCGCTCATGGAAACAGAATTTGTCAGAGAGGCCGGCTCGCTGAGAC
CAGCCCTCCGCGACTACTATATGGGGTTCTACATCCACACGTGTCCCAAG
ATGTCCTACAAAGGCTCGTACGCGCCCTCTTCCCTCTTGTGCCCCGAGAA
ACTCTGCTGGGTGCCCCTGGAGCTCTGTCGCCCGGTATTGGACCGTCGCA
AATACGCCCGCCTTTCGGAATTACTCGATCCTCCCCCACAGTCTCTCTCT
TCACCCGCGGATGTCGGTGACGAAGAACCTCGCGGGACTGTTCGCGGTGA
CCGAATCAGCGAAGATAGTGTTTTGAAGAACTCGCGATTCGCTTCTTCTT
CTTCCTCGCGTCGCGGCACGAAGGACGACTCGCGGCAGCGCCAAAGGGGG
GTGGCTAGTGACGAGGGGCAGGGAAAAGGCATGTTGTTTTGTCAGCCTCC
GTTGTCAAAACATAGAGCGACGGGCCAAGGACGGCGGACGGGCAAGCCGG
GCATAACAGGCGCGTCGCCGCCAGACGGCGATGACTTCGTGAATGAGGCG
GAGGTAGATCTGGACGAAGCGTCCGGGATTAACACGGTACCATTGCTGCT
GGGACGGCCTCCCTTTCCCGTCAGCATGGCGGTCCTGACACCACACGCGA
AGGCGATGATAAGGGACGTGTTGAAGACGTACATGGCGACAATGGGTCCC
GACCTCGCCAGGCGGATCATTTTGAAGCTTTACGGCTAGGCCGGCTCGCT
GAGACCAGCCCTCCGCGACTACTATATGGGGTTCTACATCCACACGTGTC
CCAAGATGTCCTACAAAGGCTCGTACGCGCCCTCTTCCCTCTTGTGCCCC
GAGAAACTCTGCTGGGTGCCCCTGGAGCTCTGTCGCCCGGTATTGGACCG
TCGCAAATACGCCCGCCTTTCGGAATTACTCGATCCTCCCCCACAGTCTC
TCTCTTCACCCGCGGATGTCGGTGACGAAGAACCTCGCGGGACTGTTCGC
GGTGACCGAATCAGCGAAGATAGTGTTTTGAAGAACTCGCGATTCGCTTC
TTCTTCTTCCTCGCGTCGCGGCACGAAGGACGACTCGCGGCAGCGCCAAA
GGGGGGTGGCTAGTGACGAGGGGCAGGGAAAAGGCATGTTGTTTTGTCAG
CCTCCGTTGTCAAAACATAGAGCGACGGGCCAAGGACGGCGGACGGGCAA
GCCGGGCATAACAGGCGCGTCGCCGCCAGACGGCGATGACTTCGTGAATG
AGGCGGAGGTAGATCTGGACGAAGCGTCCGGGATTAACACGGTACCATTG
CTGCTGGGACGGCCTCCCTTTCCCGTCAGCATGGCGGTCCTGACACCACA
CGCGAAGGCGATGATAAGGGACGTGTTGAAGACGTACATGGCGACAATGG
GTCCCGACCTCGCCAGGCGGATCATTTTGAAGCTTTACGGCTAG
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