mRNA_H-elongata_contig5955.13467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5955.13467.1
Unique NamemRNA_H-elongata_contig5955.13467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5955.13467.1 vs. uniprot
Match: D7FX62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX62_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.330e-34
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 LAQAAFKFYDKLKNYDEFDYGYTLKMFPDDPVTPIEKRAPNTNPVSRFFEGLLSPVNTAGMKGPPVDPPP 210
            L +AAF+ YDKL  YDEF+YGYTLKMFPDDPVTPIEKRAP+TNPV +FFEGLLSPVNTAGMKGP ++PPP
Sbjct:  126 LKKAAFRVYDKLAAYDEFEYGYTLKMFPDDPVTPIEKRAPSTNPVGKFFEGLLSPVNTAGMKGPEINPPP 195
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BLAST of mRNA_H-elongata_contig5955.13467.1 vs. uniprot
Match: A0A7S1Y6R6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6R6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.320e-6
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 LAQAAFKFYDKLKNYD-EFDYGYTLKMFPDDPVTPIEK---RAPNTNPVSRFFEGLLSPVNTAGMKGPPVD 201
            L +A  + Y KL+ ++ EF++G+ LK++PDDP+    K   RAP  +    +   LLSPV+ +G+K PPV+
Sbjct:  116 LKKAIVRTYPKLEGFEQEFEFGFNLKVYPDDPIETATKGGARAPGLS-FGNWISTLLSPVDNSGVKPPPVE 185
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BLAST of mRNA_H-elongata_contig5955.13467.1 vs. uniprot
Match: A0A6V0XB29_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0XB29_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.690e-6
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 LAQAAFKFYDKLKNYD-EFDYGYTLKMFPDDPVTPIEKRAPNTN--PVSRFFEGLLSPVNTAGMKGPPVD 201
            L  A  + Y KLK  + EF+YGY LK++PDDPV    K   N++   V  +   LLSPV+ +G+  P V+
Sbjct:  117 LRSAIVRAYPKLKGSEMEFEYGYNLKIYPDDPVQVASKSMGNSSGPSVGNWISNLLSPVDASGVAQPVVE 186
[Close]
BLAST of mRNA_H-elongata_contig5955.13467.1 vs. uniprot
Match: A0A7S2YFB7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFB7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.320e-5
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    1 LAQAAFKFYDKLKNYD-EFDYGYTLKMFPDDPVTPIEKRAPNTN--PVSRFFEGLLSPVNTAGMKGPPV 198
            +A    + Y KLK Y+ EF+YGY LK++PDDP+    K +  +    V  +   LLSPV+ + +  PP 
Sbjct:  113 MASGIVRTYPKLKGYEQEFEYGYNLKIYPDDPIEVASKTSSLSTGFSVGNWISTLLSPVDASNVPPPPT 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5955.13467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX62_ECTSI1.330e-3481.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1Y6R6_9STRA1.320e-639.44Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6V0XB29_9STRA2.690e-641.43Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2YFB7_9STRA1.320e-537.68Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5955contigH-elongata_contig5955:10316..11077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D7FX62
EggNOG OGs2E28I@1,2S9GR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_004420.1
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.5238528-CDS-H-elongata_contig5955:10315..104561622930964.5238528-CDS-H-elongata_contig5955:10315..10456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5955 10316..10456 -
1691679642.918612-CDS-H-elongata_contig5955:10315..104561691679642.918612-CDS-H-elongata_contig5955:10315..10456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5955 10316..10456 -
1622930964.5438933-CDS-H-elongata_contig5955:11002..110771622930964.5438933-CDS-H-elongata_contig5955:11002..11077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5955 11003..11077 -
1691679642.9331286-CDS-H-elongata_contig5955:11002..110771691679642.9331286-CDS-H-elongata_contig5955:11002..11077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5955 11003..11077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5955.13467.1prot_H-elongata_contig5955.13467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5955 10316..11077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5955.13467.1

>prot_H-elongata_contig5955.13467.1 ID=prot_H-elongata_contig5955.13467.1|Name=mRNA_H-elongata_contig5955.13467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
LAQAAFKFYDKLKNYDEFDYGYTLKMFPDDPVTPIEKRAPNTNPVSRFFE
GLLSPVNTAGMKGPPVDPPPS*
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mRNA from alignment at H-elongata_contig5955:10316..11077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5955.13467.1 ID=mRNA_H-elongata_contig5955.13467.1|Name=mRNA_H-elongata_contig5955.13467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at H-elongata_contig5955:10316..11077- (Himanthalia elongata Himel1 dioecious)
CTTGCACAGGCGGCGTTCAAGTTCTACGACAAGCTAAAAAATTACGACGA
GTTTGATTACGGGTACACGCTCAAGGTGAGTGAATGAAGTATGAAGTACA
GCATCGGCAGTGCGTCATCTGGTTTTTGCTCCGGGCATTACTGCTACACT
CTACACCCATTTCGGGCGGCGCTGATTGATACCGGCTTCGCCGCCACGAT
GTAGGGGACGAGCGGATCACTACTTCTTTGACAATCGTAATCTCAGGCCC
GTTTCTATTTGGGGACGGGGGACGGGGGTGACGGCCTCAAATCATATCGG
GATAGACTTTCGTTTTCTAGGCGATTTCTGGGCCCCGCCGGTTTGAAGGG
CAAAACCGACTAAACGGTTCAACCGTAGCCTTGATCAAGTGCGATTATGT
AGGTCCTTCCCGCGCACCTTGCCACCTCCGCCAATCCAAACACAACCCTT
CCATCCGCCCATTCTCCCACCCACCCTCCATGTGTCGTCGTCGCGTGCGT
ATCTCTTCTCGCTTCTCGGCCGTAATATTTTGTAATATTTTGTAATATTT
TGTCATTTTTTGTTTTGTAAATGGGTTTTGCTTTGCTTTTGCTTTGTGTG
TGTAAATGTGTCGGGGGAAAGATGTTTCCCGACGATCCGGTAACGCCGAT
CGAGAAGCGCGCCCCTAACACGAATCCGGTTAGCCGATTCTTTGAAGGAC
TCTTGAGTCCCGTCAACACGGCGGGCATGAAGGGACCACCCGTCGACCCG
CCCCCGTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig5955:10316..11077-

>mRNA_H-elongata_contig5955.13467.1 ID=mRNA_H-elongata_contig5955.13467.1|Name=mRNA_H-elongata_contig5955.13467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig5955:10316..11077- (Himanthalia elongata Himel1 dioecious)
CTTGCACAGGCGGCGTTCAAGTTCTACGACAAGCTAAAAAATTACGACGA
GTTTGATTACGGGTACACGCTCAAGCTTGCACAGGCGGCGTTCAAGTTCT
ACGACAAGCTAAAAAATTACGACGAGTTTGATTACGGGTACACGCTCAAG
ATGTTTCCCGACGATCCGGTAACGCCGATCGAGAAGCGCGCCCCTAACAC
GAATCCGGTTAGCCGATTCTTTGAAGGACTCTTGAGTCCCGTCAACACGG
CGGGCATGAAGGGACCACCCGTCGACCCGCCCCCGTCGTGAATGTTTCCC
GACGATCCGGTAACGCCGATCGAGAAGCGCGCCCCTAACACGAATCCGGT
TAGCCGATTCTTTGAAGGACTCTTGAGTCCCGTCAACACGGCGGGCATGA
AGGGACCACCCGTCGACCCGCCCCCGTCGTGA
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