mRNA_H-elongata_contig59493.13464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59493.13464.1
Unique NamemRNA_H-elongata_contig59493.13464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59493.13464.1 vs. uniprot
Match: D7FZF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 4.580e-37
Identity = 73/118 (61.86%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:  292 RSVPCRLSEDGTGLSSAVRYPGLSLDRRLSLWESGWRPSALRELPRGGDGFFSGWTHLGQPERFELVKSANRSSGSRGAALTDAELEWTVLSLEEAEDRMSSLDFSEAASVLENVLIR 645
            RS P   S++ +G  SA      +   RL+ W +GWRP ALR LPRGG+GFFSGWTHLGQ ERFELVKSANRS G  G  L+DAELEW VL LEEAE+RMS++ FS AA +LE VL R
Sbjct:   29 RSQPQAQSDNSSG--SAAGRTRTASSSRLARWGAGWRPPALRPLPRGGEGFFSGWTHLGQSERFELVKSANRSVGPDGEPLSDAELEWAVLCLEEAEERMSAMYFSTAAGILEGVLGR 144
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BLAST of mRNA_H-elongata_contig59493.13464.1 vs. uniprot
Match: A0A6H5KA32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA32_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 8.430e-36
Identity = 78/143 (54.55%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:  217 TSEGRNHVPGSAVAAREARNGKTQDRSVPCRLSEDGTGLSSAVRYPGLSLDRRLSLWESGWRPSALRELPRGGDGFFSGWTHLGQPERFELVKSANRSSGSRGAALTDAELEWTVLSLEEAEDRMSSLDFSEAASVLENVLIR 645
            T+ G +  PG A  AR+ R+ +               G SS+      +L+ RL  W +GWRP  LR LPRGG+GFFSGWTHLGQPERFELVKSANRS G  G  L+D ELEW VL LEEAE+RMS++DFS AA +LE VL R
Sbjct:  221 TTAGASARPGDAAGARDRRHPR---------------GGSSST-----TLEDRLGRWGAGWRPPPLRPLPRGGEGFFSGWTHLGQPERFELVKSANRSVGPDGEPLSDPELEWAVLCLEEAEERMSAMDFSTAAGILEGVLGR 343
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BLAST of mRNA_H-elongata_contig59493.13464.1 vs. uniprot
Match: A0A7S2GJR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJR6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.790e-5
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1 
Query:  262 REARNGKTQDRSVPCRLSED---GTGLSSAVRYPGL------------------SLDRRLSLWESGWRPSALRELPRGGDGFFSGWTHLGQPERFELVKSANRSSGSRGAALTDAELEWTVLSLEEAEDRMS 594
            R+A     +DR   CRL E      GL+  +R   L                   LD RL   +S ++P  L  L    D + S W+ +G+ +RFELVKS+ RS    G   T++E+EW V+S E AE+ M+
Sbjct:   26 RDAAEIPARDRGAGCRLCEPMLGDVGLAHRLRQIELLRGVVIREASVGKTPLVPPLDDRLE--DSMFQPPPLLPL-HCADKYSSQWSWVGELDRFELVKSSQRSRNIFGHRQTESEIEWIVMSHELAEELMA 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59493.13464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZF3_ECTSI4.580e-3761.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA32_9PHAE8.430e-3654.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GJR6_9STRA7.790e-533.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59493contigH-elongata_contig59493:2291..3362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003100.1
Exons2
Model size648
Cds size648
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930964.0135546-CDS-H-elongata_contig59493:2290..27961622930964.0135546-CDS-H-elongata_contig59493:2290..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59493 2291..2796 +
1691679642.663535-CDS-H-elongata_contig59493:2290..27961691679642.663535-CDS-H-elongata_contig59493:2290..2796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59493 2291..2796 +
1622930964.0287576-CDS-H-elongata_contig59493:3220..33621622930964.0287576-CDS-H-elongata_contig59493:3220..3362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59493 3221..3362 +
1691679642.673215-CDS-H-elongata_contig59493:3220..33621691679642.673215-CDS-H-elongata_contig59493:3220..3362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59493 3221..3362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59493.13464.1prot_H-elongata_contig59493.13464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59493 2291..3362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59493.13464.1

>prot_H-elongata_contig59493.13464.1 ID=prot_H-elongata_contig59493.13464.1|Name=mRNA_H-elongata_contig59493.13464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
AGQTCTVHSARPLRSPIDGSLALWSEGRRERLDELEAEIQQDDAQRVEEG
NQPQDARGAHHSHPPCPCTEDTTSEGRNHVPGSAVAAREARNGKTQDRSV
PCRLSEDGTGLSSAVRYPGLSLDRRLSLWESGWRPSALRELPRGGDGFFS
GWTHLGQPERFELVKSANRSSGSRGAALTDAELEWTVLSLEEAEDRMSSL
DFSEAASVLENVLIR*
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mRNA from alignment at H-elongata_contig59493:2291..3362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59493.13464.1 ID=mRNA_H-elongata_contig59493.13464.1|Name=mRNA_H-elongata_contig59493.13464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-elongata_contig59493:2291..3362+ (Himanthalia elongata Himel1 dioecious)
GCTGGTCAAACGTGTACTGTTCATTCGGCAAGGCCACTGAGGTCTCCCAT
CGACGGCTCTTTGGCCCTCTGGAGCGAAGGGAGAAGAGAGCGCCTCGACG
AGCTCGAAGCTGAAATCCAACAGGACGACGCCCAACGAGTCGAGGAGGGA
AACCAACCGCAGGATGCGCGTGGGGCACACCATTCTCATCCGCCATGTCC
CTGCACTGAAGACACGACCAGCGAGGGGCGAAATCACGTTCCAGGATCGG
CAGTAGCCGCAAGAGAGGCGAGAAACGGCAAGACTCAAGATCGAAGCGTT
CCATGTCGCCTCTCAGAAGACGGAACTGGCTTGTCTAGCGCCGTGCGTTA
TCCCGGGCTTTCACTCGACCGCAGGTTGAGCCTGTGGGAAAGTGGTTGGC
GCCCATCAGCGCTGAGGGAACTTCCTCGGGGAGGAGATGGATTTTTCTCA
GGTTGGACGCACCTCGGCCAGCCGGAGCGCTTTGAGCTGGTGAAGAGTGC
GAACAGGTTTGTGTGCTCGCCAGACCGCGCGCGCGCGGATGTTTCTCGAG
GCGAGACGTCTCGGTTCGTTATCTTAGGGTATCCGCCACTCTTATGGACA
TCTATCGCTGTCGACATGACGGACGGTCAGCGTCAGGTAGAGGTTGGGAA
CGAAAGGGTTACGGAAGGCAGCTAGCTCTGCGTCTCTTACTGAAAATGCA
CATGCCCGTTGCGTTTTGAGACAAACTCAGGCAGTGTACTCTTACGTTGG
GAGTCAAACACCGTTTGCTGGAACCGACAAGCACTTTTTGTGCACGTGAC
ATGACCATTGCCCAGCATCCGAGTTAGCGAACACACCCTTCAGGAGGTTT
GCTACACACTATCTTTCTCCCAAGATTGCTACAAAGAGGTACAGGCGTCA
GTAGTCTCGCGTCCTTTTTTTCGGCAACAGGTCTTCGGGATCTCGAGGTG
CCGCGCTGACGGACGCGGAGCTCGAGTGGACGGTGCTGTCCCTTGAAGAG
GCCGAGGACCGTATGTCCTCGCTAGATTTTTCGGAGGCTGCTAGTGTTCT
AGAGAACGTGCTGATTAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig59493:2291..3362+

>mRNA_H-elongata_contig59493.13464.1 ID=mRNA_H-elongata_contig59493.13464.1|Name=mRNA_H-elongata_contig59493.13464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig59493:2291..3362+ (Himanthalia elongata Himel1 dioecious)
GCTGGTCAAACGTGTACTGTTCATTCGGCAAGGCCACTGAGGTCTCCCAT
CGACGGCTCTTTGGCCCTCTGGAGCGAAGGGAGAAGAGAGCGCCTCGACG
AGCTCGAAGCTGAAATCCAACAGGACGACGCCCAACGAGTCGAGGAGGGA
AACCAACCGCAGGATGCGCGTGGGGCACACCATTCTCATCCGCCATGTCC
CTGCACTGAAGACACGACCAGCGAGGGGCGAAATCACGTTCCAGGATCGG
CAGTAGCCGCAAGAGAGGCGAGAAACGGCAAGACTCAAGATCGAAGCGTT
CCATGTCGCCTCTCAGAAGACGGAACTGGCTTGTCTAGCGCCGTGCGTTA
TCCCGGGCTTTCACTCGACCGCAGGTTGAGCCTGTGGGAAAGTGGTTGGC
GCCCATCAGCGCTGAGGGAACTTCCTCGGGGAGGAGATGGATTTTTCTCA
GGTTGGACGCACCTCGGCCAGCCGGAGCGCTTTGAGCTGGTGAAGAGTGC
GAACAGGCTGGTCAAACGTGTACTGTTCATTCGGCAAGGCCACTGAGGTC
TCCCATCGACGGCTCTTTGGCCCTCTGGAGCGAAGGGAGAAGAGAGCGCC
TCGACGAGCTCGAAGCTGAAATCCAACAGGACGACGCCCAACGAGTCGAG
GAGGGAAACCAACCGCAGGATGCGCGTGGGGCACACCATTCTCATCCGCC
ATGTCCCTGCACTGAAGACACGACCAGCGAGGGGCGAAATCACGTTCCAG
GATCGGCAGTAGCCGCAAGAGAGGCGAGAAACGGCAAGACTCAAGATCGA
AGCGTTCCATGTCGCCTCTCAGAAGACGGAACTGGCTTGTCTAGCGCCGT
GCGTTATCCCGGGCTTTCACTCGACCGCAGGTTGAGCCTGTGGGAAAGTG
GTTGGCGCCCATCAGCGCTGAGGGAACTTCCTCGGGGAGGAGATGGATTT
TTCTCAGGTTGGACGCACCTCGGCCAGCCGGAGCGCTTTGAGCTGGTGAA
GAGTGCGAACAGGTCTTCGGGATCTCGAGGTGCCGCGCTGACGGACGCGG
AGCTCGAGTGGACGGTGCTGTCCCTTGAAGAGGCCGAGGACCGTATGTCC
TCGCTAGATTTTTCGGAGGCTGCTAGTGTTCTAGAGAACGTGCTGATTAG
GTAAGTCTTCGGGATCTCGAGGTGCCGCGCTGACGGACGCGGAGCTCGAG
TGGACGGTGCTGTCCCTTGAAGAGGCCGAGGACCGTATGTCCTCGCTAGA
TTTTTCGGAGGCTGCTAGTGTTCTAGAGAACGTGCTGATTAGGTAA
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