mRNA_H-elongata_contig59435.13458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59435.13458.1
Unique NamemRNA_H-elongata_contig59435.13458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig59435.13458.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.780e-63
Identity = 123/232 (53.02%), Postives = 148/232 (63.79%), Query Frame = 3 
Query:  180 ASEDAPNIEEEVRDFSRRFARLVISRAFREGGAS-----------------------------------------ADSGLRAGGFANTHVDVTPRGASALALSTFEAELSLRGSQRLGTQIQDDGDMLRSRVLPSLRENARQLHALYIAIDRMAKEVMPEMEDSVKRMEKAVYDLEEMRKEQVDTRGPRGSYGLGLALGAGLWAARPVESDVHIPEVFDTDKVFRVDDGGLA 752
            A +    IEEEVRDF+ RFARLV+SR+FREG                                             DSG   GG ++    + P   SAL     EAELSLRGSQRLG Q++ D  MLRS+V P+L ENAR+LHALY+AIDR+ +EVMPE++ +VKRMEKAVYDLEEMRKEQVDTR P+GS+GLGLALGAGLW  +  E  V +PEVFDTDK+FRV++GGLA
Sbjct:   12 ADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSS----LRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLA 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59435.13458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM6_ECTSI1.780e-6353.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59435contigH-elongata_contig59435:2262..3331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002480.1
Exons1
Model size1070
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59435.13458.1prot_H-elongata_contig59435.13458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59435 2429..3025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.5055242-UTR-H-elongata_contig59435:2261..24281622930963.5055242-UTR-H-elongata_contig59435:2261..2428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59435 2262..2428 +
1691679642.5015836-UTR-H-elongata_contig59435:2261..24281691679642.5015836-UTR-H-elongata_contig59435:2261..2428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59435 2262..2428 +
1622930963.5353277-UTR-H-elongata_contig59435:3025..33311622930963.5353277-UTR-H-elongata_contig59435:3025..3331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59435 3026..3331 +
1691679642.5183787-UTR-H-elongata_contig59435:3025..33311691679642.5183787-UTR-H-elongata_contig59435:3025..3331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59435 3026..3331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.520585-CDS-H-elongata_contig59435:2428..30251622930963.520585-CDS-H-elongata_contig59435:2428..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59435 2429..3025 +
1691679642.5101328-CDS-H-elongata_contig59435:2428..30251691679642.5101328-CDS-H-elongata_contig59435:2428..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59435 2429..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59435.13458.1

>prot_H-elongata_contig59435.13458.1 ID=prot_H-elongata_contig59435.13458.1|Name=mRNA_H-elongata_contig59435.13458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp
MSEAASEDAPNIEEEVRDFSRRFARLVISRAFREGGASADSGLRAGGFAN
THVDVTPRGASALALSTFEAELSLRGSQRLGTQIQDDGDMLRSRVLPSLR
ENARQLHALYIAIDRMAKEVMPEMEDSVKRMEKAVYDLEEMRKEQVDTRG
PRGSYGLGLALGAGLWAARPVESDVHIPEVFDTDKVFRVDDGGLATPL*
back to top

mRNA from alignment at H-elongata_contig59435:2262..3331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59435.13458.1 ID=mRNA_H-elongata_contig59435.13458.1|Name=mRNA_H-elongata_contig59435.13458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1070bp|location=Sequence derived from alignment at H-elongata_contig59435:2262..3331+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCCGCCCCTGTCGTGCTGACACTGGTACAGCCTATCGCGACACCA
CGATAATCGATTGTGGCCACGAATGCATCTTGAGCTACGGCGTTACCCTT
GACGACGACGAGAGCGCTTTCGAGCCTTCAGTTTTGGGATATCCCGCAGT
CGATTCTACACGCTAGAATGTCTGAAGCAGCATCCGAAGACGCTCCCAAC
ATCGAAGAGGAAGTCCGCGACTTCTCGAGGCGATTTGCTCGCCTTGTTAT
CAGTCGAGCTTTCCGGGAGGGTGGGGCATCAGCGGATTCAGGTCTTCGGG
CAGGAGGCTTCGCCAATACCCATGTTGATGTGACACCCCGGGGAGCATCC
GCGTTGGCGTTATCGACGTTCGAGGCGGAGCTCAGTCTGCGCGGATCGCA
ACGACTTGGAACACAAATCCAAGACGACGGTGACATGTTGCGCTCTCGAG
TGCTCCCGAGCTTGCGGGAGAACGCCAGGCAGCTGCATGCGCTGTACATC
GCCATTGACAGGATGGCTAAAGAAGTCATGCCCGAAATGGAGGATTCTGT
CAAGCGAATGGAGAAGGCTGTGTACGACTTGGAGGAGATGAGGAAAGAGC
AAGTGGACACACGAGGCCCTCGAGGGTCGTACGGTTTGGGGTTGGCATTA
GGCGCTGGGTTGTGGGCAGCTCGTCCAGTAGAAAGCGATGTGCACATTCC
TGAGGTTTTCGACACCGACAAGGTATTTCGAGTGGATGACGGTGGGCTAG
CTACCCCTCTGTGATGAAACTGTTCTACTTCCGTTCAGTTTATTTCATGT
TGGCAATGTGCGTCCCTTGTGTTTTTTTGTCGAGGTCATCTCTACTGATC
TTCTTTCTCCTCGCCTAAATCTCAAGTCAAGTTCATTACTGTACCGCTTT
GGTGGACGATGTATCGATACCTGGTCTCTGTATTTAGCTCTCCTTAGAGG
TGTACTTTGTGTGTATAAAATATTTTTGAGCACCATAGCCGGAGCATACT
ACTATTTTCAAAAATTATCCCCCTCCAAGAGGGTCATTCATATGAATATA
CATTAAAAACAGAAGCGCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59435:2262..3331+

>mRNA_H-elongata_contig59435.13458.1 ID=mRNA_H-elongata_contig59435.13458.1|Name=mRNA_H-elongata_contig59435.13458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig59435:2262..3331+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGAAGCAGCATCCGAAGACGCTCCCAACATCGAAGAGGAAGTCCG
CGACTTCTCGAGGCGATTTGCTCGCCTTGTTATCAGTCGAGCTTTCCGGG
AGGGTGGGGCATCAGCGGATTCAGGTCTTCGGGCAGGAGGCTTCGCCAAT
ACCCATGTTGATGTGACACCCCGGGGAGCATCCGCGTTGGCGTTATCGAC
GTTCGAGGCGGAGCTCAGTCTGCGCGGATCGCAACGACTTGGAACACAAA
TCCAAGACGACGGTGACATGTTGCGCTCTCGAGTGCTCCCGAGCTTGCGG
GAGAACGCCAGGCAGCTGCATGCGCTGTACATCGCCATTGACAGGATGGC
TAAAGAAGTCATGCCCGAAATGGAGGATTCTGTCAAGCGAATGGAGAAGG
CTGTGTACGACTTGGAGGAGATGAGGAAAGAGCAAGTGGACACACGAGGC
CCTCGAGGGTCGTACGGTTTGGGGTTGGCATTAGGCGCTGGGTTGTGGGC
AGCTCGTCCAGTAGAAAGCGATGTGCACATTCCTGAGGTTTTCGACACCG
ACAAGGTATTTCGAGTGGATGACGGTGGGCTAGCTACCCCTCTGTGAATG
TCTGAAGCAGCATCCGAAGACGCTCCCAACATCGAAGAGGAAGTCCGCGA
CTTCTCGAGGCGATTTGCTCGCCTTGTTATCAGTCGAGCTTTCCGGGAGG
GTGGGGCATCAGCGGATTCAGGTCTTCGGGCAGGAGGCTTCGCCAATACC
CATGTTGATGTGACACCCCGGGGAGCATCCGCGTTGGCGTTATCGACGTT
CGAGGCGGAGCTCAGTCTGCGCGGATCGCAACGACTTGGAACACAAATCC
AAGACGACGGTGACATGTTGCGCTCTCGAGTGCTCCCGAGCTTGCGGGAG
AACGCCAGGCAGCTGCATGCGCTGTACATCGCCATTGACAGGATGGCTAA
AGAAGTCATGCCCGAAATGGAGGATTCTGTCAAGCGAATGGAGAAGGCTG
TGTACGACTTGGAGGAGATGAGGAAAGAGCAAGTGGACACACGAGGCCCT
CGAGGGTCGTACGGTTTGGGGTTGGCATTAGGCGCTGGGTTGTGGGCAGC
TCGTCCAGTAGAAAGCGATGTGCACATTCCTGAGGTTTTCGACACCGACA
AGGTATTTCGAGTGGATGACGGTGGGCTAGCTACCCCTCTGTGA
back to top