mRNA_H-elongata_contig59416.13454.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A6H5L1A3_9PHAE (CTP synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A3_9PHAE) HSP 1 Score: 115 bits (289), Expect = 5.340e-29 Identity = 56/83 (67.47%), Postives = 72/83 (86.75%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSS---MSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
SVLTV+DVTNIY +P +LV+Q+LH++F++QLGF+ +SPP+M+ W RLA+ VD++ TPVRIAIVGKYTGLQDSYLSVIK L
Sbjct: 266 SVLTVYDVTNIYKVPLVLVEQDLHNIFRRQLGFARTRFVSPPDMAKWDRLASCVDEVTTPVRIAIVGKYTGLQDSYLSVIKAL 348
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A835Z0Y6_9STRA (CTP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y6_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.480e-21 Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 4 VLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
VLTVHDV+NIY++P LV+QNLH++ K+QL + P+M WT LA VD P+ IA+VGKYTGLQDSYLSVIK L
Sbjct: 241 VLTVHDVSNIYHVPLKLVEQNLHNMLKEQLKLP-IHEPDMKEWTMLAQKVDTSTMPISIAVVGKYTGLQDSYLSVIKSL 318
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A2I0KZN6_PUNGR (CTP_synth_N domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KZN6_PUNGR) HSP 1 Score: 88.2 bits (217), Expect = 1.700e-20 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGF-SSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
++L +HDV NI+++P +L QN HH KQL S ++PP++ WT++A D L T VRIA+VGKY GL DSYLSV+K L
Sbjct: 20 NILNIHDVPNIWHVPLLLRNQNGHHSILKQLNLLSKIAPPDLRDWTKMAETFDNLTTSVRIAMVGKYVGLTDSYLSVVKAL 100
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A0D2SC50_GOSRA (CTP synthase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2SC50_GOSRA) HSP 1 Score: 88.6 bits (218), Expect = 7.890e-19 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
++L +HDV NI++IP +L QN HH KQL S++ PP++ WTR+A D L VRIA+VGKY GL DSYLSV+K L
Sbjct: 240 NILNIHDVPNIWHIPLLLRNQNAHHSILKQLDLLSIATPPDLEAWTRMAETFDNLTDSVRIAMVGKYVGLTDSYLSVVKAL 320
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A8J9S9G7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9G7_PHATR) HSP 1 Score: 87.4 bits (215), Expect = 8.980e-19 Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
+VL+VHDV N+Y++P +L +QNLH + K+L P++ WT +A +++ V IA++GKYTGLQDSYLSVIKGL
Sbjct: 238 NVLSVHDVNNVYFVPGLLQEQNLHEILGKELCLDKPLNPDLGSWTTMAHSIELASHTVTIALIGKYTGLQDSYLSVIKGL 317
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A1U8K084_GOSHI (CTP synthase n=22 Tax=Malvaceae TaxID=3629 RepID=A0A1U8K084_GOSHI) HSP 1 Score: 88.6 bits (218), Expect = 9.640e-19 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
++L +HDV NI++IP +L QN HH KQL S++ PP++ WTR+A D L VRIA+VGKY GL DSYLSV+K L
Sbjct: 240 NILNIHDVPNIWHIPLLLRNQNAHHSILKQLDLLSIATPPDLEAWTRMAETFDNLTDSVRIAMVGKYVGLTDSYLSVVKAL 320
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A6P8BUV3_PUNGR (CTP synthase n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8BUV3_PUNGR) HSP 1 Score: 88.2 bits (217), Expect = 1.320e-18 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGF-SSMSPPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
++L +HDV NI+++P +L QN HH KQL S ++PP++ WT++A D L T VRIA+VGKY GL DSYLSV+K L
Sbjct: 240 NILNIHDVPNIWHVPLLLRNQNGHHSILKQLNLLSKIAPPDLRDWTKMAETFDNLTTSVRIAMVGKYVGLTDSYLSVVKAL 320
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: V4TD03_CITCL (CTP_synth_N domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=V4TD03_CITCL) HSP 1 Score: 87.4 bits (215), Expect = 1.510e-18 Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
++L +HDV NI+++P +L QN HH KQL S++ PPN+ WT+ A D L VRIA+VGKY GL DSYLSV+K L
Sbjct: 240 NILNIHDVPNIWHVPLLLRNQNAHHSILKQLNLLSIAAPPNLQAWTKRAETYDNLKNSVRIAMVGKYVGLADSYLSVVKAL 320
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: A0A0D2MU35_GOSRA (CTP synthase n=2 Tax=Malvoideae TaxID=214907 RepID=A0A0D2MU35_GOSRA) HSP 1 Score: 87.4 bits (215), Expect = 1.630e-18 Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 1 SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMS-PPNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
++L +HDV NI++IP +L QN HH KQL S++ PP++ WTR A D L VRIA+VGKY GL DSYLSV+K L
Sbjct: 77 NILNIHDVPNIWHIPLLLRNQNAHHSILKQLNLLSIATPPDLEAWTRRAETFDNLTDSVRIAMVGKYVGLTDSYLSVVKAL 157
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Match: W7TKH0_9STRA (CTP synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.410e-18 Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 4 VLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSS-MSP-PNMSMWTRLATAVDQLVTPVRIAIVGKYTGLQDSYLSVIKGL 240
VL+VHDV+NIY++P IL +QNLH + + L M+P P++ WT LAT+VD V+IAIVGKYTGL DSYLSV+K L
Sbjct: 192 VLSVHDVSNIYHVPIILAEQNLHGILRDHLKLERIMTPEPDLVRWTELATSVDIFEEQVKIAIVGKYTGLSDSYLSVLKAL 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59416.13454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59416.13454.1 >prot_H-elongata_contig59416.13454.1 ID=prot_H-elongata_contig59416.13454.1|Name=mRNA_H-elongata_contig59416.13454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp SVLTVHDVTNIYYIPTILVQQNLHHLFKKQLGFSSMSPPNMSMWTRLATAback to top mRNA from alignment at H-elongata_contig59416:2970..3511+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59416.13454.1 ID=mRNA_H-elongata_contig59416.13454.1|Name=mRNA_H-elongata_contig59416.13454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at H-elongata_contig59416:2970..3511+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59416:2970..3511+ >mRNA_H-elongata_contig59416.13454.1 ID=mRNA_H-elongata_contig59416.13454.1|Name=mRNA_H-elongata_contig59416.13454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig59416:2970..3511+ (Himanthalia elongata Himel1 dioecious)back to top |