mRNA_H-elongata_contig59401.13452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59401.13452.1
Unique NamemRNA_H-elongata_contig59401.13452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59401.13452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59401contigH-elongata_contig59401:674..1411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size739
Cds size606
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.0144315-UTR-H-elongata_contig59401:673..8051622930963.0144315-UTR-H-elongata_contig59401:673..805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59401 674..805 +
1691679642.2543123-UTR-H-elongata_contig59401:673..8051691679642.2543123-UTR-H-elongata_contig59401:673..805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59401 674..805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.0397685-CDS-H-elongata_contig59401:805..14111622930963.0397685-CDS-H-elongata_contig59401:805..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59401 806..1411 +
1691679642.2779088-CDS-H-elongata_contig59401:805..14111691679642.2779088-CDS-H-elongata_contig59401:805..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59401 806..1411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59401.13452.1prot_H-elongata_contig59401.13452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59401 806..1411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59401.13452.1

>prot_H-elongata_contig59401.13452.1 ID=prot_H-elongata_contig59401.13452.1|Name=mRNA_H-elongata_contig59401.13452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MKICVGDGCSNYASYGLAGSEKREYCVDHALDIASKRCMFKGCSKRSSYG
VADSRYAKYCAEHALQGMVNFEKNMCVGHGCSKSPSYGFTGSGKRKYCPE
HALDGMVNVSSKICMFKGCSKRSSYGVAGSGKRGYCAEHALDGMVNVSFK
SCMFKGCSKRPSYGFAGSKNAKYCSDHALNEMVNIASKMCIFQGCSKIPS
YG
back to top

mRNA from alignment at H-elongata_contig59401:674..1411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59401.13452.1 ID=mRNA_H-elongata_contig59401.13452.1|Name=mRNA_H-elongata_contig59401.13452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=738bp|location=Sequence derived from alignment at H-elongata_contig59401:674..1411+ (Himanthalia elongata Himel1 dioecious)
AGGTTCGCCGAAGCTCTTTCCAAGATAGTTAAGGGCGGTGATTTTGCTAA
TCTACCTTTTCTACGAAATCGGTAGTAACGTTAAGAGGGAGTCCTTATCG
AGAAACTCTACGAAGGAATTATCAAAACCGCGATGAAGATATGTGTTGGC
GATGGATGCTCTAATTACGCAAGCTACGGGTTGGCCGGCAGCGAAAAGCG
AGAGTACTGTGTCGACCATGCGTTAGACATTGCTTCCAAGAGGTGTATGT
TTAAAGGATGCTCTAAGCGATCGAGCTATGGGGTTGCCGACAGCAGATAT
GCGAAGTACTGCGCCGAGCATGCCTTGCAGGGGATGGTTAACTTTGAAAA
GAATATGTGTGTTGGACATGGATGCTCTAAGAGTCCGAGCTATGGCTTCA
CCGGCAGCGGAAAGCGGAAGTACTGTCCCGAGCATGCCTTGGACGGGATG
GTCAACGTTTCTTCCAAGATTTGTATGTTCAAAGGATGCTCTAAGCGATC
GAGCTATGGAGTTGCCGGCAGCGGAAAACGGGGGTACTGCGCCGAGCATG
CCTTGGACGGGATGGTAAATGTTTCTTTCAAGAGCTGCATGTTCAAAGGA
TGCTCTAAGCGACCGAGCTATGGATTTGCCGGCAGCAAAAATGCGAAGTA
CTGTTCCGATCATGCCTTGAACGAGATGGTCAACATTGCTTCCAAAATGT
GTATATTTCAAGGATGCTCTAAGATACCGAGCTATGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59401:674..1411+

>mRNA_H-elongata_contig59401.13452.1 ID=mRNA_H-elongata_contig59401.13452.1|Name=mRNA_H-elongata_contig59401.13452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig59401:674..1411+ (Himanthalia elongata Himel1 dioecious)
ATGAAGATATGTGTTGGCGATGGATGCTCTAATTACGCAAGCTACGGGTT
GGCCGGCAGCGAAAAGCGAGAGTACTGTGTCGACCATGCGTTAGACATTG
CTTCCAAGAGGTGTATGTTTAAAGGATGCTCTAAGCGATCGAGCTATGGG
GTTGCCGACAGCAGATATGCGAAGTACTGCGCCGAGCATGCCTTGCAGGG
GATGGTTAACTTTGAAAAGAATATGTGTGTTGGACATGGATGCTCTAAGA
GTCCGAGCTATGGCTTCACCGGCAGCGGAAAGCGGAAGTACTGTCCCGAG
CATGCCTTGGACGGGATGGTCAACGTTTCTTCCAAGATTTGTATGTTCAA
AGGATGCTCTAAGCGATCGAGCTATGGAGTTGCCGGCAGCGGAAAACGGG
GGTACTGCGCCGAGCATGCCTTGGACGGGATGGTAAATGTTTCTTTCAAG
AGCTGCATGTTCAAAGGATGCTCTAAGCGACCGAGCTATGGATTTGCCGG
CAGCAAAAATGCGAAGTACTGTTCCGATCATGCCTTGAACGAGATGGTCA
ACATTGCTTCCAAAATGTGTATATTTCAAGGATGCTCTAAGATACCGAGC
TATGGGATGAAGATATGTGTTGGCGATGGATGCTCTAATTACGCAAGCTA
CGGGTTGGCCGGCAGCGAAAAGCGAGAGTACTGTGTCGACCATGCGTTAG
ACATTGCTTCCAAGAGGTGTATGTTTAAAGGATGCTCTAAGCGATCGAGC
TATGGGGTTGCCGACAGCAGATATGCGAAGTACTGCGCCGAGCATGCCTT
GCAGGGGATGGTTAACTTTGAAAAGAATATGTGTGTTGGACATGGATGCT
CTAAGAGTCCGAGCTATGGCTTCACCGGCAGCGGAAAGCGGAAGTACTGT
CCCGAGCATGCCTTGGACGGGATGGTCAACGTTTCTTCCAAGATTTGTAT
GTTCAAAGGATGCTCTAAGCGATCGAGCTATGGAGTTGCCGGCAGCGGAA
AACGGGGGTACTGCGCCGAGCATGCCTTGGACGGGATGGTAAATGTTTCT
TTCAAGAGCTGCATGTTCAAAGGATGCTCTAAGCGACCGAGCTATGGATT
TGCCGGCAGCAAAAATGCGAAGTACTGTTCCGATCATGCCTTGAACGAGA
TGGTCAACATTGCTTCCAAAATGTGTATATTTCAAGGATGCTCTAAGATA
CCGAGCTATGGG
back to top