mRNA_H-elongata_contig59299.13441.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: D7FXT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT4_ECTSI) HSP 1 Score: 196 bits (497), Expect = 2.000e-62 Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 1
Query: 13 QSCSLPGGPTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
Q+CSLPGGPTTGWRRDG+CSTDDND GQHCVCSEVT+EFL+YTKAQGNDLSTP P+FPGL GDRWCLCSSRWLQAQR GKAP VVLESTH+KA++V+ L LL E+SS
Sbjct: 32 QACSLPGGPTTGWRRDGYCSTDDNDRGQHCVCSEVTQEFLDYTKAQGNDLSTPL-PHFPGLKAGDRWCLCSSRWLQAQRAGKAPLVVLESTHEKAMEVVPLALLKEYSS 139
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A6H5JIX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX8_9PHAE) HSP 1 Score: 193 bits (490), Expect = 3.020e-61 Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1
Query: 13 QSCSLPGGPTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
++CSLPGGPTTGWRRDG+CSTDDND GQHCVCSEVT+EFL+YTKAQGNDLSTP P+FPGL GDRWCLCSSRWLQAQR GKAP VVL+STH+KA++V+ L LL E+SS
Sbjct: 40 KACSLPGGPTTGWRRDGYCSTDDNDRGQHCVCSEVTQEFLDYTKAQGNDLSTPL-PHFPGLKAGDRWCLCSSRWLQAQRAGKAPLVVLDSTHEKAMEVVPLALLKEYSS 147
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A2T2RGJ0_9CYAN (DUF2237 domain-containing protein n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RGJ0_9CYAN) HSP 1 Score: 145 bits (365), Expect = 1.140e-42 Identity = 64/101 (63.37%), Postives = 84/101 (83.17%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHS 336
PTTG+ RDG+C+T D G H VC+E+TEEFLEYTK+QGNDLSTPR + FPGL PGDRWCLC+SRW +A++ G APPV+LES H +A++VISL++L +++
Sbjct: 19 PTTGFYRDGYCNTGGQDFGLHVVCAEMTEEFLEYTKSQGNDLSTPRPMFDFPGLKPGDRWCLCASRWEEARQAGVAPPVILESVHIRAIEVISLDILKQYA 119
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A166UUZ8_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A166UUZ8_9CYAN) HSP 1 Score: 145 bits (365), Expect = 1.180e-42 Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
P TG+ RDGFC+TD D G H +C+EVT EFL+YTKAQGNDLSTP + FPGL PGDRWCLC+ RW +A G APPVVL STH+ AL+V+SL+LL E++S
Sbjct: 19 PRTGFYRDGFCNTDPQDFGSHVICAEVTAEFLDYTKAQGNDLSTPVPAFHFPGLKPGDRWCLCALRWKEALEAGVAPPVVLASTHENALEVVSLDLLQEYAS 120
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A0P7AZS1_9FLAO (Uncharacterized protein n=1 Tax=Croceitalea dokdonensis DOKDO 023 TaxID=1300341 RepID=A0A0P7AZS1_9FLAO) HSP 1 Score: 144 bits (364), Expect = 1.480e-42 Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEH 333
P TG+ RDGFC T D G H VC+ +TEEFL YTK+QGNDLSTP + Y FPGL PGD+WCLC+SRW QA R GKAP V+LE+TH+KAL++I ELL+EH
Sbjct: 17 PKTGFYRDGFCKTGPEDVGTHVVCAIMTEEFLVYTKSQGNDLSTPIKMYQFPGLKPGDKWCLCASRWKQAYRAGKAPDVLLEATHEKALEIIDFELLLEH 116
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A261KXW2_9CYAN (Uncharacterized protein n=3 Tax=Oscillatoriales TaxID=1150 RepID=A0A261KXW2_9CYAN) HSP 1 Score: 144 bits (363), Expect = 2.100e-42 Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHS 336
P TG+ RDG+C T +D G H VC+E+T +FLE+TK +GNDLSTPR Y FPGL PGDRWCLC+SRW +A G APPVVL +THQKAL+V+ LE+L EHS
Sbjct: 19 PMTGFYRDGYCQTGASDFGSHVVCAELTADFLEFTKRRGNDLSTPRLEYSFPGLKPGDRWCLCASRWKEALDSGVAPPVVLSATHQKALEVVPLEVLQEHS 119
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A6M0FMV3_9CYAN (DUF2237 domain-containing protein n=18 Tax=Okeania TaxID=1458928 RepID=A0A6M0FMV3_9CYAN) HSP 1 Score: 144 bits (363), Expect = 2.310e-42 Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHS 336
P TG+ RDGFC T +D G H +C+ VT EFLE+TK +GNDLSTPR Y FPGL PGDRWCLC+SRW +A G APPVVL +THQKAL+V+ LE+L EH+
Sbjct: 19 PMTGFYRDGFCQTGPSDFGSHVICAAVTAEFLEFTKRRGNDLSTPRPEYSFPGLKPGDRWCLCASRWKEALDSGVAPPVVLSATHQKALEVVPLEVLQEHA 119
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A6T9YYR6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A6T9YYR6_9RHOD) HSP 1 Score: 145 bits (366), Expect = 3.580e-42 Identity = 65/98 (66.33%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPYFPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLME 330
P TGW RDGFC T+ D GQHCVC+ +T+ FL+YTK+QGNDLSTPR FPGL PGD+WCLC+SRW QA G AP VVL +TH+KALD+I+LE+L E
Sbjct: 74 PLTGWNRDGFCCTEVADFGQHCVCASLTKSFLDYTKSQGNDLSTPRGS-FPGLKPGDKWCLCTSRWKQAHAAGCAPEVVLSATHEKALDLIALEVLRE 170
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A8J6QQ26_9CYAN (DUF2237 domain-containing protein n=2 Tax=Synechococcaceae TaxID=1890426 RepID=A0A8J6QQ26_9CYAN) HSP 1 Score: 142 bits (358), Expect = 1.140e-41 Identity = 66/102 (64.71%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEHSS 339
P TGW RDGFC TD D G+H VC V E FL YT+AQGNDLSTP Y FPGL PGD WC+C+ RWL+A DG APPV LE+ Q AL+VI LELL EH+S
Sbjct: 17 PMTGWYRDGFCRTDGADLGRHTVCCVVDERFLSYTRAQGNDLSTPMPQYGFPGLKPGDHWCVCAGRWLEAYEDGMAPPVRLEACEQSALEVIPLELLQEHAS 118
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Match: A0A2Z4LTI4_9FLAO (Uncharacterized protein n=1 Tax=Muricauda aurantiaca TaxID=1383885 RepID=A0A2Z4LTI4_9FLAO) HSP 1 Score: 142 bits (357), Expect = 2.010e-41 Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query: 37 PTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQGNDLSTPRRPY-FPGLNPGDRWCLCSSRWLQAQRDGKAPPVVLESTHQKALDVISLELLMEH 333
P TG+ RDGFC T D G H VC+ +TEEFL YTKAQGNDLS+P Y FPGL PG++WCLC+SRW QAQ+ GKAP VVLE+TH+KAL +I ELL+EH
Sbjct: 24 PKTGFYRDGFCRTGPEDVGTHVVCAIMTEEFLIYTKAQGNDLSSPMPMYDFPGLQPGNKWCLCASRWKQAQKAGKAPVVVLEATHEKALQIIDFELLLEH 123 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59299.13441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59299.13441.1 >prot_H-elongata_contig59299.13441.1 ID=prot_H-elongata_contig59299.13441.1|Name=mRNA_H-elongata_contig59299.13441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MLRDQSCSLPGGPTTGWRRDGFCSTDDNDHGQHCVCSEVTEEFLEYTKAQback to top mRNA from alignment at H-elongata_contig59299:840..2197+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59299.13441.1 ID=mRNA_H-elongata_contig59299.13441.1|Name=mRNA_H-elongata_contig59299.13441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1358bp|location=Sequence derived from alignment at H-elongata_contig59299:840..2197+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59299:840..2197+ >mRNA_H-elongata_contig59299.13441.1 ID=mRNA_H-elongata_contig59299.13441.1|Name=mRNA_H-elongata_contig59299.13441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig59299:840..2197+ (Himanthalia elongata Himel1 dioecious)back to top |