mRNA_H-elongata_contig59283.13439.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59283.13439.1
Unique NamemRNA_H-elongata_contig59283.13439.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: D8LU67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU67_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.220e-23
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   13 GTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSAY 186
            GTNAE STIG SICAERAA+CKLRE ++CKRVTKVVVVTD   PLAPG+LCREFLSA+
Sbjct:    6 GTNAEASTIGSSICAERAAMCKLREESNCKRVTKVVVVTDHQHPLAPGVLCREFLSAH 63
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A6H5KDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.560e-21
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    4 WRLGTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAP---------------GILCREFLSAY 186
            W  GTNAE STIG SICAERAA+CKLRE ++CKRVTKVVVVTD   PLAP               G+LCREFLSA+
Sbjct:    3 WPTGTNAESSTIGSSICAERAAMCKLREESNCKRVTKVVVVTDYQHPLAPDTLERFRFVLFCVTQGVLCREFLSAH 78
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A835ZD32_9STRA (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD32_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.320e-18
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   13 GTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSAY 186
            GTNAEP  IGGSICAERAALCKLREA    RV  V VVTD+  PL P +LCREFL+ +
Sbjct:   67 GTNAEPGYIGGSICAERAALCKLREAPFVARVASVTVVTDADAPLCPSVLCREFLATH 124
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A7S4T622_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T622_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.060e-15
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   10 LGTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSAY 186
            +GTN EP  I GSICAERAAL +LR      RVTK+V+VTDSP  ++PG+LCREF+ ++
Sbjct:   94 VGTNDEPHAISGSICAERAALVQLRFLPQVSRVTKIVIVTDSPSEISPGLLCREFMVSH 152
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A7S2VI49_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VI49_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.110e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   10 LGTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSAY 186
            +GTN EP +I GSICAERAAL +LR   + + +TK+V+VTD    ++PG+LCREF++++
Sbjct:  203 VGTNDEPHSIAGSICAERAALMQLRFMPNLESITKIVIVTDDADSVSPGMLCREFMASH 261
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A482UNZ6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UNZ6_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 4.080e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   10 LGTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSA 183
            +GTNAEP  IGGSICAER+A+ ++R       + KV + TD+  P+APG LCRE+L++
Sbjct:   62 IGTNAEPGYIGGSICAERSAITRMRFLPS-PILLKVAITTDNDLPIAPGALCREYLNS 118
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A7S1D5L8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5L8_CYCTE)

HSP 1 Score: 60.8 bits (146), Expect = 1.780e-9
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   40 GGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSA 183
            G SICAERAAL +LR   D   VTK+V+VTD+P  +APG+LCREF+S+
Sbjct:    1 GNSICAERAALTQLRWIPDAV-VTKIVIVTDAPHAVAPGMLCREFMSS 47
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A7S1XRR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRR1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.810e-8
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   13 GTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSAY 186
            G N E S+IG SICAERAAL KLRE   C+     ++  +    L+ G LCREFL+ +
Sbjct:   33 GANGECSSIGNSICAERAALIKLREMPGCEPAALYLISDNGDACLSCGPLCREFLAEH 90
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A7E4W884_PANRE (Cytidine deaminase n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4W884_PANRE)

HSP 1 Score: 52.0 bits (123), Expect = 9.760e-7
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   13 GTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLAPGILCREFLSAY 186
            G N E ++ GG+ICAER+A+C+   A   +    VVVVT SP P +P  LCR+FL  +
Sbjct:   46 GGNVENASYGGTICAERSAVCRA-VAEGHRSFKAVVVVTHSPKPASPCGLCRQFLFEF 102
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BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Match: A0A1I8BR96_MELHA (Cytidine deaminase n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8BR96_MELHA)

HSP 1 Score: 48.1 bits (113), Expect = 3.120e-5
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   13 GTNAEPSTIGGSICAERAALCKLREATDCKRVTK--VVVVTDSPGPLAPGILCREFLSAY 186
            G N E ++ GG+ICAER+A+C    +   K      + V T+ P P AP  +CR+FL+ +
Sbjct:   47 GVNIENASYGGTICAERSAICSAISSVGFKNFCPKGICVTTNLPYPAAPCGICRQFLAEF 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59283.13439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LU67_ECTSI1.220e-2381.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDJ5_9PHAE6.560e-2163.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD32_9STRA7.320e-1868.97CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S4T622_9STRA2.060e-1559.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2VI49_9STRA3.110e-1352.54Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A482UNZ6_9ARCH4.080e-1151.72Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1D5L8_CYCTE1.780e-962.50Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1XRR1_9STRA9.810e-848.28Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7E4W884_PANRE9.760e-746.55Cytidine deaminase n=1 Tax=Panagrellus redivivus T... [more]
A0A1I8BR96_MELHA3.120e-538.33Cytidine deaminase n=1 Tax=Meloidogyne hapla TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59283contigH-elongata_contig59283:954..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue6.4e-19
Seed eggNOG ortholog2880.D8LU67
EggNOG OGs2CYIE@1,2S4MG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytidine deaminase-like
Ec32 orthologEc-16_000420.1
Exons2
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.3269615-CDS-H-elongata_contig59283:953..11071622930961.3269615-CDS-H-elongata_contig59283:953..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59283 954..1107 +
1691679641.539894-CDS-H-elongata_contig59283:953..11071691679641.539894-CDS-H-elongata_contig59283:953..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59283 954..1107 +
1622930961.3465898-CDS-H-elongata_contig59283:2074..21061622930961.3465898-CDS-H-elongata_contig59283:2074..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59283 2075..2106 +
1691679641.5535846-CDS-H-elongata_contig59283:2074..21061691679641.5535846-CDS-H-elongata_contig59283:2074..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59283 2075..2106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59283.13439.1prot_H-elongata_contig59283.13439.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59283 954..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59283.13439.1

>prot_H-elongata_contig59283.13439.1 ID=prot_H-elongata_contig59283.13439.1|Name=mRNA_H-elongata_contig59283.13439.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MWRLGTNAEPSTIGGSICAERAALCKLREATDCKRVTKVVVVTDSPGPLA
PGILCREFLSAY
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mRNA from alignment at H-elongata_contig59283:954..2106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59283.13439.1 ID=mRNA_H-elongata_contig59283.13439.1|Name=mRNA_H-elongata_contig59283.13439.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1153bp|location=Sequence derived from alignment at H-elongata_contig59283:954..2106+ (Himanthalia elongata Himel1 dioecious)
ATGTGGAGATTAGGTACCAACGCGGAGCCGAGCACGATAGGAGGGTCTAT
CTGCGCGGAGAGAGCGGCTCTATGTAAGCTCCGCGAGGCGACAGACTGCA
AACGCGTCACCAAGGTGGTCGTTGTCACCGACAGCCCTGGACCCTTGGCC
CCCGGTAAATCGATTATGAACCAGCGACATAGTAATATTGGAGTTTGCGG
GGGGGAGGGGGGGGTCTGTGACGGGGGCGTTCTAAAGTTTTGCATGCTTT
AGCTGTTTGACCAATGACCATTGACCATTGACCATTGACTACGCGTCCTC
TGGAGGGCTGATCGTTGTTCCTACATGATGGATCGATCGATGGCTAATCG
CTCCTTCCTGTTCTGCCTTCCTGAGTTTTCTCCTTTTCAGGCCACTCATC
ATCATTACTCACCACTCATGACGTGTTACTTTCTTATCAGACCCCAATTA
TAGCTATGACCTTCGTTTCGCCTTCGTTTGGCTGTCCAATGCTTCAAAAT
GATCTTCCTTAAAATTTCCCTGGGTTAGCCATATGACGGTTATTATCATT
TTCATAGAACGGTCATTCTCTTTTTCATAGAACGGTCATTCTCCTTTTCA
TATAACCGTCATTCTCCTTTTCATATAACGACCATTCTCCTTTTCATAGA
ACGGTCATTCTCCTTTTCATATAGCCATCATTTTCCTTTTCATAGAACGG
TCATTCTCCTTTTCATGTAACGACCATTCTCCTTCTCATAGAACGGTCAT
TCTCCTTTTCATATAACGACCATTCTCCTTTTCATACAACGGCCATTCTT
TCATTCGAACCGCGATCACACTTGTACTTGCCCTCGTCTTCCTTATCTAC
TTTCCGAAGTCTTCGCCTACGTCCTCGGAGCAGAAGTCAATGTCGCCATT
AAAATTCCTGAGTTTGATGGCGACATTCAACTTTCTCCCTTTATCCTTGT
CCATGAAAATGCTGGCTTTATTGAAACCTATTTCTATCATTTAGGATCAT
TTAGAATATACGCTTATTTATCTTATATCCAGAAGCGCCTGCTACTTCCC
TCTTCAATTCTCACAGACTTTGCATTCTAACTTCCTCGGTCTACCACTTA
ACGCCACCCCGCCCCTGGCAGGCATCCTCTGTAGAGAGTTCTTATCGGCC
TAT
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Coding sequence (CDS) from alignment at H-elongata_contig59283:954..2106+

>mRNA_H-elongata_contig59283.13439.1 ID=mRNA_H-elongata_contig59283.13439.1|Name=mRNA_H-elongata_contig59283.13439.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig59283:954..2106+ (Himanthalia elongata Himel1 dioecious)
ATGTGGAGATTAGGTACCAACGCGGAGCCGAGCACGATAGGAGGGTCTAT
CTGCGCGGAGAGAGCGGCTCTATGTAAGCTCCGCGAGGCGACAGACTGCA
AACGCGTCACCAAGGTGGTCGTTGTCACCGACAGCCCTGGACCCTTGGCC
CCCGATGTGGAGATTAGGTACCAACGCGGAGCCGAGCACGATAGGAGGGT
CTATCTGCGCGGAGAGAGCGGCTCTATGTAAGCTCCGCGAGGCGACAGAC
TGCAAACGCGTCACCAAGGTGGTCGTTGTCACCGACAGCCCTGGACCCTT
GGCCCCCGGCATCCTCTGTAGAGAGTTCTTATCGGCCTATGCATCCTCTG
TAGAGAGTTCTTATCGGCCTAT
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