mRNA_H-elongata_contig59255.13436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59255.13436.1
Unique NamemRNA_H-elongata_contig59255.13436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59255.13436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59255contigH-elongata_contig59255:2480..3028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.1118202-CDS-H-elongata_contig59255:2479..29681622930961.1118202-CDS-H-elongata_contig59255:2479..2968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59255 2480..2968 +
1691679641.4823115-CDS-H-elongata_contig59255:2479..29681691679641.4823115-CDS-H-elongata_contig59255:2479..2968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59255 2480..2968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.1358256-UTR-H-elongata_contig59255:2968..30281622930961.1358256-UTR-H-elongata_contig59255:2968..3028Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59255 2969..3028 +
1691679641.4949727-UTR-H-elongata_contig59255:2968..30281691679641.4949727-UTR-H-elongata_contig59255:2968..3028Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59255 2969..3028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59255.13436.1prot_H-elongata_contig59255.13436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59255 2480..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59255.13436.1

>prot_H-elongata_contig59255.13436.1 ID=prot_H-elongata_contig59255.13436.1|Name=mRNA_H-elongata_contig59255.13436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
SSPLPLPVPPHSPLWRWVLTPRFLPPLSLNATALVTDVFSASIPTACNVA
TAAASSGAWSLHAPSLLPQVVRLLSVRSVLCLRSVLVARGSLQLPPLPPT
SPRHSPQICSLRLPISPPPPPSQPLWVPPPLPLRWHETLYICSLLELDCS
LELGLVDRRLGL*
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mRNA from alignment at H-elongata_contig59255:2480..3028+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59255.13436.1 ID=mRNA_H-elongata_contig59255.13436.1|Name=mRNA_H-elongata_contig59255.13436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=549bp|location=Sequence derived from alignment at H-elongata_contig59255:2480..3028+ (Himanthalia elongata Himel1 dioecious)
TCATCGCCACTGCCGCTACCAGTGCCGCCGCATTCGCCACTGTGGCGGTG
GGTACTCACGCCTCGGTTTCTCCCGCCCCTCTCTCTTAACGCTACGGCGT
TGGTGACCGATGTATTCTCCGCCTCAATTCCTACAGCCTGCAATGTCGCG
ACAGCAGCCGCCAGCTCCGGCGCGTGGTCCCTGCATGCCCCATCGTTACT
TCCACAGGTCGTGCGGCTGCTGTCTGTGCGATCGGTTCTTTGCCTTCGGT
CGGTACTGGTGGCGCGAGGCTCCCTTCAACTCCCTCCTCTGCCGCCCACG
TCGCCGCGGCACTCGCCACAAATATGTTCTCTTCGACTACCTATTTCTCC
TCCCCCGCCACCGTCGCAGCCGCTGTGGGTGCCTCCGCCACTACCGCTCC
GATGGCACGAGACCTTGTACATTTGCTCATTGCTAGAGCTAGACTGTTCG
TTGGAGCTGGGGCTGGTCGACCGACGGCTCGGGCTATAGCTTCGCGGGTC
CTCGCGGAAAGCGCCCGGTTCAGAACGAAGGACGAGTGTCGGCAATTTT
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Coding sequence (CDS) from alignment at H-elongata_contig59255:2480..3028+

>mRNA_H-elongata_contig59255.13436.1 ID=mRNA_H-elongata_contig59255.13436.1|Name=mRNA_H-elongata_contig59255.13436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig59255:2480..3028+ (Himanthalia elongata Himel1 dioecious)
TCATCGCCACTGCCGCTACCAGTGCCGCCGCATTCGCCACTGTGGCGGTG
GGTACTCACGCCTCGGTTTCTCCCGCCCCTCTCTCTTAACGCTACGGCGT
TGGTGACCGATGTATTCTCCGCCTCAATTCCTACAGCCTGCAATGTCGCG
ACAGCAGCCGCCAGCTCCGGCGCGTGGTCCCTGCATGCCCCATCGTTACT
TCCACAGGTCGTGCGGCTGCTGTCTGTGCGATCGGTTCTTTGCCTTCGGT
CGGTACTGGTGGCGCGAGGCTCCCTTCAACTCCCTCCTCTGCCGCCCACG
TCGCCGCGGCACTCGCCACAAATATGTTCTCTTCGACTACCTATTTCTCC
TCCCCCGCCACCGTCGCAGCCGCTGTGGGTGCCTCCGCCACTACCGCTCC
GATGGCACGAGACCTTGTACATTTGCTCATTGCTAGAGCTAGACTGTTCG
TTGGAGCTGGGGCTGGTCGACCGACGGCTCGGGCTATAGTCATCGCCACT
GCCGCTACCAGTGCCGCCGCATTCGCCACTGTGGCGGTGGGTACTCACGC
CTCGGTTTCTCCCGCCCCTCTCTCTTAACGCTACGGCGTTGGTGACCGAT
GTATTCTCCGCCTCAATTCCTACAGCCTGCAATGTCGCGACAGCAGCCGC
CAGCTCCGGCGCGTGGTCCCTGCATGCCCCATCGTTACTTCCACAGGTCG
TGCGGCTGCTGTCTGTGCGATCGGTTCTTTGCCTTCGGTCGGTACTGGTG
GCGCGAGGCTCCCTTCAACTCCCTCCTCTGCCGCCCACGTCGCCGCGGCA
CTCGCCACAAATATGTTCTCTTCGACTACCTATTTCTCCTCCCCCGCCAC
CGTCGCAGCCGCTGTGGGTGCCTCCGCCACTACCGCTCCGATGGCACGAG
ACCTTGTACATTTGCTCATTGCTAGAGCTAGACTGTTCGTTGGAGCTGGG
GCTGGTCGACCGACGGCTCGGGCTATAG
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