mRNA_H-elongata_contig59231.13434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59231.13434.1
Unique NamemRNA_H-elongata_contig59231.13434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59231.13434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59231contigH-elongata_contig59231:535..3045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size850
Cds size849
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59231.13434.1prot_H-elongata_contig59231.13434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59231 535..3045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.9721427-CDS-H-elongata_contig59231:534..6541622930960.9721427-CDS-H-elongata_contig59231:534..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59231 535..654 -
1691679641.4295397-CDS-H-elongata_contig59231:534..6541691679641.4295397-CDS-H-elongata_contig59231:534..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59231 535..654 -
1622930960.988839-CDS-H-elongata_contig59231:1358..19371622930960.988839-CDS-H-elongata_contig59231:1358..1937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59231 1359..1937 -
1691679641.4384804-CDS-H-elongata_contig59231:1358..19371691679641.4384804-CDS-H-elongata_contig59231:1358..1937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59231 1359..1937 -
1622930961.0014691-CDS-H-elongata_contig59231:2895..30451622930961.0014691-CDS-H-elongata_contig59231:2895..3045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59231 2896..3045 -
1691679641.44728-CDS-H-elongata_contig59231:2895..30451691679641.44728-CDS-H-elongata_contig59231:2895..3045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59231 2896..3045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59231.13434.1

>prot_H-elongata_contig59231.13434.1 ID=prot_H-elongata_contig59231.13434.1|Name=mRNA_H-elongata_contig59231.13434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
VSDLKKKVQFYRERLASHEPPLPEDAVNDRRAKAREWQRSLTRSRSRGGM
NDSEFEASDSGHSRSPLSSRLDEHSRFSRTETGSTLASTPGSLYSQPSRG
NTPAPSLSASVSGSKSFVGEVAAAVAAAAAAERRLRAGPPATTGGGDGGG
GGDLVPPPLGRIRLSSFGLSTSPTGSLPAVAADSSGDRSPAPLGSSRIGM
RRKIVIPPATPGAEANDRVARDKEERSARAAQAAAARSAWVYEGEHQTPT
GSRNLLFGGGGGGGGVKSRVSAVSTGQWPCEF*
back to top

mRNA from alignment at H-elongata_contig59231:535..3045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59231.13434.1 ID=mRNA_H-elongata_contig59231.13434.1|Name=mRNA_H-elongata_contig59231.13434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2511bp|location=Sequence derived from alignment at H-elongata_contig59231:535..3045- (Himanthalia elongata Himel1 dioecious)
GTGTCAGACTTGAAGAAAAAGGTTCAGTTTTATCGAGAGCGGCTGGCCTC
GCACGAGCCTCCCTTGCCCGAAGACGCCGTGAACGACCGCCGGGCAAAGG
CGAGAGAGTGGCAGCGGTCGTTGACCAGGAGCAGGAGCCGCGGAGGGATG
GTAAGCGTTTCTCCGTCCTGTCTTGACTCTCTGTCCATTTCTTTATATAT
ATATATATATGTAGTTGGCGGGAGCGACACAGTTGTAGTTCATAAAGTAT
ATATAAATTAAGTTATTTCCCCAGCTGTCTTCAAAAAAAATATCTTGTGA
TGGCTATTTCTCTTCGCTGAAAGGGCCGCCGAGTGTTTGGGGTGGCGAGC
GGAAGCGGTGCTACTGCACGCTTCAAGAGACAGCAGGGGCTTTTGTCAGT
GTTGATAAGCTTATTCTCTTGATCATGTTGATGGCGGTCGTATTGATGAG
CTTTTCCAAGATTGGTGTACGGTTGTGTACCTGAGAGTGGGGTTTTTCTT
ATATACCTGTTTTCGCGTACGGCAAAGGCAAAACGTCTCGAGGAAATAGG
AGCAAAAAGTCATACGTGGGTTCAGAGAGACGAAGAGGTCACGTGAGTAT
TGTGGGGGAGGGGGGTTGCAACTGTCCCGACCACGTAGAACTATCGTAAT
GTGCGTAGGGTCGACCGCTGCTGTCTGCGTGTACGAGCCCGCTGCTGTAA
CAAAATTGTTTAAATAACCCGCCCGACTGTATTCGCGATCGTTTTATGCT
AATCTCCTTATCTTAACCGCTATGGAACTCGATATGTTTTAAAAAAAAAC
TATTTCTAGTCTCCTTATCTTTACCGCTATGAAACTCGATATGTTTTGTA
AAACATTGTTTTCAATATAAAACTTGAAATCCATTTCCAGAAAGGGTTAA
TTTAACCCTTTTTAGTTCCAGCCGGTGTATAATACTAATGTTTACTAATA
TTCAAATATAATATACTAATAATAATATTGAATACTAGATAAAACTCTAG
ACTAGACCAAGTTAATCTTTGCTTGACAATAAAATCGCGTGCGGCGTCCG
TGTGTGGCATTTAAAAAATATCTCTGGTGATATCGACCCATTGATCGACC
GAGGTCAGAACGACTCGGAGTTCGAAGCGAGCGACTCCGGTCACAGCCGC
TCCCCGCTCTCTTCGCGCCTGGACGAACACTCGCGATTCTCGAGGACAGA
GACTGGGTCAACCCTCGCCTCCACCCCGGGGTCTTTGTACTCTCAGCCGT
CTCGAGGAAACACGCCCGCCCCATCTCTTTCAGCATCGGTAAGCGGCAGC
AAATCGTTCGTGGGGGAAGTTGCTGCAGCGGTGGCGGCGGCAGCGGCGGC
CGAGAGGAGATTGAGGGCAGGGCCCCCCGCCACCACTGGAGGCGGCGATG
GCGGCGGCGGGGGGGATCTTGTGCCCCCTCCCCTGGGTCGAATACGCCTC
TCAAGCTTCGGGCTGTCGACATCCCCGACGGGGTCCTTGCCTGCCGTTGC
TGCCGATTCGAGCGGCGATCGTTCTCCTGCCCCTCTTGGTTCCTCACGAA
TCGGAATGAGACGGAAGATCGTGATTCCACCTGCGACGCCCGGGGCGGAG
GCAAACGACCGCGTCGCGAGGGATAAGGAGGAGAGGTCGGCGCGGGCGGC
TCAGGCGGCGGCGGCACGCTCGGCTTGGGTGTACGAGGTGTGCGACGGTG
GTCAGGGTGAATTGAAGAGTGCTTCGAGGGCGCGTCTCCGGGTGCGGTTT
TCAGACGGAATATTCTGGCAAGGGGGGGGGGTTCAGGGAAATACAGGGCA
GTCTGCGCCCAGTATTTTTCGCGCTGCGCGTTCCATATATATATATTTAT
GTACAGTATAGCATTTTGTGTGTTGAACTAGTTGCCCTTTTTTTTGTCAA
AGCGGGACTGTTACGCGATGCATCGGCTGCTAGACGCCAAGGTCTTTTCC
TGGCAGTTGCGTTGTGCGATACGCAATGATGATGTAGCAGCCACATAAGA
AGATATGACAGCTAAACCAGTACGTTTTTTATGGAAGCTACGAGCTCACG
ATCGCTTGTGGCAAAAGGTGCGCGTACACTTCGTGGTGTAAGGTGCTTCC
GGTGTCCCTCCGAAGAAGTGAAGAGCTGTTGAACCCACGGTACTTTTGGC
ATCCCTCTTGAGCAAGGCCCGACCACATGAAACTTGTTGCTTGTAGTTGA
CGTTGACGAGATGCATGCTTTGTCCGGGGTGGGGGGCTGTTTATACATAA
CTCTCTCCCTCCCTATCTCCCTCTCTTGTCTCTTGTATCTCTCTTTGCTT
TGTTTTGTTTCTTTTCCCTTGTATACCGCGGACTATGACCACTTTGTGTA
ATGGTTGTGTTGTTAACACCTGTATGCACGGTATGTACAAGGGGGAGCAC
CAAACCCCCACGGGATCGCGCAATTTGCTATTTGGCGGCGGCGGCGGCGG
TGGGGGCGTGAAATCACGTGTCAGCGCCGTCTCGACCGGACAGTGGCCAT
GTGAGTTTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59231:535..3045-

>mRNA_H-elongata_contig59231.13434.1 ID=mRNA_H-elongata_contig59231.13434.1|Name=mRNA_H-elongata_contig59231.13434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig59231:535..3045- (Himanthalia elongata Himel1 dioecious)
GTGTCAGACTTGAAGAAAAAGGTTCAGTTTTATCGAGAGCGGCTGGCCTC
GCACGAGCCTCCCTTGCCCGAAGACGCCGTGAACGACCGCCGGGCAAAGG
CGAGAGAGTGGCAGCGGTCGTTGACCAGGAGCAGGAGCCGCGGAGGGATG
GTGTCAGACTTGAAGAAAAAGGTTCAGTTTTATCGAGAGCGGCTGGCCTC
GCACGAGCCTCCCTTGCCCGAAGACGCCGTGAACGACCGCCGGGCAAAGG
CGAGAGAGTGGCAGCGGTCGTTGACCAGGAGCAGGAGCCGCGGAGGGATG
AACGACTCGGAGTTCGAAGCGAGCGACTCCGGTCACAGCCGCTCCCCGCT
CTCTTCGCGCCTGGACGAACACTCGCGATTCTCGAGGACAGAGACTGGGT
CAACCCTCGCCTCCACCCCGGGGTCTTTGTACTCTCAGCCGTCTCGAGGA
AACACGCCCGCCCCATCTCTTTCAGCATCGGTAAGCGGCAGCAAATCGTT
CGTGGGGGAAGTTGCTGCAGCGGTGGCGGCGGCAGCGGCGGCCGAGAGGA
GATTGAGGGCAGGGCCCCCCGCCACCACTGGAGGCGGCGATGGCGGCGGC
GGGGGGGATCTTGTGCCCCCTCCCCTGGGTCGAATACGCCTCTCAAGCTT
CGGGCTGTCGACATCCCCGACGGGGTCCTTGCCTGCCGTTGCTGCCGATT
CGAGCGGCGATCGTTCTCCTGCCCCTCTTGGTTCCTCACGAATCGGAATG
AGACGGAAGATCGTGATTCCACCTGCGACGCCCGGGGCGGAGGCAAACGA
CCGCGTCGCGAGGGATAAGGAGGAGAGGTCGGCGCGGGCGGCTCAGGCGG
CGGCGGCACGCTCGGCTTGGGTGTACGAGAACGACTCGGAGTTCGAAGCG
AGCGACTCCGGTCACAGCCGCTCCCCGCTCTCTTCGCGCCTGGACGAACA
CTCGCGATTCTCGAGGACAGAGACTGGGTCAACCCTCGCCTCCACCCCGG
GGTCTTTGTACTCTCAGCCGTCTCGAGGAAACACGCCCGCCCCATCTCTT
TCAGCATCGGTAAGCGGCAGCAAATCGTTCGTGGGGGAAGTTGCTGCAGC
GGTGGCGGCGGCAGCGGCGGCCGAGAGGAGATTGAGGGCAGGGCCCCCCG
CCACCACTGGAGGCGGCGATGGCGGCGGCGGGGGGGATCTTGTGCCCCCT
CCCCTGGGTCGAATACGCCTCTCAAGCTTCGGGCTGTCGACATCCCCGAC
GGGGTCCTTGCCTGCCGTTGCTGCCGATTCGAGCGGCGATCGTTCTCCTG
CCCCTCTTGGTTCCTCACGAATCGGAATGAGACGGAAGATCGTGATTCCA
CCTGCGACGCCCGGGGCGGAGGCAAACGACCGCGTCGCGAGGGATAAGGA
GGAGAGGTCGGCGCGGGCGGCTCAGGCGGCGGCGGCACGCTCGGCTTGGG
TGTACGAGGGGGAGCACCAAACCCCCACGGGATCGCGCAATTTGCTATTT
GGCGGCGGCGGCGGCGGTGGGGGCGTGAAATCACGTGTCAGCGCCGTCTC
GACCGGACAGTGGCCATGTGAGTTTTAAGGGGAGCACCAAACCCCCACGG
GATCGCGCAATTTGCTATTTGGCGGCGGCGGCGGCGGTGGGGGCGTGAAA
TCACGTGTCAGCGCCGTCTCGACCGGACAGTGGCCATGTGAGTTTTAA
back to top