mRNA_H-elongata_contig59188.13430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59188.13430.1
Unique NamemRNA_H-elongata_contig59188.13430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A6H5JCL8_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCL8_9PHAE)

HSP 1 Score: 429 bits (1104), Expect = 3.270e-143
Identity = 216/275 (78.55%), Postives = 238/275 (86.55%), Query Frame = 1
Query:    1 SRRQMVSEIDVLVALAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSSGCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNLPALESDVG 825
            S  ++V+E+DVL++L VC H WDW RP+LLPVGSQT+ IKGLRHPSVEA+RG+  FIPNDI++ NDSR+ IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPA EA M V+DRICAR+GASDNQLRGVSTFMAEMLET AILR+ +R+SLVIVDELGRGTSTCDGFGIAWAVADRL+SSG LCLFATHFHELTA+E +K  KGVQNLHV AEAD  SNKLTMLYKV +GSCDRSFGIHVARIANFP HVV EAE LA  LE GE L   A  SD G
Sbjct:  482 SAAKIVAELDVLLSLCVCVHLWDWVRPRLLPVGSQTIDIKGLRHPSVEAARGAGLFIPNDIKLGNDSRMTIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAEEAVMTVIDRICARVGASDNQLRGVSTFMAEMLETTAILRKANRQSLVIVDELGRGTSTCDGFGIAWAVADRLISSGALCLFATHFHELTAIEQEKGGKGVQNLHVTAEADSASNKLTMLYKVMQGSCDRSFGIHVARIANFPGHVVSEAETLARCLENGEPLIGRANSSDNG 756          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A1D2A1F4_AUXPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1F4_AUXPR)

HSP 1 Score: 263 bits (673), Expect = 9.590e-80
Identity = 149/260 (57.31%), Postives = 181/260 (69.62%), Query Frame = 1
Query:    7 RQMVSEIDVLVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAN-DSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAA 774
            R +++E+DVLVA A  A T    + RP LLP     V++ G RHP VE   G  +FIPND  M   +S   I+TGPNM GKSTFIR VGI+ LLAQ+GS+VP  +A++ V D I AR+GA D+Q RGVSTFMAEMLE+ AIL+     SLVI+DELGRGTST DG G+AWA+++ LM+  GC  LFATHFHELTAL   +   GV+NLHV A  D  S  LTMLY+V  GSCD+SFGIHVA  A FP  +VE A + AAA
Sbjct:  384 RSVLAELDVLVAFADVAVTAPRPYVRPSLLPADGGRVELVGCRHPCVELQEGV-DFIPNDCVMQRGESWFQIITGPNMGGKSTFIRQVGISVLLAQVGSWVPCTQASIAVRDAIFARVGAGDSQARGVSTFMAEMLESAAILKGATPASLVIIDELGRGTSTWDGMGLAWAISEHLMNGIGCPTLFATHFHELTAL---RGAGGVKNLHVGAAIDHTSGALTMLYQVEEGSCDKSFGIHVAEFARFPPAIVEAARKAAAA 639          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A834CYR8_JUGRE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A834CYR8_JUGRE)

HSP 1 Score: 258 bits (658), Expect = 1.160e-78
Identity = 145/268 (54.10%), Postives = 180/268 (67.16%), Query Frame = 1
Query:   13 MVSEIDVLVALA--VCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAND-SRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHD--------KEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALE 780
            M+SE+DVL++ A   C+    + RP ++P     + ++G RHP VEA +   NFIPND ++    S   I+TGPNM GKSTFIR VG+  L+AQ+GSFVP  +A++ V D I AR+GA D QLRGVSTFM EMLET +IL+    +SL+I+DELGRGTST DGFG+AWA+ + L+       LFATHFHELTAL H+        K+  GV N HV A  D  S KLTMLYKV  G+CD+SFGIHVA  ANFPA VV  A   AA LE
Sbjct:  238 MLSELDVLLSFADLACSCPTPYTRPDIIPSDEGDIVLEGSRHPCVEA-QDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCVKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHESPDHGPHKKQTVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPASVVALAREKAAELE 504          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A5J4Y3N7_9CHLO (DNA mismatch repair n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3N7_9CHLO)

HSP 1 Score: 265 bits (677), Expect = 1.250e-78
Identity = 155/271 (57.20%), Postives = 187/271 (69.00%), Query Frame = 1
Query:   13 MVSEIDVLVA---LAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAN-DSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNLPAL 810
            +V+E+DVL+    +AV A T  + RPQ+LP     +K+ G RHP VEA  G  +FI ND  M   +S   I+TGPNM GKST+IR VG+  L+AQ+G FVP  EA + + D I AR+GA D QLRGVSTFMAEMLET AIL+    RSLVI+DELGRGTST DGFG+AWA+++ LM S GC  LFATHFHELTAL   K   GV NLHV    D  S KLTMLY+V+ G+CD+SFGIHVA  ANFP  VV+ A+  AA LE   D + P L
Sbjct:  606 LVAEMDVLLGFAEVAVNAPT-PYVRPQMLPPDDGQLKLVGCRHPCVEAQEGV-DFIKNDCCMQRGESWFQIITGPNMGGKSTYIRQVGVNVLMAQVGCFVPCDEACIAIRDCIFARVGAGDCQLRGVSTFMAEMLETAAILKGATSRSLVIIDELGRGTSTYDGFGLAWAISEHLMESIGCTTLFATHFHELTAL---KGPVGVANLHVETAIDAASGKLTMLYQVSPGACDQSFGIHVAEFANFPPEVVQLAKERAAELE---DFSTPML 868          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A1D2A3J8_AUXPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3J8_AUXPR)

HSP 1 Score: 263 bits (673), Expect = 3.260e-78
Identity = 149/260 (57.31%), Postives = 181/260 (69.62%), Query Frame = 1
Query:    7 RQMVSEIDVLVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAN-DSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAA 774
            R +++E+DVLVA A  A T    + RP LLP     V++ G RHP VE   G  +FIPND  M   +S   I+TGPNM GKSTFIR VGI+ LLAQ+GS+VP  +A++ V D I AR+GA D+Q RGVSTFMAEMLE+ AIL+     SLVI+DELGRGTST DG G+AWA+++ LM+  GC  LFATHFHELTAL   +   GV+NLHV A  D  S  LTMLY+V  GSCD+SFGIHVA  A FP  +VE A + AAA
Sbjct:  597 RSVLAELDVLVAFADVAVTAPRPYVRPSLLPADGGRVELVGCRHPCVELQEGV-DFIPNDCVMQRGESWFQIITGPNMGGKSTFIRQVGISVLLAQVGSWVPCTQASIAVRDAIFARVGAGDSQARGVSTFMAEMLESAAILKGATPASLVIIDELGRGTSTWDGMGLAWAISEHLMNGIGCPTLFATHFHELTAL---RGAGGVKNLHVGAAIDHTSGALTMLYQVEEGSCDKSFGIHVAEFARFPPAIVEAARKAAAA 852          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A8B9RFA9_ASTMX (DNA mismatch repair protein Msh2 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9RFA9_ASTMX)

HSP 1 Score: 248 bits (632), Expect = 1.060e-77
Identity = 137/259 (52.90%), Postives = 180/259 (69.50%), Query Frame = 1
Query:   34 LVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLA-IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLN 798
            +V+ AV +H     + RP++L  GS  + +KG RHP VEA    + FIPND+  A   ++  I+TGPNM GKST+IR VG+  L+AQIG FVP  EA + VVD + AR+GA D+Q++GVSTFMAEMLET AILR     SL+I+DELGRGTST DGFG+AWA+++ + +     CLFATHFHELTAL   +++  V NLHV A      + LTMLY+V +G CD+SFGIHVA +ANFP HV+  A   A  LE+ +D++
Sbjct:    2 VVSFAVVSHAAPVPYVRPRILEKGSGRLILKGSRHPCVEAQDDVA-FIPNDVTFARGEQMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALA--QQEPTVCNLHVTALTT--DSTLTMLYRVKKGVCDQSFGIHVAELANFPKHVIANAREKALELEEFQDIS 255          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: I0YSX7_COCSC (DNA mismatch repair protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YSX7_COCSC)

HSP 1 Score: 262 bits (669), Expect = 1.070e-77
Identity = 153/272 (56.25%), Postives = 182/272 (66.91%), Query Frame = 1
Query:   13 MVSEIDVLVA---LAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAND-SRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNLPALE 813
            MV+E+D+L     LAVCA    + RP +LP  S  +K+   RHP VEA  G   FI ND  M    S   ++TGPNMAGKST+IR VG+A L+AQ+G FV    A + V D I AR+GA D QLRG+STFMAEMLET AIL+    +SLVI+DELGRGTST DGFG+AWA+++ LM   GC  LFATHFHELTAL+      GV N HV    D  S KLTMLY+VT G+CD+SFGIHVA  A FP  VVE A+R AA LE   D + PA E
Sbjct:  605 MVAEMDLLAGFAELAVCAPL-PYVRPTMLPADSSELKLTACRHPCVEAQDGVE-FIANDCHMERGKSWFQVITGPNMAGKSTYIRQVGVAVLMAQVGCFVACEHARIAVRDCIFARVGAGDCQLRGISTFMAEMLETAAILKGASAKSLVIIDELGRGTSTYDGFGLAWAISEHLMQEIGCPTLFATHFHELTALQGPV---GVANKHVETAIDEASGKLTMLYQVTEGACDQSFGIHVAEFARFPPEVVELAKRKAAELE---DFSAPAQE 868          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A8J1TAS5_OWEFU (Ofus.G021027 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TAS5_OWEFU)

HSP 1 Score: 251 bits (641), Expect = 1.160e-77
Identity = 142/267 (53.18%), Postives = 189/267 (70.79%), Query Frame = 1
Query:   13 MVSEIDVLVALA-VCAHT-WDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLA-IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNL 801
            ++S++DVLV+LA V A+    + RP+LL  GS  +K++  RHP +E     + +IPNDIE + D  L  I+TGPNM GKST+IRS G+  L+AQIG FVP + A + +VD I AR+GA D+ ++GVSTFMAEMLET +ILR     SLVI+DELGRGTST DGFG+AWA+++ + +   C CLFATHFHELTAL    E   V NLHV A     ++ LT+LYKV  G CD+SFGIHVA +A+FP+HV++ A+  A+ LE  ++ NL
Sbjct:  110 VISQLDVLVSLAHVSANAPIPYIRPKLLKKGSGILKLEEARHPCLEMQDDVA-YIPNDIEFSKDGHLFHIITGPNMGGKSTYIRSAGVIVLMAQIGCFVPCSSAEISIVDCILARVGAGDSTVKGVSTFMAEMLETASILRCATEESLVIIDELGRGTSTYDGFGLAWAISEYIATKMKCFCLFATHFHELTALAG--EVPTVNNLHVTALTT--NDTLTLLYKVKPGVCDQSFGIHVAELAHFPSHVIQFAKNKASELEDYQNSNL 371          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A6P7VVE2_IXOSC (DNA mismatch repair protein Msh2 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7VVE2_IXOSC)

HSP 1 Score: 248 bits (632), Expect = 4.970e-77
Identity = 137/260 (52.69%), Postives = 180/260 (69.23%), Query Frame = 1
Query:   13 MVSEIDVLVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLA-IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSSG-CLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALE 780
            ++S +DVLV LAV A +    + RP++L  GS  +K+ GLRH  VE S+ +  FIPNDIEM   S    I+TGPNM GKST+IRSV +A L+AQ+GSFVP   A + +VD +  RIGA D QL+GVSTFMAEMLE+  ILR     SLV++DELGRGTST DGFG+AWA+++ L       CLFATHFHELT L   +E   V+N+HV A  D+  +  T+LYKV  G C++SFG+ VA + +FP HV+++A ++ A LE
Sbjct:  118 VISHLDVLVGLAVAAASASKPYVRPKILEKGSGILKMTGLRHACVE-SQDNVMFIPNDIEMKKGSSSCYIITGPNMGGKSTYIRSVALAVLMAQVGSFVPCDSAELSLVDAVLTRIGAGDQQLKGVSTFMAEMLESAHILRNATTDSLVVIDELGRGTSTYDGFGLAWAISEHLSKEADAYCLFATHFHELTELA--QELPCVRNVHVTA--DVREDSFTLLYKVKPGVCNKSFGVEVAELTHFPEHVIKDARQVLAQLE 372          
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A3M7P2Z6_BRAPC (DNA mismatch repair Msh2-like (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P2Z6_BRAPC)

HSP 1 Score: 259 bits (661), Expect = 1.270e-76
Identity = 144/260 (55.38%), Postives = 182/260 (70.00%), Query Frame = 1
Query:   13 MVSEIDVLVALAVCAHTW--DWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSR-LAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALE 780
            +VSE+D+ V+ ++ A +   D+ RP+L P+G+  +++K  RHP +E   G  NFIPND E   D +   I+TGPNM GKST+IR +G+  L+AQIGSFVPA+ A + + D I ARIGA+D Q +G+STFMAEMLET  IL+     SLVI+DELGRGTST DGFG+AWA++D L+    C  LFATHFHELTAL   +E K V N HV A    ES  LT+LYKV  G CD+SFGIHVAR+ANFP HV+E A   A  LE
Sbjct:  593 LVSELDIYVSFSLVAMSSQADYARPKLHPIGTGILRLKDSRHPCLELQEGI-NFIPNDCEFVKDEKNFCIITGPNMGGKSTYIRQIGVLVLMAQIGSFVPASSAEISIFDCILARIGANDCQNKGISTFMAEMLETSFILKTATSNSLVIIDELGRGTSTYDGFGLAWAISDYLVKKVKCFTLFATHFHELTALS--EEIKTVFNSHVSAMTSDES--LTLLYKVKPGVCDQSFGIHVARLANFPEHVIEYAREKAKYLE 847          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCL8_9PHAE3.270e-14378.55DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A1D2A1F4_AUXPR9.590e-8057.31DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A834CYR8_JUGRE1.160e-7854.10DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A5J4Y3N7_9CHLO1.250e-7857.20DNA mismatch repair n=1 Tax=Trebouxia sp. A1-2 Tax... [more]
A0A1D2A3J8_AUXPR3.260e-7857.31DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A8B9RFA9_ASTMX1.060e-7752.90DNA mismatch repair protein Msh2 n=1 Tax=Astyanax ... [more]
I0YSX7_COCSC1.070e-7756.25DNA mismatch repair protein n=2 Tax=Coccomyxa TaxI... [more]
A0A8J1TAS5_OWEFU1.160e-7753.18Ofus.G021027 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A6P7VVE2_IXOSC4.970e-7752.69DNA mismatch repair protein Msh2 n=1 Tax=Ixodes sc... [more]
A0A3M7P2Z6_BRAPC1.270e-7655.38DNA mismatch repair Msh2-like (Fragment) n=1 Tax=B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59188contigH-elongata_contig59188:142..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.7
Seed ortholog evalue2e-117
Seed eggNOG ortholog2880.D8LRS1
KEGG koko:K08735,ko:K08741
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000003,GO:0000217,GO:0000406,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009987,GO:0012501,GO:0016043,GO:0023052,GO:0032300,GO:0032301,GO:0032991,GO:0033554,GO:0034641,GO:0035556,GO:0042771,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0065007,GO:0071704,GO:0071840,GO:0072331,GO:0072332,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.negative regulation of reciprocal meiotic recombination
EggNOG OGsCOG0249@1,KOG0219@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size825
Cds size813
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59188.13430.1prot_H-elongata_contig59188.13430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59188 154..2117 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.4080312-UTR-H-elongata_contig59188:141..1531622930960.4080312-UTR-H-elongata_contig59188:141..153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59188 142..153 +
1691679641.2010555-UTR-H-elongata_contig59188:141..1531691679641.2010555-UTR-H-elongata_contig59188:141..153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59188 142..153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.426073-CDS-H-elongata_contig59188:153..2611622930960.426073-CDS-H-elongata_contig59188:153..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 154..261 +
1691679641.2145767-CDS-H-elongata_contig59188:153..2611691679641.2145767-CDS-H-elongata_contig59188:153..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 154..261 +
1622930960.4402463-CDS-H-elongata_contig59188:458..5581622930960.4402463-CDS-H-elongata_contig59188:458..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 459..558 +
1691679641.2254915-CDS-H-elongata_contig59188:458..5581691679641.2254915-CDS-H-elongata_contig59188:458..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 459..558 +
1622930960.4638424-CDS-H-elongata_contig59188:748..8751622930960.4638424-CDS-H-elongata_contig59188:748..875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 749..875 +
1691679641.2353525-CDS-H-elongata_contig59188:748..8751691679641.2353525-CDS-H-elongata_contig59188:748..875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 749..875 +
1622930960.4835377-CDS-H-elongata_contig59188:1153..12431622930960.4835377-CDS-H-elongata_contig59188:1153..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1154..1243 +
1691679641.246542-CDS-H-elongata_contig59188:1153..12431691679641.246542-CDS-H-elongata_contig59188:1153..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1154..1243 +
1622930960.5018258-CDS-H-elongata_contig59188:1368..14661622930960.5018258-CDS-H-elongata_contig59188:1368..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1369..1466 +
1691679641.2625523-CDS-H-elongata_contig59188:1368..14661691679641.2625523-CDS-H-elongata_contig59188:1368..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1369..1466 +
1622930960.520648-CDS-H-elongata_contig59188:1638..17751622930960.520648-CDS-H-elongata_contig59188:1638..1775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1639..1775 +
1691679641.2722852-CDS-H-elongata_contig59188:1638..17751691679641.2722852-CDS-H-elongata_contig59188:1638..1775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1639..1775 +
1622930960.5347261-CDS-H-elongata_contig59188:1964..21171622930960.5347261-CDS-H-elongata_contig59188:1964..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1965..2117 +
1691679641.2820387-CDS-H-elongata_contig59188:1964..21171691679641.2820387-CDS-H-elongata_contig59188:1964..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 1965..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59188.13430.1

>prot_H-elongata_contig59188.13430.1 ID=prot_H-elongata_contig59188.13430.1|Name=mRNA_H-elongata_contig59188.13430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MVSEIDVLVALAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSS
NFIPNDIEMANDSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAE
ATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDE
LGRGTSTCDGFGIAWAVADRLMSSGCLCLFATHFHELTALEHDKEKKGVQ
NLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAER
LAAALEKGEDLNLPALESDVG
back to top

mRNA from alignment at H-elongata_contig59188:142..2117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59188.13430.1 ID=mRNA_H-elongata_contig59188.13430.1|Name=mRNA_H-elongata_contig59188.13430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1976bp|location=Sequence derived from alignment at H-elongata_contig59188:142..2117+ (Himanthalia elongata Himel1 dioecious)
TCGCGCCGTCAGATGGTTTCGGAGATCGATGTCCTTGTGGCGTTAGCGGT GTGCGCACACACGTGGGATTGGCACCGACCACAGCTACTACCCGTAGGAA GCCAAACCGTTAAGATTAAGGTTAGTAAAGCGATCGATTTCTGCACACAT GACAACGAATGGAACTGCCCTGAGTCCTGTCCAAATTTTCCTCGCTCATA GAGTACCGCGAGGTGTTTTGGGTCGCTACATGCGACACACGACGTGAAAC AGTTTATCGCGTCGCCATCAAGAATATCACTACCCATGGATAAATTTGCT GCACTACCTCTACTCAGGGACTTCGTCATCCAAGCGTCGAGGCTTCTCGG GGATCCAGCAACTTCATCCCCAATGATATCGAGATGGCAAACGACAGTCG CTTGGCAATTGTAACCGGTGAGGTATGATGGTCCTTGTCTTTTTGGATAT ACCGAGTGATGCCGGGTGAATCTGCTGGCGAGACTTTGTTGCATTTTATA GCCTTAAAATGGACTTCAATTGGTTCGTGTGCCGAGTTCGCTAAGCTTTA ACCGCGGTCCTCCATCTTCAACCCAATTCTCCGTCGACGCCTCCCCTTCC ACAAAAGGCCCAAATATGGCAGGCAAGAGCACTTTCATACGATCTGTGGG AATCGCTTGTCTGTTGGCTCAAATAGGAAGCTTTGTTCCCGCCGCTGAGG CTACAATGGTGGTCGTCGATCGAATCTGCGCCAGGTGAAAAGACAGTAAA AACAAATATCAAGAACGTTCTCCCACGGAAACGAGGTTACGTGTACCAGT AGTTATACTTGAGCTGTATTACACTTGATTGTCCATCGGCGCTTGCCGAA ACCTACAAACGTTTGCGCCGCCCCAACGTGCTTCTGTGCTTCTGCAGGAT CGGTGCATCGGACAACCAACTGCGGGGGGNNNNNNNNNNAGTTATACTTG ATTGTCCATCGGCGCTTGCCGAAACCTACAAACGTTTGCGCCGCCCCAAC GTGCTTCTGCAGGATCGGTGCATCGGACAACCAACTGCGGGGGGTTTCTA CCTTTATGGCGGAGATGTTGGAGACAGTGGCAATCTTGCGAAGGGTTGAC AGGTGAGACAAAACGTTGTATTTTACTCTACATGAGACGCTTCGGTGAGA CGTGATATTGATAACCGTCGCTGAATCGCTACGGTTACGTCGCATGTCCG TTGATGTCGCTTGGTTTTCATTCCTAGACGCTCGTTGGTGATCGTGGATG AGCTAGGCAGGGGAACGTCGACGTGTGACGGTTTCGGGATTGCGTGGGCT GTTGCGGACAGGCTTATGTCCTCTGGTGAGTACGTTTAAATATTGTCTAG TTAAACCGATAATGAAGATATATTAAAAAGAGTAACTTTGACTAACACAG TACTACTCGAACTAGCCGCAAAGCACATGGCTGTCACGTTGCAGTTGCTG CTAGTTGAAGCTGTGACCAAGAGCTCCTGTTGCTTCTTCCTGGGCAGGCT GTTTGTGCCTGTTCGCTACACATTTCCATGAACTGACGGCATTGGAGCAC GACAAAGAAAAGAAAGGCGTCCAAAACCTGCACGTCATGGCCGAGGCAGA CCTCGAGTCAAACAAGCTCACTATGCTTTACAAGGTAAGGCGAGCAGCAT TGTTTAGTCAACGCAGAAGGATCACTTTCATGTATTTATTGTTCCTCAAT ATTATAATTTGGGGTAATGTTGATTGATGATATGGAACAGTCGAAAACAA CCGCTCATAGAAAAGCCCATCAGATTGTTATACGCCTCTTGTTGGACGCT TATTCATCTCGTATTTCGACCAGGTTACGCGAGGTTCTTGCGATCGAAGT TTTGGGATTCACGTAGCTCGGATTGCCAACTTCCCTGCCCATGTCGTGGA AGAGGCTGAACGGCTTGCTGCTGCGCTCGAAAAGGGCGAAGACCTTAACC TTCCCGCGCTCGAAAGCGATGTGGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59188:142..2117+

>mRNA_H-elongata_contig59188.13430.1 ID=mRNA_H-elongata_contig59188.13430.1|Name=mRNA_H-elongata_contig59188.13430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig59188:142..2117+ (Himanthalia elongata Himel1 dioecious)
ATGGTTTCGGAGATCGATGTCCTTGTGGCGTTAGCGGTGTGCGCACACAC
GTGGGATTGGCACCGACCACAGCTACTACCCGTAGGAAGCCAAACCGTTA
AGATTAAGATGGTTTCGGAGATCGATGTCCTTGTGGCGTTAGCGGTGTGC
GCACACACGTGGGATTGGCACCGACCACAGCTACTACCCGTAGGAAGCCA
AACCGTTAAGATTAAGGGACTTCGTCATCCAAGCGTCGAGGCTTCTCGGG
GATCCAGCAACTTCATCCCCAATGATATCGAGATGGCAAACGACAGTCGC
TTGGCAATTGTAACCGGGACTTCGTCATCCAAGCGTCGAGGCTTCTCGGG
GATCCAGCAACTTCATCCCCAATGATATCGAGATGGCAAACGACAGTCGC
TTGGCAATTGTAACCGGCCCAAATATGGCAGGCAAGAGCACTTTCATACG
ATCTGTGGGAATCGCTTGTCTGTTGGCTCAAATAGGAAGCTTTGTTCCCG
CCGCTGAGGCTACAATGGTGGTCGTCGATCGAATCTGCGCCAGGCCCAAA
TATGGCAGGCAAGAGCACTTTCATACGATCTGTGGGAATCGCTTGTCTGT
TGGCTCAAATAGGAAGCTTTGTTCCCGCCGCTGAGGCTACAATGGTGGTC
GTCGATCGAATCTGCGCCAGGATCGGTGCATCGGACAACCAACTGCGGGG
GGTTTCTACCTTTATGGCGGAGATGTTGGAGACAGTGGCAATCTTGCGAA
GGGTTGACAGGATCGGTGCATCGGACAACCAACTGCGGGGGGTTTCTACC
TTTATGGCGGAGATGTTGGAGACAGTGGCAATCTTGCGAAGGGTTGACAG
ACGCTCGTTGGTGATCGTGGATGAGCTAGGCAGGGGAACGTCGACGTGTG
ACGGTTTCGGGATTGCGTGGGCTGTTGCGGACAGGCTTATGTCCTCTGAC
GCTCGTTGGTGATCGTGGATGAGCTAGGCAGGGGAACGTCGACGTGTGAC
GGTTTCGGGATTGCGTGGGCTGTTGCGGACAGGCTTATGTCCTCTGGCTG
TTTGTGCCTGTTCGCTACACATTTCCATGAACTGACGGCATTGGAGCACG
ACAAAGAAAAGAAAGGCGTCCAAAACCTGCACGTCATGGCCGAGGCAGAC
CTCGAGTCAAACAAGCTCACTATGCTTTACAAGGCTGTTTGTGCCTGTTC
GCTACACATTTCCATGAACTGACGGCATTGGAGCACGACAAAGAAAAGAA
AGGCGTCCAAAACCTGCACGTCATGGCCGAGGCAGACCTCGAGTCAAACA
AGCTCACTATGCTTTACAAGGTTACGCGAGGTTCTTGCGATCGAAGTTTT
GGGATTCACGTAGCTCGGATTGCCAACTTCCCTGCCCATGTCGTGGAAGA
GGCTGAACGGCTTGCTGCTGCGCTCGAAAAGGGCGAAGACCTTAACCTTC
CCGCGCTCGAAAGCGATGTGGGCGTTACGCGAGGTTCTTGCGATCGAAGT
TTTGGGATTCACGTAGCTCGGATTGCCAACTTCCCTGCCCATGTCGTGGA
AGAGGCTGAACGGCTTGCTGCTGCGCTCGAAAAGGGCGAAGACCTTAACC
TTCCCGCGCTCGAAAGCGATGTGGGC
back to top