mRNA_H-elongata_contig59188.13430.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A6H5JCL8_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCL8_9PHAE) HSP 1 Score: 429 bits (1104), Expect = 3.270e-143 Identity = 216/275 (78.55%), Postives = 238/275 (86.55%), Query Frame = 1
Query: 1 SRRQMVSEIDVLVALAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSSGCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNLPALESDVG 825
S ++V+E+DVL++L VC H WDW RP+LLPVGSQT+ IKGLRHPSVEA+RG+ FIPNDI++ NDSR+ IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPA EA M V+DRICAR+GASDNQLRGVSTFMAEMLET AILR+ +R+SLVIVDELGRGTSTCDGFGIAWAVADRL+SSG LCLFATHFHELTA+E +K KGVQNLHV AEAD SNKLTMLYKV +GSCDRSFGIHVARIANFP HVV EAE LA LE GE L A SD G
Sbjct: 482 SAAKIVAELDVLLSLCVCVHLWDWVRPRLLPVGSQTIDIKGLRHPSVEAARGAGLFIPNDIKLGNDSRMTIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAEEAVMTVIDRICARVGASDNQLRGVSTFMAEMLETTAILRKANRQSLVIVDELGRGTSTCDGFGIAWAVADRLISSGALCLFATHFHELTAIEQEKGGKGVQNLHVTAEADSASNKLTMLYKVMQGSCDRSFGIHVARIANFPGHVVSEAETLARCLENGEPLIGRANSSDNG 756
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A1D2A1F4_AUXPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1F4_AUXPR) HSP 1 Score: 263 bits (673), Expect = 9.590e-80 Identity = 149/260 (57.31%), Postives = 181/260 (69.62%), Query Frame = 1
Query: 7 RQMVSEIDVLVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAN-DSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAA 774
R +++E+DVLVA A A T + RP LLP V++ G RHP VE G +FIPND M +S I+TGPNM GKSTFIR VGI+ LLAQ+GS+VP +A++ V D I AR+GA D+Q RGVSTFMAEMLE+ AIL+ SLVI+DELGRGTST DG G+AWA+++ LM+ GC LFATHFHELTAL + GV+NLHV A D S LTMLY+V GSCD+SFGIHVA A FP +VE A + AAA
Sbjct: 384 RSVLAELDVLVAFADVAVTAPRPYVRPSLLPADGGRVELVGCRHPCVELQEGV-DFIPNDCVMQRGESWFQIITGPNMGGKSTFIRQVGISVLLAQVGSWVPCTQASIAVRDAIFARVGAGDSQARGVSTFMAEMLESAAILKGATPASLVIIDELGRGTSTWDGMGLAWAISEHLMNGIGCPTLFATHFHELTAL---RGAGGVKNLHVGAAIDHTSGALTMLYQVEEGSCDKSFGIHVAEFARFPPAIVEAARKAAAA 639
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A834CYR8_JUGRE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A834CYR8_JUGRE) HSP 1 Score: 258 bits (658), Expect = 1.160e-78 Identity = 145/268 (54.10%), Postives = 180/268 (67.16%), Query Frame = 1
Query: 13 MVSEIDVLVALA--VCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAND-SRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHD--------KEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALE 780
M+SE+DVL++ A C+ + RP ++P + ++G RHP VEA + NFIPND ++ S I+TGPNM GKSTFIR VG+ L+AQ+GSFVP +A++ V D I AR+GA D QLRGVSTFM EMLET +IL+ +SL+I+DELGRGTST DGFG+AWA+ + L+ LFATHFHELTAL H+ K+ GV N HV A D S KLTMLYKV G+CD+SFGIHVA ANFPA VV A AA LE
Sbjct: 238 MLSELDVLLSFADLACSCPTPYTRPDIIPSDEGDIVLEGSRHPCVEA-QDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCVKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHESPDHGPHKKQTVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEFANFPASVVALAREKAAELE 504
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A5J4Y3N7_9CHLO (DNA mismatch repair n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3N7_9CHLO) HSP 1 Score: 265 bits (677), Expect = 1.250e-78 Identity = 155/271 (57.20%), Postives = 187/271 (69.00%), Query Frame = 1
Query: 13 MVSEIDVLVA---LAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAN-DSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNLPAL 810
+V+E+DVL+ +AV A T + RPQ+LP +K+ G RHP VEA G +FI ND M +S I+TGPNM GKST+IR VG+ L+AQ+G FVP EA + + D I AR+GA D QLRGVSTFMAEMLET AIL+ RSLVI+DELGRGTST DGFG+AWA+++ LM S GC LFATHFHELTAL K GV NLHV D S KLTMLY+V+ G+CD+SFGIHVA ANFP VV+ A+ AA LE D + P L
Sbjct: 606 LVAEMDVLLGFAEVAVNAPT-PYVRPQMLPPDDGQLKLVGCRHPCVEAQEGV-DFIKNDCCMQRGESWFQIITGPNMGGKSTYIRQVGVNVLMAQVGCFVPCDEACIAIRDCIFARVGAGDCQLRGVSTFMAEMLETAAILKGATSRSLVIIDELGRGTSTYDGFGLAWAISEHLMESIGCTTLFATHFHELTAL---KGPVGVANLHVETAIDAASGKLTMLYQVSPGACDQSFGIHVAEFANFPPEVVQLAKERAAELE---DFSTPML 868
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A1D2A3J8_AUXPR (DNA_MISMATCH_REPAIR_2 domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3J8_AUXPR) HSP 1 Score: 263 bits (673), Expect = 3.260e-78 Identity = 149/260 (57.31%), Postives = 181/260 (69.62%), Query Frame = 1
Query: 7 RQMVSEIDVLVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAN-DSRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAA 774
R +++E+DVLVA A A T + RP LLP V++ G RHP VE G +FIPND M +S I+TGPNM GKSTFIR VGI+ LLAQ+GS+VP +A++ V D I AR+GA D+Q RGVSTFMAEMLE+ AIL+ SLVI+DELGRGTST DG G+AWA+++ LM+ GC LFATHFHELTAL + GV+NLHV A D S LTMLY+V GSCD+SFGIHVA A FP +VE A + AAA
Sbjct: 597 RSVLAELDVLVAFADVAVTAPRPYVRPSLLPADGGRVELVGCRHPCVELQEGV-DFIPNDCVMQRGESWFQIITGPNMGGKSTFIRQVGISVLLAQVGSWVPCTQASIAVRDAIFARVGAGDSQARGVSTFMAEMLESAAILKGATPASLVIIDELGRGTSTWDGMGLAWAISEHLMNGIGCPTLFATHFHELTAL---RGAGGVKNLHVGAAIDHTSGALTMLYQVEEGSCDKSFGIHVAEFARFPPAIVEAARKAAAA 852
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A8B9RFA9_ASTMX (DNA mismatch repair protein Msh2 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9RFA9_ASTMX) HSP 1 Score: 248 bits (632), Expect = 1.060e-77 Identity = 137/259 (52.90%), Postives = 180/259 (69.50%), Query Frame = 1
Query: 34 LVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLA-IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLN 798
+V+ AV +H + RP++L GS + +KG RHP VEA + FIPND+ A ++ I+TGPNM GKST+IR VG+ L+AQIG FVP EA + VVD + AR+GA D+Q++GVSTFMAEMLET AILR SL+I+DELGRGTST DGFG+AWA+++ + + CLFATHFHELTAL +++ V NLHV A + LTMLY+V +G CD+SFGIHVA +ANFP HV+ A A LE+ +D++
Sbjct: 2 VVSFAVVSHAAPVPYVRPRILEKGSGRLILKGSRHPCVEAQDDVA-FIPNDVTFARGEQMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALA--QQEPTVCNLHVTALTT--DSTLTMLYRVKKGVCDQSFGIHVAELANFPKHVIANAREKALELEEFQDIS 255
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: I0YSX7_COCSC (DNA mismatch repair protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YSX7_COCSC) HSP 1 Score: 262 bits (669), Expect = 1.070e-77 Identity = 153/272 (56.25%), Postives = 182/272 (66.91%), Query Frame = 1
Query: 13 MVSEIDVLVA---LAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMAND-SRLAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNLPALE 813
MV+E+D+L LAVCA + RP +LP S +K+ RHP VEA G FI ND M S ++TGPNMAGKST+IR VG+A L+AQ+G FV A + V D I AR+GA D QLRG+STFMAEMLET AIL+ +SLVI+DELGRGTST DGFG+AWA+++ LM GC LFATHFHELTAL+ GV N HV D S KLTMLY+VT G+CD+SFGIHVA A FP VVE A+R AA LE D + PA E
Sbjct: 605 MVAEMDLLAGFAELAVCAPL-PYVRPTMLPADSSELKLTACRHPCVEAQDGVE-FIANDCHMERGKSWFQVITGPNMAGKSTYIRQVGVAVLMAQVGCFVACEHARIAVRDCIFARVGAGDCQLRGISTFMAEMLETAAILKGASAKSLVIIDELGRGTSTYDGFGLAWAISEHLMQEIGCPTLFATHFHELTALQGPV---GVANKHVETAIDEASGKLTMLYQVTEGACDQSFGIHVAEFARFPPEVVELAKRKAAELE---DFSAPAQE 868
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A8J1TAS5_OWEFU (Ofus.G021027 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TAS5_OWEFU) HSP 1 Score: 251 bits (641), Expect = 1.160e-77 Identity = 142/267 (53.18%), Postives = 189/267 (70.79%), Query Frame = 1
Query: 13 MVSEIDVLVALA-VCAHT-WDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLA-IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALEKGEDLNL 801
++S++DVLV+LA V A+ + RP+LL GS +K++ RHP +E + +IPNDIE + D L I+TGPNM GKST+IRS G+ L+AQIG FVP + A + +VD I AR+GA D+ ++GVSTFMAEMLET +ILR SLVI+DELGRGTST DGFG+AWA+++ + + C CLFATHFHELTAL E V NLHV A ++ LT+LYKV G CD+SFGIHVA +A+FP+HV++ A+ A+ LE ++ NL
Sbjct: 110 VISQLDVLVSLAHVSANAPIPYIRPKLLKKGSGILKLEEARHPCLEMQDDVA-YIPNDIEFSKDGHLFHIITGPNMGGKSTYIRSAGVIVLMAQIGCFVPCSSAEISIVDCILARVGAGDSTVKGVSTFMAEMLETASILRCATEESLVIIDELGRGTSTYDGFGLAWAISEYIATKMKCFCLFATHFHELTALAG--EVPTVNNLHVTALTT--NDTLTLLYKVKPGVCDQSFGIHVAELAHFPSHVIQFAKNKASELEDYQNSNL 371
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A6P7VVE2_IXOSC (DNA mismatch repair protein Msh2 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7VVE2_IXOSC) HSP 1 Score: 248 bits (632), Expect = 4.970e-77 Identity = 137/260 (52.69%), Postives = 180/260 (69.23%), Query Frame = 1
Query: 13 MVSEIDVLVALAVCAHTWD--WHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSRLA-IVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSSG-CLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALE 780
++S +DVLV LAV A + + RP++L GS +K+ GLRH VE S+ + FIPNDIEM S I+TGPNM GKST+IRSV +A L+AQ+GSFVP A + +VD + RIGA D QL+GVSTFMAEMLE+ ILR SLV++DELGRGTST DGFG+AWA+++ L CLFATHFHELT L +E V+N+HV A D+ + T+LYKV G C++SFG+ VA + +FP HV+++A ++ A LE
Sbjct: 118 VISHLDVLVGLAVAAASASKPYVRPKILEKGSGILKMTGLRHACVE-SQDNVMFIPNDIEMKKGSSSCYIITGPNMGGKSTYIRSVALAVLMAQVGSFVPCDSAELSLVDAVLTRIGAGDQQLKGVSTFMAEMLESAHILRNATTDSLVVIDELGRGTSTYDGFGLAWAISEHLSKEADAYCLFATHFHELTELA--QELPCVRNVHVTA--DVREDSFTLLYKVKPGVCNKSFGVEVAELTHFPEHVIKDARQVLAQLE 372
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Match: A0A3M7P2Z6_BRAPC (DNA mismatch repair Msh2-like (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P2Z6_BRAPC) HSP 1 Score: 259 bits (661), Expect = 1.270e-76 Identity = 144/260 (55.38%), Postives = 182/260 (70.00%), Query Frame = 1
Query: 13 MVSEIDVLVALAVCAHTW--DWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSNFIPNDIEMANDSR-LAIVTGPNMAGKSTFIRSVGIACLLAQIGSFVPAAEATMVVVDRICARIGASDNQLRGVSTFMAEMLETVAILRRVDRRSLVIVDELGRGTSTCDGFGIAWAVADRLMSS-GCLCLFATHFHELTALEHDKEKKGVQNLHVMAEADLESNKLTMLYKVTRGSCDRSFGIHVARIANFPAHVVEEAERLAAALE 780
+VSE+D+ V+ ++ A + D+ RP+L P+G+ +++K RHP +E G NFIPND E D + I+TGPNM GKST+IR +G+ L+AQIGSFVPA+ A + + D I ARIGA+D Q +G+STFMAEMLET IL+ SLVI+DELGRGTST DGFG+AWA++D L+ C LFATHFHELTAL +E K V N HV A ES LT+LYKV G CD+SFGIHVAR+ANFP HV+E A A LE
Sbjct: 593 LVSELDIYVSFSLVAMSSQADYARPKLHPIGTGILRLKDSRHPCLELQEGI-NFIPNDCEFVKDEKNFCIITGPNMGGKSTYIRQIGVLVLMAQIGSFVPASSAEISIFDCILARIGANDCQNKGISTFMAEMLETSFILKTATSNSLVIIDELGRGTSTYDGFGLAWAISDYLVKKVKCFTLFATHFHELTALS--EEIKTVFNSHVSAMTSDES--LTLLYKVKPGVCDQSFGIHVARLANFPEHVIEYAREKAKYLE 847 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59188.13430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59188.13430.1 >prot_H-elongata_contig59188.13430.1 ID=prot_H-elongata_contig59188.13430.1|Name=mRNA_H-elongata_contig59188.13430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp MVSEIDVLVALAVCAHTWDWHRPQLLPVGSQTVKIKGLRHPSVEASRGSSback to top mRNA from alignment at H-elongata_contig59188:142..2117+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59188.13430.1 ID=mRNA_H-elongata_contig59188.13430.1|Name=mRNA_H-elongata_contig59188.13430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1976bp|location=Sequence derived from alignment at H-elongata_contig59188:142..2117+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59188:142..2117+ >mRNA_H-elongata_contig59188.13430.1 ID=mRNA_H-elongata_contig59188.13430.1|Name=mRNA_H-elongata_contig59188.13430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig59188:142..2117+ (Himanthalia elongata Himel1 dioecious)back to top |