mRNA_H-elongata_contig5917.13429.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5917.13429.1
Unique NamemRNA_H-elongata_contig5917.13429.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5917.13429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5917contigH-elongata_contig5917:5930..9436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1327
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5917.13429.1prot_H-elongata_contig5917.13429.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5917 8633..9358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.1282742-UTR-H-elongata_contig5917:5929..59951622930960.1282742-UTR-H-elongata_contig5917:5929..5995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 5930..5995 -
1691679641.1055489-UTR-H-elongata_contig5917:5929..59951691679641.1055489-UTR-H-elongata_contig5917:5929..5995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 5930..5995 -
1622930960.1450531-UTR-H-elongata_contig5917:6575..67041622930960.1450531-UTR-H-elongata_contig5917:6575..6704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 6576..6704 -
1691679641.1132843-UTR-H-elongata_contig5917:6575..67041691679641.1132843-UTR-H-elongata_contig5917:6575..6704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 6576..6704 -
1622930960.1628172-UTR-H-elongata_contig5917:8304..86321622930960.1628172-UTR-H-elongata_contig5917:8304..8632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 8305..8632 -
1691679641.1233695-UTR-H-elongata_contig5917:8304..86321691679641.1233695-UTR-H-elongata_contig5917:8304..8632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 8305..8632 -
1622930960.1994307-UTR-H-elongata_contig5917:9358..94361622930960.1994307-UTR-H-elongata_contig5917:9358..9436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 9359..9436 -
1691679641.1391768-UTR-H-elongata_contig5917:9358..94361691679641.1391768-UTR-H-elongata_contig5917:9358..9436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 9359..9436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.1803458-CDS-H-elongata_contig5917:8632..93581622930960.1803458-CDS-H-elongata_contig5917:8632..9358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5917 8633..9358 -
1691679641.131387-CDS-H-elongata_contig5917:8632..93581691679641.131387-CDS-H-elongata_contig5917:8632..9358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5917 8633..9358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5917.13429.1

>prot_H-elongata_contig5917.13429.1 ID=prot_H-elongata_contig5917.13429.1|Name=mRNA_H-elongata_contig5917.13429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
MDITMKSGAFLCNDHITKGLLIDVTVANPMDTCHLVSSTRWGGNALRLAK
KCKIDTYRGLFDPATYTVQTLAFSICGGVGEDTVEFYLTAATHRVLKRWY
LESNQLAAARGQETTNLQRHSFFVLNRAISARTREAMARAVGRPAMAPAD
SLALTVSKGTRSCAIAAVVAAEASAAAAAVVVEEEEDLKEDIFVVADAAT
GATEDGFEGSLALPVQTEDEEPIAPAAAARSAEATMGHAGA*
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mRNA from alignment at H-elongata_contig5917:5930..9436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5917.13429.1 ID=mRNA_H-elongata_contig5917.13429.1|Name=mRNA_H-elongata_contig5917.13429.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3507bp|location=Sequence derived from alignment at H-elongata_contig5917:5930..9436- (Himanthalia elongata Himel1 dioecious)
ACGGTGAGCAAGGTTCTGCACGACTGCAGTGTCTCGCACCACATCGAGGA
TATCGCGCCGGTAGGAGGATCGCTCCGTATGGACATTACGATGAAGTCGG
GAGCCTTCCTCTGCAACGATCACATCACAAAGGGCCTTCTCATCGACGTC
ACGGTCGCCAACCCCATGGACACCTGTCATCTGGTCAGCTCCACCCGATG
GGGCGGTAACGCCCTCCGCTTGGCGAAGAAGTGCAAGATTGACACATACC
GAGGATTGTTTGATCCCGCTACCTACACCGTTCAAACTCTTGCGTTCTCC
ATCTGCGGTGGTGTCGGCGAAGACACTGTCGAATTCTACCTGACCGCCGC
CACCCACCGAGTGCTTAAGCGATGGTATCTGGAGAGCAATCAGTTAGCAG
CGGCACGGGGACAAGAGACGACAAACCTTCAGCGACATTCGTTCTTCGTC
CTGAACCGGGCGATTTCCGCAAGGACCCGCGAGGCTATGGCTCGAGCCGT
CGGTCGACCAGCCATGGCCCCAGCGGACAGCCTAGCTCTAACGGTGAGCA
AAGGAACAAGGTCTTGCGCCATCGCAGCGGTAGTGGCGGCGGAGGCATCT
GCAGCGGCTGCGGCGGTGGTGGTGGAGGAGGAGGAGGATCTCAAAGAGGA
TATCTTCGTGGTGGCTGACGCGGCGACAGGCGCGACAGAAGATGGATTTG
AAGGAAGCCTCGCGCTACCGGTACAGACCGAAGACGAGGAACCGATCGCA
CCGGCAGCAGCCGCACGATCAGCGGAAGCGACGATGGGGCATGCAGGGGC
TTGAGCGCGCGCGGGTGCAGTGACCACGATGCCGGACCTGGCCGCCGCTG
TCGCGACAACGAAGGTTGAAGGAATTGAGGGGGGTGGATACACCGGTCAC
CAACCCCTTAGCGTTGAGGGAGGGGACAGGAGGGATCGAGGCGAGAGTAC
CCGCCACCACAGTGGTGAATGTGGTGGCTTTGGTAACGGCAGCAGCGATG
ATGACCGTCCCACAAACGGCAAGAATCCGCCAGATGGGAAACGGGACGGA
GGCCTCAACCAAGCTGGGGACAGAGGGGTCGGGGCCGTAACGGCATTTGA
AACGCCAACGCCCTCGGGTGTTGGGTCCAGAGGTGGGGCAGCGGGGGCAG
GAGGGAGAGTTGTAGCGGTAGTCCGGCGCGATTGCGTAATCAACGCGAGT
AGGATAGGTCAATGCAACGTCTCCAGGGATGATAGCTTCACATAAGGGGG
GAGTATTCGCAAACCGACGTGGCGCCCCCTTACGTGCCATACCGATTTGC
GCGGTTTAATGCAAAATGGTAAAAAGGAAAGCGTAAATTTCTCTCTGAAA
GCATCTGACACAACCAATAGTAATGCTTCATCCACCTCTAGAACTAGTAT
AATAATATATTAATAGTATGTACCAGAAACTCTTTCACAAGAAGGGATTT
AAAGGTTATTACGTTTAAAACAAAAGGTAATATGTGGTTATTGGTGAGGT
AAGTTGATTAGTCATCGGGGAGTTATTAATAATAGTATTGCTTCATTATA
GTACAGTATTAGATTAAGGATATTCAGCAGACTACAGTTACGGAAAAGAG
AGAAATAGAGGTACACAATTATTGGTCGATGGGGTTACCTGAATAGGCTG
CACCCGTTACTCAAGCTACCTTGAGGATGGATGGCTCAGTGTAAATGGAC
TCTCGGTGGTAAACGCCACCAGTACGGAATTGCGTTACCTGATGAAATCG
GGATTGGTCCAATGGCGGTTGACGGTAGAGATGGAAGCCGTCACGGAAAA
CGAGAGGATCCCTGGAGTACGCACCAGATTCATCTTGGGTTGGAATAATG
AGCAGGTTGACGCGGGACGGGACTGACTGCCAAACCTGTCTCGCAAGACC
AAATTATCAGGCGCAAAAGGGAAAATAAATTTCCTCTTTTTTATCAATTT
GCATTAGACCGCGAAAATCGGCATGACACGTAAGGGGGCGCCACGCCGGT
TTGCAAATACCTCCCCTTATGGAAACTATCCCTGAACTGTTCAGCTGATC
ACATGCAGGAGGTGTAACCAAATCCGGTAGAAAAAAACACCATGCGCAAG
GAAAAAACGTTGAAGTACTCTCCACTACAAAAGGAAACGGCAATGGTTCA
TAATAATACTACTCGGGAAAAGCGGACACACAAAAATCTCCAAAGAAAAA
GAAACACACAAAAAAGAGGACACACACAGTTGTTAACGAGTTGCATGTAG
CTGTCGGGACGCGGGCTTTTATCGGAGAACAATTGAACGAGGAGCCACGG
GTTCAATGAGAGCAAGCAAAACGACGAAAACGAAAGACCCCCCCCCCGTA
AAGCCAGAGAAAGGTAATAAGACATCGGCAAGCAAGAAAACGCCCGGAGG
TTAAGTTCGCGCCACTCATGGCTAATCAACTATGGCGAGCAAAATAGCAC
GAGCACGGTTGCTTTGGACTATCCTCTCCTTGGTCCTCCCCGTCACGTTT
GCATGCCGTAGTCCAGCCCTGATTTCTCTGTAACGATCCAATTCGTCATG
AAACGTTCCGCGCCTTGTCCGCCGTCTTGAGCCATATCCCTTCGTCCTGG
GCTGCAACCGTCCAATGGCCTTTGTTGATACCGAAAGCTTTGAGGTCTTC
CAGAAGACACCCCATCCAGTCGTTTTCCTGGTCCATTTGACAGTCTCGTG
TTGTCCATGCGCGCCACAAATCCCCTGAACAGGATCCGCCTCCTGCACAT
GATCGTCTCGATGCTCCCACTTCCCGTCTTCATTAGGGTGTCCAGATAGG
AGATCGGGCAATAGGTGCGATTGTTCTTCCGCCAAACAATTCAGCGAGTC
AAGAAACTGTGGTGAGCTCGGTATTTGACGAGGCTTTTATCTGATGACCA
CCCTCGTGATGCATGGTGCACGGAAGATGATAGGTGTGTCATAGTGGCTG
ACAAAGCTGGGATGGGCACACGAAAAACGAAAAACGCCAACGGAGAGAAG
GACGGCTAGAGTTCTCTTGTGGTAGTCTCTTGGAAGAATGTTGACTAAAT
CATCGCATTTTTTAGCTACCCTGCTTGGAGCAGATTTTCCAAGAGCCATC
TATATCACATGCTGCATTACATATCGTTATTCGTGTCACCCCCCCACCGT
CTGTTTTATTAATAGTTATGCACCTGTACTTGACAAGTATATAGATAGAT
AGGGTAAGGTTCTCTTAATTGGGGAGATATTTTCATTTTCGTTTGAGTGT
TCTTAATCTTCTCTGTTCAGCGAACCACAAGCGGGGTTGAGGATCGATCG
ACATACTGTAATGTACTGTGAAAACAACAGCATCAGAAATAACTACTGTA
CGGGATTGTTACTTCAAATACGCCGGGCGACCCATTTATTTTCCTTCCCT
TTCCTTTCCTTTCATTTGATGTTGTGTCGTGCCTCCGTCAGTTCTTGCTC
AGTGGGGAGTACATAGTACATGGATCACCATGGGGAATGGATCACTATGG
GGATATT
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Coding sequence (CDS) from alignment at H-elongata_contig5917:5930..9436-

>mRNA_H-elongata_contig5917.13429.1 ID=mRNA_H-elongata_contig5917.13429.1|Name=mRNA_H-elongata_contig5917.13429.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig5917:5930..9436- (Himanthalia elongata Himel1 dioecious)
ATGGACATTACGATGAAGTCGGGAGCCTTCCTCTGCAACGATCACATCAC
AAAGGGCCTTCTCATCGACGTCACGGTCGCCAACCCCATGGACACCTGTC
ATCTGGTCAGCTCCACCCGATGGGGCGGTAACGCCCTCCGCTTGGCGAAG
AAGTGCAAGATTGACACATACCGAGGATTGTTTGATCCCGCTACCTACAC
CGTTCAAACTCTTGCGTTCTCCATCTGCGGTGGTGTCGGCGAAGACACTG
TCGAATTCTACCTGACCGCCGCCACCCACCGAGTGCTTAAGCGATGGTAT
CTGGAGAGCAATCAGTTAGCAGCGGCACGGGGACAAGAGACGACAAACCT
TCAGCGACATTCGTTCTTCGTCCTGAACCGGGCGATTTCCGCAAGGACCC
GCGAGGCTATGGCTCGAGCCGTCGGTCGACCAGCCATGGCCCCAGCGGAC
AGCCTAGCTCTAACGGTGAGCAAAGGAACAAGGTCTTGCGCCATCGCAGC
GGTAGTGGCGGCGGAGGCATCTGCAGCGGCTGCGGCGGTGGTGGTGGAGG
AGGAGGAGGATCTCAAAGAGGATATCTTCGTGGTGGCTGACGCGGCGACA
GGCGCGACAGAAGATGGATTTGAAGGAAGCCTCGCGCTACCGGTACAGAC
CGAAGACGAGGAACCGATCGCACCGGCAGCAGCCGCACGATCAGCGGAAG
CGACGATGGGGCATGCAGGGGCTTGAATGGACATTACGATGAAGTCGGGA
GCCTTCCTCTGCAACGATCACATCACAAAGGGCCTTCTCATCGACGTCAC
GGTCGCCAACCCCATGGACACCTGTCATCTGGTCAGCTCCACCCGATGGG
GCGGTAACGCCCTCCGCTTGGCGAAGAAGTGCAAGATTGACACATACCGA
GGATTGTTTGATCCCGCTACCTACACCGTTCAAACTCTTGCGTTCTCCAT
CTGCGGTGGTGTCGGCGAAGACACTGTCGAATTCTACCTGACCGCCGCCA
CCCACCGAGTGCTTAAGCGATGGTATCTGGAGAGCAATCAGTTAGCAGCG
GCACGGGGACAAGAGACGACAAACCTTCAGCGACATTCGTTCTTCGTCCT
GAACCGGGCGATTTCCGCAAGGACCCGCGAGGCTATGGCTCGAGCCGTCG
GTCGACCAGCCATGGCCCCAGCGGACAGCCTAGCTCTAACGGTGAGCAAA
GGAACAAGGTCTTGCGCCATCGCAGCGGTAGTGGCGGCGGAGGCATCTGC
AGCGGCTGCGGCGGTGGTGGTGGAGGAGGAGGAGGATCTCAAAGAGGATA
TCTTCGTGGTGGCTGACGCGGCGACAGGCGCGACAGAAGATGGATTTGAA
GGAAGCCTCGCGCTACCGGTACAGACCGAAGACGAGGAACCGATCGCACC
GGCAGCAGCCGCACGATCAGCGGAAGCGACGATGGGGCATGCAGGGGCTT
GA
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