mRNA_H-elongata_contig5917.13428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5917.13428.1
Unique NamemRNA_H-elongata_contig5917.13428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 5.720e-85
Identity = 164/274 (59.85%), Postives = 172/274 (62.77%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEI------IVQEAFLSISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM-------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSV 603
            V+TSSLKC SETPNKRNKLTMIAE LENGLAVDIESGEVSIEW RKTLG+FFQ+KYDWDLL  R I A G E DG NILVD TLPSEV ++ +      IVQ       CREGPLCDE IRNAKFKILDAVIAAEPIHRGGGQV IPTAR VAYSAFLM                                                                   QGQAFCTQVF+HW+IVPGDPLDRNIILHPLEPSPPQH A EFMV   V
Sbjct:  664 VETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRDSIVQG--FQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV-IPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVRCGV 934
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BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S2V928_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V928_9STRA)

HSP 1 Score: 257 bits (656), Expect = 8.210e-82
Identity = 152/294 (51.70%), Postives = 172/294 (58.50%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSES------EIIVQEAFLSISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TSSLKC +ETPN+RNKLT+I E LE GLA DIE+GEV I+W RKTLG+FFQ+KYDWDLL  R I A G +  G NILVD TLPSEV ++      E I+Q       CREGPLCDE IRN KFKILDAV+A+EPIHRGGGQV IPTAR VAYSAFLM                                                                     QGQAFCTQVF+HW+IVPGDPLDR+I+LHPLEPSPP H A EFMV      RRK +    S+   FD
Sbjct:   60 VETSSLKCFAETPNRRNKLTVICEPLEQGLAADIETGEVRIDWDRKTLGEFFQSKYDWDLLAARSIWAFGPDAKGPNILVDDTLPSEVDKTLLSTIRETIIQG--FQWGCREGPLCDEPIRNCKFKILDAVVASEPIHRGGGQV-IPTARRVAYSAFLMATPRLMEPVLQLQIQSPVDCVSALYPVLARRRGHVVQDAPKPGAPFYTVKAFLPAIESFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRSIVLHPLEPSPPPHLAREFMVKTR---RRKGLSEDVSINKFFD 347
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BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S2CQL7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQL7_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.710e-76
Identity = 149/292 (51.03%), Postives = 169/292 (57.88%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEII-VQEAFLS---ISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TS+LKC +ETPNKRNKLTMIAE LE GLA DIE GEVSI+W RK LG+FFQ+KYDWDLL  R + A G +IDG NILVD TLPSEV +  +  VQE+ +      CREGPLCDE IRN KFKILDA IA EPIHRGGGQ+ IPTAR VAYSAFLM                                                                     QGQA C Q F+HW+IVPGDPLDR+I+LHPLEPSPP   A +FMV      RRK +    S+   FD
Sbjct:  250 VETSALKCFAETPNKRNKLTMIAEPLEEGLAEDIERGEVSIDWDRKQLGEFFQSKYDWDLLAARSVWAFGPDIDGPNILVDDTLPSEVDKKLLKQVQESVVQGFQWGCREGPLCDEPIRNTKFKILDATIAPEPIHRGGGQI-IPTARRVAYSAFLMATPRLMEPVMELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTIKAYLPAIDSFGFETDLRAFTQGQAMCFQTFDHWSIVPGDPLDRSIVLHPLEPSPPPQLARDFMVKTR---RRKGLSEDVSIQKFFD 537
[Close]
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.100e-74
Identity = 147/293 (50.17%), Postives = 171/293 (58.36%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEII-----VQEAFLSISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            VDTSSLKC SETPNK+NKLTMIAE L+ GLA DIE G VSI+W RKTLG FFQ+KY+WDLL +R + A G +  G N+LVD TLPSEV  + +      V + F    CREGPLCDE +RN KFKILDAV+A+E IHRGGGQ+ IPT+R VAYSAFL+                                                                     QGQAFCTQVF+HW+IVPGDPLDRNI+LHPLEPSPPQH A +FMV      RRK +    S+   FD
Sbjct:  667 VDTSSLKCFSETPNKKNKLTMIAEPLDEGLAQDIEIGAVSIDWDRKTLGDFFQSKYNWDLLASRSVWAFGPDAMGPNVLVDDTLPSEVDRASLASIKSSVIQGF-QWGCREGPLCDEPLRNTKFKILDAVVASEAIHRGGGQI-IPTSRRVAYSAFLLASPRLMEPVYAVEIQAPADVVGALYPVLQRRRGHVVQDSPKPGAPFYTVRAYIPVIDSFGFETDLRSYTQGQAFCTQVFDHWSIVPGDPLDRNIVLHPLEPSPPQHLARDFMVKTR---RRKGLSEDVSINKFFD 954
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BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: UPI001FA412BA (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA412BA)

HSP 1 Score: 233 bits (593), Expect = 2.410e-72
Identity = 143/294 (48.64%), Postives = 161/294 (54.76%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEV------SESEIIVQEAFLSISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TSSLKC +ETPNKRNKLTMIAE LE GLA DIE+G V + W RK LG+FFQ KYDWDLL  R I A G +  G NILVD TLPSEV      S  + IVQ        REGPLC+E IRN KFKILDAVIA EP+HRGGGQ+ IPTAR VAYSAFLM                                                                     QGQAFC QVF+HW IVPGDPLD++I++ PLEP P  H A EFM+      RRK +    S+   FD
Sbjct:   60 VETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAGAVCVTWDRKRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKHLLSSVKDSIVQG--FQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQI-IPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTR---RRKGLSEDVSINKFFD 347
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BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S3XMC3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC3_HETAK)

HSP 1 Score: 233 bits (594), Expect = 1.500e-71
Identity = 139/291 (47.77%), Postives = 163/291 (56.01%), Query Frame = 1 
Query:    4 DTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEII-VQEAFLS---ISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            +TSSLKC +ETPN+RN+LT++ E LE+GLA DIE GEV I W R+ LG+FFQA+YDWDLL  R I A G E DG N+LVD TLPSEV ++ +  V+E+ +      CREGPLCDE +RN KFKILDA IA+EPIHRGGGQV IPTAR  AYSAFLM                                                                     QGQA     F+HW  VPGDPLDR+I+LHPLEPSPP H A EFMV      RRK +    S+   FD
Sbjct:  137 ETSSLKCFAETPNRRNRLTVVCEPLEDGLAEDIERGEVQIGWDRRRLGRFFQARYDWDLLAARSIWAFGPEADGPNVLVDDTLPSEVDKTLLTSVRESVIQGFQWGCREGPLCDEPVRNCKFKILDASIASEPIHRGGGQV-IPTARRAAYSAFLMAAPRLMEPVLGVQIQAPADAVQAIYPVLARRRGHVVQDAPKPGAPFYTVKAFLPAIESFGFETDLRAYTQGQAMAFSAFDHWATVPGDPLDRSIVLHPLEPSPPPHLAREFMVKTR---RRKGLSEDVSINKFFD 423
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BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: K7EP67_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component (Fragment) n=3 Tax=Hominidae TaxID=9604 RepID=K7EP67_HUMAN)

HSP 1 Score: 226 bits (575), Expect = 1.770e-71
Identity = 129/225 (57.33%), Postives = 149/225 (66.22%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSES------EIIVQEAFLSISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLMQGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TSSLKC +ETPNK+NK+TMIAE LE GLA DIE+  V I W RK LG+FFQ KYDWDLL  R I A G +  G NILVD TLPSEV ++      + IVQ        REGPLCDELIRN KFKILDAV+A EP+HRGGGQ+ IPTAR V YSAFLM              IVPGDPLD++I++ PLEP P  H A EFM+      RRK +    S+   FD
Sbjct:    1 VETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQG--FQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQI-IPTARRVVYSAFLM--------------IVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTR---RRKGLSEDVSISKFFD 205
[Close]
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A4Y2N9G0_ARAVE (U5 small nuclear ribonucleoprotein component n=7 Tax=Bilateria TaxID=33213 RepID=A0A4Y2N9G0_ARAVE)

HSP 1 Score: 230 bits (587), Expect = 1.930e-71
Identity = 139/292 (47.60%), Postives = 164/292 (56.16%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEI-IVQEAFLS---ISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TSSLKC +ETPNK+NKLTMIAE LE GLA DIE+  V I W RK LG+FFQ KYDWDLL  R I A G +  G NILVD TLPSEV ++ + +V+++ +     + REGPLC+E IRN KFKILDAVIA EPIHRGGGQ+ IPTAR VAYSAFLM                                                                     QGQAFC  VF+HW IVPGDPLD++I++ PLEP P  H A EFM+      RRK +    S+   FD
Sbjct:   57 VETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENEVVQINWNRKRLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKNLLSMVKDSIVQGFQWATREGPLCEEPIRNVKFKILDAVIAGEPIHRGGGQI-IPTARRVAYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTR---RRKGLSEDVSINKFFD 344
[Close]
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S2WR47_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR47_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.470e-70
Identity = 140/292 (47.95%), Postives = 165/292 (56.51%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEII-VQEAFLS---ISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TS+LKC +ETPNKRNKLTMIAE LE+GLA DIE GEV + W RK LG+FFQ KYDWDLL  R I A G +  G NILVD TLPSEV++  +  V+++ +      CREGPLCDE IRN KFKIL+A IA EPIHRGGGQ+ IPTAR VAYSAFLM                                                                     QGQA C Q F+HW+IV GDPLDR+I+LHPLEP+ PQ  A +FM+      RRK +    S+   FD
Sbjct:  131 VETSALKCFAETPNKRNKLTMIAEPLEDGLAEDIERGEVDMGWDRKQLGEFFQTKYDWDLLAARSIWAFGPDTRGPNILVDDTLPSEVNKKLLAQVRDSVVQGFQWGCREGPLCDEPIRNTKFKILEATIAQEPIHRGGGQI-IPTARRVAYSAFLMATPRLMEPVFELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTMKAFLPAIDSFGFETDLRAFTQGQAMCFQSFDHWSIVDGDPLDRSIVLHPLEPALPQQLARDFMIKTR---RRKGLSEDVSISKFFD 418
[Close]
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A812LP25_SYMMI (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812LP25_SYMMI)

HSP 1 Score: 239 bits (611), Expect = 5.370e-70
Identity = 139/292 (47.60%), Postives = 170/292 (58.22%), Query Frame = 1 
Query:    1 VDTSSLKCLSETPNKRNKLTMIAESLENGLAVDIESGEVSIEWGRKTLGKFFQAKYDWDLLTNRFI*ALGAEIDGSNILVDGTLPSEVSESEII-VQEAFLS---ISCREGPLCDELIRNAKFKILDAVIAAEPIHRGGGQVLIPTARLVAYSAFLM---------------------------------------------------------------------QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 657
            V+TSS+KC SETPNKRNK+TM+AE LE GLA DIE+G V I+W +K++G+FFQ+KY+WDLL+ R I A G +  G NIL+D TLPSEV ++ +  ++E+ +      CREGPLCDE +RNAKFKILDAVIA EPIHRGGGQ+ IPTAR  AYSAFLM                                                                     QGQAFC Q+F+HW +V GDPLDRN+ILHPLEPSPP   A +FMV      RRK +    S+   FD
Sbjct:  674 VETSSIKCFSETPNKRNKITMLAEPLEEGLAADIEAGNVCIDWNKKSIGEFFQSKYNWDLLSARSIWAFGPDDCGPNILIDDTLPSEVDKTAMASIRESVVQGFKWGCREGPLCDEPVRNAKFKILDAVIAGEPIHRGGGQI-IPTARRAAYSAFLMATPRLMEPVYLVEIQAPADCVQAVYPVLARRRGHVVQDAPKPGAPFYTVKAFIPVMDSFGFETDLRSYTQGQAFCQQIFDHWAVVTGDPLDRNVILHPLEPSPPGALARDFMVKTR---RRKGLSEDVSINKYFD 961
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE5.720e-8559.85Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2V928_9STRA8.210e-8251.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CQL7_9STRA2.710e-7651.03Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z8L8_9STRA2.100e-7450.17GTPase of the U5 snRNP particle n=1 Tax=Tribonema ... [more]
UPI001FA412BA2.410e-7248.64Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A7S3XMC3_HETAK1.500e-7147.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K7EP67_HUMAN1.770e-7157.33116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A4Y2N9G0_ARAVE1.930e-7147.60U5 small nuclear ribonucleoprotein component n=7 T... [more]
A0A7S2WR47_9STRA1.470e-7047.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812LP25_SYMMI5.370e-7047.60116 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5917contigH-elongata_contig5917:446..2593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue8.4e-17
Seed eggNOG ortholog2880.D8LIZ9
Preferred nameEF-TU
KEGG koko:K12852
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000003,GO:0000166,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0001672,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010154,GO:0010467,GO:0010847,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030312,GO:0030532,GO:0031445,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045694,GO:0046483,GO:0046540,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0055044,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0097525,GO:0097526,GO:0099402,GO:0120114,GO:1901265,GO:1901360,GO:1901363,GO:1902275,GO:1902494,GO:1902802,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0468@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size657
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5917.13428.1prot_H-elongata_contig5917.13428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5917 2021..2593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.243681-UTR-H-elongata_contig5917:445..5591622930960.243681-UTR-H-elongata_contig5917:445..559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 446..559 +
1691679641.1476023-UTR-H-elongata_contig5917:445..5591691679641.1476023-UTR-H-elongata_contig5917:445..559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 446..559 +
1622930960.2600124-UTR-H-elongata_contig5917:1005..11971622930960.2600124-UTR-H-elongata_contig5917:1005..1197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 1006..1197 +
1691679641.1575181-UTR-H-elongata_contig5917:1005..11971691679641.1575181-UTR-H-elongata_contig5917:1005..1197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 1006..1197 +
1622930960.2779026-UTR-H-elongata_contig5917:1557..16661622930960.2779026-UTR-H-elongata_contig5917:1557..1666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 1558..1666 +
1691679641.1650064-UTR-H-elongata_contig5917:1557..16661691679641.1650064-UTR-H-elongata_contig5917:1557..1666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 1558..1666 +
1622930960.2934055-UTR-H-elongata_contig5917:1979..20201622930960.2934055-UTR-H-elongata_contig5917:1979..2020Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 1980..2020 +
1691679641.175274-UTR-H-elongata_contig5917:1979..20201691679641.175274-UTR-H-elongata_contig5917:1979..2020Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5917 1980..2020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.312475-CDS-H-elongata_contig5917:2020..20231622930960.312475-CDS-H-elongata_contig5917:2020..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5917 2021..2023 +
1691679641.1831503-CDS-H-elongata_contig5917:2020..20231691679641.1831503-CDS-H-elongata_contig5917:2020..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5917 2021..2023 +
1622930960.334184-CDS-H-elongata_contig5917:2395..25931622930960.334184-CDS-H-elongata_contig5917:2395..2593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5917 2396..2593 +
1691679641.19154-CDS-H-elongata_contig5917:2395..25931691679641.19154-CDS-H-elongata_contig5917:2395..2593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5917 2396..2593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5917.13428.1

>prot_H-elongata_contig5917.13428.1 ID=prot_H-elongata_contig5917.13428.1|Name=mRNA_H-elongata_contig5917.13428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MQGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVH
GRRKAIRSLGSVGDGFD
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mRNA from alignment at H-elongata_contig5917:446..2593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5917.13428.1 ID=mRNA_H-elongata_contig5917.13428.1|Name=mRNA_H-elongata_contig5917.13428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2148bp|location=Sequence derived from alignment at H-elongata_contig5917:446..2593+ (Himanthalia elongata Himel1 dioecious)
GTAGATACCTCGAGCCTCAAATGTTTATCGGAAACTCCCAACAAGCGGAA
CAAGCTAACGATGATTGCTGAGTCGCTCGAGAACGGCCTCGCGGTGGACA
TCGAGTCAGGAGAGGTGAGATAACACCCAGCGGCTGGATCGATCGATTGA
TCGATCGAGGCCACTGCTTGCTAGTATAAATTCAAGTCTGCTATCCTGCA
TTATTGTATATACCACTTTATTGCGGGCGGGTAGGCAGGACTGAGCCTTG
CGGTGGTTTGGTGGGGAAGGGATAGGACTGAGCGTTATTTCATCGACAAC
TGGTGCCTAGGATATTACCGCATTCTTCGTGCCGTTTTATGCAGCGAAGC
GCTCTTGTTTCGTGTTAATATGGAATTGTATCTTCGGAGGGAACCCTATG
GATCCCGGGGGGGGTGAGGGGGGTGACGCAAGATAGCTAGTAATGGTAAA
GTAAAGTATATTATTAAATAGTATAGAATAGGGTTTTGTAGAATAACCCG
TCGGCTTTATAACTTGTTTCCGTGTCCGGATGCTGCCGACCAGGTGTAAC
CGTAAAAAAGGTCAGCATCGAGTGGGGTAGGAAAACGCTGGGGAAGTTTT
TTCAGGCCAAGTACGACTGGGACCTGCTCACCAACAGATTTATCTAGGCG
CTCGGGGCCGAGATCGACGGGTCTAACATCCTCGTGGACGGCACCCTTCC
TAGCGAGGTGAGCGAGAGCGAAATAATCGTACAGGAGGCGTTTTTATCCA
TCGTTTTATCATCCGCGCCTAGAGCGAGAGGAGAGTAGGGTTGGTTATTT
CTTGGGCGAATATAGACTTGAATAAATTCGAGGACTTGGAGCTTGCTGCG
ATGTGTAATGACAGAATTCTTCTTGTGTGGGATGTACTCTTATTAATAGT
TATTAGTTAATAGACCACGAGCGGAAGTGGAGAGGTCGGTCATGCGAGAA
ACATGGGTACGGGGGCGGGTGTGCACACATAAAACGTGATAAGCACATTT
CTTAAGATGTCCCTTCCTCCCCCACCCCTTATCATGCCCCTTCCTCCCTC
CGACCGACAGGTGGACAAAAATCGTTTGAGCACGTGCAGAGAGCGTCCAG
GGCTTCCAGTAGAGTTGCCGAGAGGGTCCTCTCTGTGACGAGCTCATTCG
GAATGCCAAGTTCAAGATCCTTGACGCCGTCATCGCGGCGGAACCGATCC
ATCGGGGAGGTGGTCAGGTGTGTTTGCCGGTTCTCGTCCTTTTCTTTTGA
GCGCTTGAGCTTTTCCGGTATTTCACGCCACCCTTCACTCTCTCCAAAAG
CGAGGTTATTTTTAATCTCGATAAGCAGGGTGGATAGTGGGTGTTTGTAT
GGCGACACCAGCCGCCGACCTGCTTGTTGGGTGTAAGGGTCCGCATCGTC
CGTTCATACCGCCGGTGACCCTCACGGCAACCGGCTGTCGTCCAGCACTA
TTAATATATTTTTTGGCTGCTGTTGCCGCTCAACACGTTTTCGCCGTCCT
TGTTTGCACCCTATGCGGCGTCGATCGACGAAAGTGATCCCCACCGCAAG
GCTCGTGGCGTACTCAGCCTTCCTCATGGTTACGCCTCGCCTGATGGAGC
CAGTGTTTAGGGTGGAGGTGCAGGCGCCGGCAGACGTGGTGTCGGCGATC
TATCCCGCTCTCCAGAGAAGGAGAGGGCACGTGGTGCAGGACGCGCCCAA
GCCAGGAGCGCCGTTTTACACGGTCGAGGTGTTCATCCCCGCTATCGACT
TGTTTGACTTCGAGATGGACCTGCGCGCGTATAAGCAGGTCGGTGGGCCT
TGCGTCGAAATGCCTTTTCGTCTATCTTTTCTATAGACTAGAGGCAATAT
TAAAGCTTCTGCTGCTGCGATCTGTCAAAGCCAGCGTTACGACTGCTGCC
CTGTAGGATCTTCGTGTCTCGGAAAGATGCCCGAATTTTCCCTCCTTGAG
CAGGGGCAAGCGTTTTGTACGCAAGTCTTCAACCACTGGAACATCGTGCC
TGGTGATCCGTTGGACCGCAACATTATCCTGCATCCGCTGGAGCCGTCCC
CGCCACAGCACCATGCGACGGAGTTCATGGTGCATCTTTCCGTCCATGGA
AGACGTAAGGCGATTCGCTCGTTGGGGTCTGTCGGTGATGGATTTGAT
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Coding sequence (CDS) from alignment at H-elongata_contig5917:446..2593+

>mRNA_H-elongata_contig5917.13428.1 ID=mRNA_H-elongata_contig5917.13428.1|Name=mRNA_H-elongata_contig5917.13428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig5917:446..2593+ (Himanthalia elongata Himel1 dioecious)
ATGATGCAGGGGCAAGCGTTTTGTACGCAAGTCTTCAACCACTGGAACAT
CGTGCCTGGTGATCCGTTGGACCGCAACATTATCCTGCATCCGCTGGAGC
CGTCCCCGCCACAGCACCATGCGACGGAGTTCATGGTGCATCTTTCCGTC
CATGGAAGACGTAAGGCGATTCGCTCGTTGGGGTCTGTCGGTGATGGATT
TGATCAGGGGCAAGCGTTTTGTACGCAAGTCTTCAACCACTGGAACATCG
TGCCTGGTGATCCGTTGGACCGCAACATTATCCTGCATCCGCTGGAGCCG
TCCCCGCCACAGCACCATGCGACGGAGTTCATGGTGCATCTTTCCGTCCA
TGGAAGACGTAAGGCGATTCGCTCGTTGGGGTCTGTCGGTGATGGATTTG
AT
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