mRNA_H-elongata_contig59140.13425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59140.13425.1
Unique NamemRNA_H-elongata_contig59140.13425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 2.800e-116
Identity = 173/235 (73.62%), Postives = 202/235 (85.96%), Query Frame = 1 
Query:    4 VVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHVHPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            VVVMDG+SERER EAVR GLR VY F EVEGIGASH HPHRPP   D+ATFCYTSGTTG+PKGALLTHRNFIA  AA  LM+  +    D+YLS+LPLPHIFER+V V   N GAA+G FRGDPTLL+ED++ALRPT++A VPR+LNRL+D IV G+LAAGG+K +LFVKACEAKV+GLH+G LT+ALWDKLVFGKIK ALGLDR+++MVTG+AP+A HVLTFMRIL+G P+LEG
Sbjct:  159 VVVMDGISERERREAVRAGLR-VYAFAEVEGIGASHAHPHRPPGPNDLATFCYTSGTTGNPKGALLTHRNFIADSAAAELMETFNADSTDVYLSYLPLPHIFERMVQVAILNVGAAVGIFRGDPTLLVEDMQALRPTVMAAVPRVLNRLHDKIVQGMLAAGGLKTKLFVKACEAKVQGLHEGRLTHALWDKLVFGKIKAALGLDRIQMMVTGSAPVAAHVLTFMRILIGVPLLEG 392
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA)

HSP 1 Score: 270 bits (690), Expect = 7.840e-83
Identity = 134/236 (56.78%), Postives = 175/236 (74.15%), Query Frame = 1 
Query:    7 VVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHVH--PHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            V MD V    R+ A   GLR VY   E+E IGA+H+   PHRPP+A D+ATFCYTSGTTG+PKGAL+ H N ++  A  + M       +++Y S+LPLPHIFER V V  +  GA +GF+R +P  L+ D+ ALRP L+  VPR+LNRL+D I HG+LAAGG+KARLFV+ACEAKVRGLH G   +ALWD+L+F K++ ALG+DR+R++VTG+AP+A HVLTFMRIL+G  ++EG
Sbjct:  201 VTMDPVGPAARSAAEVAGLR-VYLMSELEEIGAAHLEAWPHRPPSANDIATFCYTSGTTGNPKGALIRHVNMVSDAAGCYAMGLAHCTPDEVYFSYLPLPHIFERQVQVAVFCGGAPVGFWRNNPLELVADMAALRPVLMPAVPRVLNRLHDKITHGMLAAGGLKARLFVRACEAKVRGLHNGTNKHALWDRLIFAKLRAALGMDRLRLVVTGSAPIAPHVLTFMRILLGCDLIEG 435
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: A0A1Z5JLC6_FISSO (Long-chain-fatty-acid--CoA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLC6_FISSO)

HSP 1 Score: 249 bits (636), Expect = 5.570e-75
Identity = 125/239 (52.30%), Postives = 169/239 (70.71%), Query Frame = 1 
Query:    4 VVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHV----HPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            ++V+DGV+     +A R GL  +  + +VE +GA  +    H HRPP   D+ATFCYTSGTTGDPKGALLTH N ++  A       V    +D +LS+LPL HIFER V    + AGA++ FFRGDPTLL+EDL+A RPTLL   PR+LN++YD I  GV AAGGMK++LF  A  AK  GL +GHL +AL+D+L+F KIK+ LG+D +R+M++G+APL+ +V+TF R ++G PV+EG
Sbjct:  200 IIVIDGVTPEVADQAGRAGLE-IISYAKVEAVGAHRIATQGHRHRPPQPGDIATFCYTSGTTGDPKGALLTHENMVSSMAGISQFPEVAIRTDDRHLSYLPLAHIFERTVISQVFLAGASVAFFRGDPTLLIEDLQACRPTLLPAAPRVLNKIYDKITTGVAAAGGMKSKLFNAALAAKTEGLKKGHLHHALYDRLIFSKIKKGLGMDYLRVMISGSAPLSENVMTFFRCMLGIPVVEG 437
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: A0A7S1U294_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U294_9STRA)

HSP 1 Score: 234 bits (597), Expect = 8.990e-73
Identity = 115/237 (48.52%), Postives = 160/237 (67.51%), Query Frame = 1 
Query:    1 NVVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHVHPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDP-GMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            +V+VM+ V+  +R    ++GL  +Y + EV   G +H     P    D+ATFCYTSGTTG+PKGA+LTH N ++G A       ++P G E ++LS+LPLPH+FER+V +  Y+ G  +GFFRGDP  L ED+ AL+PT+ A+VPR++N+LYD ++  V  A   KA LF +A   K+RGL  G L N LWD LVFGK+K  LG   +++MV G+AP+A HVL+FMR+L G P+ EG
Sbjct:  103 HVIVMEPVTHAQRHACGQRGLA-LYSYAEVCAAGEAHACDALPAQPGDIATFCYTSGTTGNPKGAMLTHENLVSGSAGIHDAITMEPLGPESVHLSYLPLPHVFERMVQLCVYSCGGRVGFFRGDPLKLFEDVNALQPTVFALVPRVVNKLYDKVMMAVADAPTFKAALFRRALRVKLRGLQMGRLKNDLWDSLVFGKVKAGLGFGSMKVMVIGSAPVAPHVLSFMRVLAGVPIAEG 338
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: A0A7S1V9E3_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9E3_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.160e-71
Identity = 124/239 (51.88%), Postives = 166/239 (69.46%), Query Frame = 1 
Query:    4 VVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHV----HPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            V+++DGV   E AE  R     V+ F +VE IGA  +    H H PP+A+DVATFCYTSGTTG+PKGALLTH NF++  A   +     P + D +LS+LPL HIFERVV      +GA+I F+RGDP  L+EDL+A RPT L   PR+LN++YD I  G+ AAGG K +LF  A  AK  GL +G+ T+AL+D+L+F KIK+ALG+D V+ MV+G+APL+ +V+TF R ++G  V+EG
Sbjct:   65 VILVDGVIP-EAAEMARSAGLDVFSFAKVEAIGAQRIAERGHKHTPPSASDVATFCYTSGTTGNPKGALLTHENFVSTIAG--MEPMYKPDISDRHLSYLPLAHIFERVVCSQTLASGASIAFYRGDPLFLIEDLQACRPTALPAAPRVLNKIYDKIQAGIAAAGGTKKKLFDAAIRAKSEGLKRGYTTHALYDRLIFNKIKKALGMDCVKFMVSGSAPLSSNVMTFFRCMLGVAVVEG 300
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: A0A7S1ZHK7_TRICV (Long-chain-fatty-acid--CoA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHK7_TRICV)

HSP 1 Score: 237 bits (604), Expect = 3.290e-71
Identity = 124/239 (51.88%), Postives = 165/239 (69.04%), Query Frame = 1 
Query:    7 VVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHV----HPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGM-EDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            V++DGV     + A   G+  V  F +VE +GA  +    H H PP+  DVATFCYTSGTTG+PKGAL+TH NF++  AA   MQ    G+  D +LS++PLPHIFER++    ++ GA+IGFFRGDPTLL+EDL+A RPT++   PR+LN++YD I +G+ AAGGMK  LF  A +AK   L  G L + L+D L+F KIK ALGLD VR MV+G+APL+  V+ F R +MG P++EG
Sbjct:   96 VLVDGVIPESASLAKSAGID-VVSFAKVEAVGAQSMSSGRHVHSPPSGADVATFCYTSGTTGNPKGALITHENFVSTVAA---MQTHMKGVTNDRHLSYMPLPHIFERILQAQIFSIGASIGFFRGDPTLLIEDLQACRPTIMIAAPRVLNKIYDKITNGINAAGGMKKALFDMALKAKTENLMHGQLKHGLYDHLIFNKIKAALGLDHVRQMVSGSAPLSETVMIFFRCMMGVPIVEG 330
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: B7FQ93_PHATC (Precursor of ligase long chain acyl-coa ligase n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ93_PHATC)

HSP 1 Score: 236 bits (602), Expect = 3.710e-70
Identity = 121/240 (50.42%), Postives = 168/240 (70.00%), Query Frame = 1 
Query:    7 VVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHV----HPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGME--DLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            +++DGV+E     A+  GL  V  F +VE +GA  +    H HRPPA TDVA FCYTSGTTG+PKGALLTH N ++   AGF     D   +  D +LS+LPL HIFER+V    + AGA++ FFRGDPTLL+ED++A RPT++ + PR+LN++YD I  G+ + GG+K +LF  A  AK  GL  GH+ +AL+D+L+F KIK+ LG+D++R+MV+G+APL   V+TF R ++  PV+EG
Sbjct:  182 ILVDGVTEDAAKMALEAGLE-VLSFAKVEAVGAVCIAEKGHHHRPPAPTDVAAFCYTSGTTGNPKGALLTHENIMSA-IAGFYGAVGDLEAQPFDRHLSYLPLAHIFERIVSSQMFCAGASVAFFRGDPTLLIEDMQACRPTVMPVAPRVLNKIYDKIQAGISSVGGLKKKLFDAAVAAKAEGLQSGHMKHALYDRLIFNKIKKGLGMDQLRMMVSGSAPLNDTVMTFFRCMLAIPVVEG 419
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: A0A7S2UI66_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI66_9STRA)

HSP 1 Score: 236 bits (601), Expect = 5.110e-70
Identity = 120/240 (50.00%), Postives = 165/240 (68.75%), Query Frame = 1 
Query:    1 NVVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHV----HPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            +V+++DGV      +A   GL  V  F +VE +GA       H H+PP+  D+ATFCYTSGTTG+PKGAL+TH N ++  A   + Q   P   D +LS+LPLPHIFER+V      AG++I F+RGDP LL+ED++A RPTL+   PR+LN+++D I  G++AAGG K R+F     AK  GL  GHL +AL+D L+F K+K+ALGLD VR MV+G+APL++ V+TF R ++G PV+EG
Sbjct:  182 HVILVDGVIPEAARQAKLVGLHLV-SFAKVEAVGAQSTAISKHKHKPPSGKDLATFCYTSGTTGNPKGALITHENIVSNIAG--MHQLFQPQPLDRHLSYLPLPHIFERMVVSQILLAGSSIAFYRGDPLLLIEDIQACRPTLMPAAPRVLNKIHDKIQAGMMAAGGAKKRIFDAGLAAKTEGLKHGHLKHALYDPLIFNKLKKALGLDHVRFMVSGSAPLSVSVMTFYRCMLGVPVVEG 418
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: B8CBL9_THAPS (Long-chain-fatty-acid--CoA ligase n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBL9_THAPS)

HSP 1 Score: 234 bits (596), Expect = 2.610e-69
Identity = 123/240 (51.25%), Postives = 167/240 (69.58%), Query Frame = 1 
Query:    1 NVVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHV----HPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            +V+++DGV+ +    A   GL+ V  F ++E +GA  V    H H PP   D+ATFCYTSGTTGDPKGAL+TH N ++  A G L + +     D ++S+LPLPHIFERVV      +GA+I FFRGDP LL+ED+ A RPT++ MVPR+LN+++D IV G+ A GG+  +LF  A EAK  GL +G L + LWD+++F KIK ALGLD VR+MV+G+APL+  V+ F R L+G PV+EG
Sbjct:  183 SVILVDGVTAQATDMANGAGLK-VVSFAKIEALGAQIVPTEGHKHTPPDPKDIATFCYTSGTTGDPKGALITHENIMS--AVGGLNE-IPILPTDRHISYLPLPHIFERVVVAQMLTSGASIAFFRGDPLLLIEDIVACRPTMVPMVPRVLNKIHDKIVAGMAAKGGVTEKLFKMAMEAKTLGLQEGRLKHPLWDRILFNKIKRALGLDCVRLMVSGSAPLSPKVMIFFRCLLGVPVMEG 418
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BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Match: W7TAS6_9STRA (Long-chain-fatty-acid--CoA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAS6_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.830e-68
Identity = 119/236 (50.42%), Postives = 166/236 (70.34%), Query Frame = 1 
Query:    4 VVVMDGVSERERAEAVRKGLRRVYDFIEVEGIGASHVHPHRPPAATDVATFCYTSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFERVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTIVHGVLAAGGMKARLFVKACEAKVRGLHQ-GHLTNALWDKLVFGKIKEALGLDRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG 708
            V+    +S+  RA A RKG  ++Y  +++E +G  +  PH PP   DVATF YTSGTTG PKGALLTHRNF+    AG  ++ V+   +D++ S+LPLPH+FERV+ +     GAA+GF++G P  L+EDL+ALRPT +  VPR+LNR+YD ++ GV AA  +K  LF +A  AK+R L + G L+  +WD+LVF K++ A+GLDR+R+MVTG+AP+A HVL FMR+L   P+ EG
Sbjct:  184 VLTCSVLSDHHRALA-RKGGLKLYSLMDLEKLGFRYPQPHFPPDPDDVATFSYTSGTTGGPKGALLTHRNFLTVYCAGKALE-VENFPDDIHFSYLPLPHVFERVMLLAVLGNGAAMGFWQGSPERLVEDLQALRPTCMPAVPRVLNRMYDKVMAGVRAASPLKQMLFQRAYAAKLRDLDERGELSKGVWDRLVFAKVRRAIGLDRMRVMVTGSAPIAPHVLQFMRVLCACPIHEG 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59140.13425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY7_ECTSI2.800e-11673.62Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarp... [more]
A0A835ZFW5_9STRA7.840e-8356.78Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A1Z5JLC6_FISSO5.570e-7552.30Long-chain-fatty-acid--CoA ligase n=2 Tax=Fistulif... [more]
A0A7S1U294_9STRA8.990e-7348.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1V9E3_9STRA1.160e-7151.88Long-chain-fatty-acid--CoA ligase n=1 Tax=Grammato... [more]
A0A7S1ZHK7_TRICV3.290e-7151.88Long-chain-fatty-acid--CoA ligase n=1 Tax=Trieres ... [more]
B7FQ93_PHATC3.710e-7050.42Precursor of ligase long chain acyl-coa ligase n=5... [more]
A0A7S2UI66_9STRA5.110e-7050.00Long-chain-fatty-acid--CoA ligase n=1 Tax=Attheya ... [more]
B8CBL9_THAPS2.610e-6951.25Long-chain-fatty-acid--CoA ligase n=2 Tax=Thalassi... [more]
W7TAS6_9STRA1.830e-6850.42Long-chain-fatty-acid--CoA ligase n=2 Tax=Monodops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59140contigH-elongata_contig59140:68..3311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue1.1e-58
Seed eggNOG ortholog2850.Phatr17720
Preferred nameACSL6
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
GOsGO:0000302,GO:0001101,GO:0001666,GO:0001676,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0003987,GO:0004467,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007405,GO:0007584,GO:0008150,GO:0008152,GO:0008283,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009628,GO:0009629,GO:0009651,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010193,GO:0010243,GO:0010562,GO:0010565,GO:0010604,GO:0010646,GO:0010720,GO:0010746,GO:0010747,GO:0010866,GO:0010867,GO:0010876,GO:0010941,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0015645,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016053,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019221,GO:0019222,GO:0019432,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019867,GO:0019899,GO:0022008,GO:0023051,GO:0023052,GO:0030154,GO:0030182,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031399,GO:0031401,GO:0031667,GO:0031903,GO:0031956,GO:0031957,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0031998,GO:0032000,GO:0032268,GO:0032270,GO:0032368,GO:0032370,GO:0032501,GO:0032502,GO:0032787,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032890,GO:0032892,GO:0033036,GO:0033211,GO:0033559,GO:0033674,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034097,GO:0034201,GO:0034284,GO:0034285,GO:0034641,GO:0034654,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0036109,GO:0036293,GO:0036314,GO:0042175,GO:0042178,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042579,GO:0042802,GO:0042803,GO:0042981,GO:0043067,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043270,GO:0043434,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0043651,GO:0044070,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044539,GO:0045017,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045834,GO:0045859,GO:0045860,GO:0045923,GO:0045937,GO:0046320,GO:0046321,GO:0046390,GO:0046394,GO:0046460,GO:0046463,GO:0046483,GO:0046486,GO:0046677,GO:0046889,GO:0046890,GO:0046942,GO:0046949,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051960,GO:0051962,GO:0055086,GO:0060255,GO:0060284,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0070013,GO:0070482,GO:0070542,GO:0070723,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071466,GO:0071495,GO:0071616,GO:0071702,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072089,GO:0072330,GO:0072521,GO:0072522,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097305,GO:0098588,GO:0098805,GO:0098827,GO:0120035,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903793,GO:1903959,GO:1903961,GO:1905952,GO:1905954,GO:2000026,GO:2000191,GO:2000193,GO:2001233,GO:2001236
EggNOG free text desc.AMP-binding enzyme
EggNOG OGs2XERM@2836,COG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size711
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59140.13425.1prot_H-elongata_contig59140.13425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59140 68..3299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.6983545-CDS-H-elongata_contig59140:67..1811622930959.6983545-CDS-H-elongata_contig59140:67..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 68..181 -
1691679640.956546-CDS-H-elongata_contig59140:67..1811691679640.956546-CDS-H-elongata_contig59140:67..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 68..181 -
1622930959.721998-CDS-H-elongata_contig59140:710..7791622930959.721998-CDS-H-elongata_contig59140:710..779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 711..779 -
1691679640.972553-CDS-H-elongata_contig59140:710..7791691679640.972553-CDS-H-elongata_contig59140:710..779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 711..779 -
1622930959.7440064-CDS-H-elongata_contig59140:1592..17211622930959.7440064-CDS-H-elongata_contig59140:1592..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 1593..1721 -
1691679640.9827392-CDS-H-elongata_contig59140:1592..17211691679640.9827392-CDS-H-elongata_contig59140:1592..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 1593..1721 -
1622930959.7829642-CDS-H-elongata_contig59140:2318..25561622930959.7829642-CDS-H-elongata_contig59140:2318..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 2319..2556 -
1691679640.992919-CDS-H-elongata_contig59140:2318..25561691679640.992919-CDS-H-elongata_contig59140:2318..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 2319..2556 -
1622930959.8002756-CDS-H-elongata_contig59140:3150..32991622930959.8002756-CDS-H-elongata_contig59140:3150..3299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 3151..3299 -
1691679641.0028825-CDS-H-elongata_contig59140:3150..32991691679641.0028825-CDS-H-elongata_contig59140:3150..3299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59140 3151..3299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930959.8131332-UTR-H-elongata_contig59140:3299..33111622930959.8131332-UTR-H-elongata_contig59140:3299..3311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59140 3300..3311 -
1691679641.012604-UTR-H-elongata_contig59140:3299..33111691679641.012604-UTR-H-elongata_contig59140:3299..3311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59140 3300..3311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59140.13425.1

>prot_H-elongata_contig59140.13425.1 ID=prot_H-elongata_contig59140.13425.1|Name=mRNA_H-elongata_contig59140.13425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
MDGVSERERAEAVRKGLRRVYDFIEVEGIGASHVHPHRPPAATDVATFCY
TSGTTGDPKGALLTHRNFIAGGAAGFLMQAVDPGMEDLYLSFLPLPHIFE
RVVHVLHYNAGAAIGFFRGDPTLLMEDLRALRPTLLAMVPRILNRLYDTI
VHGVLAAGGMKARLFVKACEAKVRGLHQGHLTNALWDKLVFGKIKEALGL
DRVRIMVTGAAPLAIHVLTFMRILMGAPVLEG*
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mRNA from alignment at H-elongata_contig59140:68..3311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59140.13425.1 ID=mRNA_H-elongata_contig59140.13425.1|Name=mRNA_H-elongata_contig59140.13425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3244bp|location=Sequence derived from alignment at H-elongata_contig59140:68..3311- (Himanthalia elongata Himel1 dioecious)
AACGTTGTCGTCATGGATGGCGTGAGCGAGCGGGAGCGGGCCGAGGCGGT
CCGCAAGGGGCTGCGACGCGTGTACGACTTCATCGAGGTGGAGGGAATTG
GGGCATCCCACGTCCATCCGCACCGCCCGCCCGCGGCCACCGACGTGGCG
ACATTTTGCTAGTGAGCCACACGTGACGGCTCCGTTCTTATTTGACATGA
GTCTCGATCCTAGGGTTGTTCTGTGGTAGCTTTGCTTAGAAGTTGATCGA
AACGCGGCCCTGGATCCTGAACAAGGCCGAAATCGGGGAGAGGTGAGAGA
GGGGGGGTGGGGGGGCGTACTCAAGCTTTCCCATGCCTTAGCTGTTAGAC
AATGATAACGCATCCTCGGGAGGACAGAGCCTTTTCCCGCGACGAGCCTA
AGGCTGGTGGCCCTGTCATTGGATTGGATTGGAAGGGGGTAGCAGGGCGG
GAGGGGGGGGTGGTAGGGTTATGACTATGACACGAAGGAAATAAAGGCGG
CGAGATCAGCAATGACAAGCAATAATTATGGGAGGGGTTCTTTGTTATTT
TAATAGTATTTCAAGGAGTCGCTTGTGAGCGTTACCGGTGCTCCAATCCA
TCCCTCGGCGAGGTGATTTCGGACCCTATTTCTTGTAAAAGTATTACGCG
GACGATTTAGGTCCTGCCCCCCCCACTCTCCCACCCCTTGATACCGCATG
CGCGCTGCGTCGCTTCATTCTCGTCATCCATCCGTGTCTTTTGCAACTGG
CGCAGCACCTCTGGCACGACGGGAGACCCCAAGGGCGCGCTGCTGACTCA
CCGAAACTTTATCGCTGGCGGTGCGGCCGGCTTTCTGATGCAAGCAGTCG
ACCCGGGCATGGAAGACTTGTATCTGTCCTTCCTTCCCCTGCCTCATATA
TTCGAGAGAGTGGTCCACGTGCTCCACTACAACGCTGGAGCAGCGATTGG
GTTCTTCCGAGGGGATCCCACCCTCCTGATGGAGGACTTGCGGGTGGGAA
AAGGAGAAGAACTCAAACGCGGGTTTGATTGGGGAAACTCCGGGAACAGG
GGGGGGAAGCCTCGTCGCGCTCGTTCTGCCCTAATTAGCACGCTACTGCT
GTCCTTCCCAGGAATATTACTATTATATTATTAGTATTAGTAGTAGGAGT
AGTAATATTATAGTTATTATAGTTATTGTAATTATTATAATTATTATTAT
TATTATTACGAAGTATATTTTTAATTTTACGTGAGAAGGTGTCATGCCGT
ACCGTTAAGCGGCGAATCATATCGTTTGAGCACAAGTACACATTTTTTTT
GCGGGGGGGGAGATGAGCCCAACTCTCTTTTTTTAGCTTTGGTATATCAT
CGGGAGGCGTTTTCCAGAGAAGATGCGTTTGTGCGGAGGGGAGGGGGGGT
GAGTTATATCACCTCCGTAACCGAACCAGCGGAGCAATATGTAGGACGCG
TGTGACGCTCAAGGGGCAAAGCACACGGCGCTGAAGTGGACTAAAATGCG
GTGCGTATTTACTACCTGTGCAACGACAATCACGCCAAAGCAAACCATCG
AGATCTCTCTGTTCCGCCTCTTTGCGAACGTCTCTTTCAGGCACTCCGGC
CCACCTTGCTTGCGATGGTCCCCAGGATCCTGAACCGGCTGTACGATACG
ATCGTGCACGGCGTGCTTGCCGCGGGAGGCATGAAGGCCAGGCTTTTCGT
TAAAGCCTGCGAGGCCAAGGTGTGAGGGGAGGGCTCGTTGGAAGAGCCCT
TGGGAGGTTTTCGTGCTTTTCTCGCCAAGCCTCCCTGTGTAGGGTCCTGC
TGTTTAGTCGTGAAATAAGCTTGTACTTCGTTACCGCTTTTGTTTTAGAG
ATATACTAACCAGACCCTTCCTTCGTTAGGCGATACTATTATTAAGATAT
TTGTTGGATTAGCTACTATTACTAAGACATTGTTGGATTAGATACTAATA
TTAAGACATTGTTGGATTAGCTACTTTTATTAAGATATTTGTTGGATTAG
CTACTTTTACTAAGACATTGTTGGATTAGCTACTATTACTAAAACTTTGT
TGGATTAGCTACTATTACTAAGACATTGTTGGATTAGATACTAATATTAA
GACATTGTTGGATTAGCTACTTTTATTAAGATATTTGTTGGATTAGCTAC
TTTTACTAAGACATTGTTGGATTAGCTACTATTACTAAAACTTTGTTGGA
TTAGCTACTTTTACTAAAACATTGTTCGACGATCGGTCAACATTTCACGA
AGCGTTTTCTGGTGACGGGGTCGATGTAGTTTTTCACCCAGCTAGAAGGA
GAAGAAAAAATAAGGCGGTGGTGACTCACACCGGTCAAATCAAGCCCCGA
GTGCGTCTACAACAACTCTATTTATGACGGTTTACTGCTCTAGACTAGCT
CTCGAGCTCTGTCCAGTGTGCATCTTTCCTCCGCTCCGCCTCCATGGCGG
CGGCGAATGATTTGCCATCCGTCCCATCCATCCATCCATCGATTCATCCT
CGGCCCGCGTGAATCACTCGCGCGTTCGTTAGGTGAGGGGCTTGCACCAA
GGACACTTGACGAACGCTCTGTGGGACAAGCTTGTCTTCGGGAAGATCAA
GGTGGGGGGGGTGTTATCAATAGGCCCCACGAGGATTGCTGTCTGGCGTG
ATGTTGTTTTACACGCGGAATTGGAAGAACACCATGCCACGGGCAGGACG
ATTTCAGCGGGAAGACGGTGGGGCATGTATGCAAATGTGGTGCATGCGCT
GGCGGTGTAGTGGTGGGATGGGGCAGCGGGGGGAATGGGGGTGGGAGCAT
TTGGACCACGGATTGCGGCCGCGTAAAACAAGACAGCGGAGTCCAAACAT
TGGACGTACGCCGCGTGATAGGCGGGGGGCTGCAAGTAGACGTTAGGCAT
TACTGCGTACAATTATGTCCCCTCCATTATAAGGAGGACGTCAACCTTAA
TAACCCCCGAAAACCTTGCTCGATACAGAGACGGCGCGCAACAAGCCCTC
CCACATCGTGGTTAAAAGGACAAGGTTTTTCTACTTGAGAACAGAGAGGG
TGATGTCTTTTTTTACGTTGGAGAGGCGCAAAGAGAGAGATGAAATGATA
GCATGAACGCCTTCTTCATCGTGTGCGCAGGAAGCACTCGGGCTCGACCG
CGTCCGCATCATGGTGACCGGGGCGGCGCCCCTAGCAATTCATGTGCTCA
CCTTCATGAGAATTCTCATGGGCGCACCGGTCCTGGAAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59140:68..3311-

>mRNA_H-elongata_contig59140.13425.1 ID=mRNA_H-elongata_contig59140.13425.1|Name=mRNA_H-elongata_contig59140.13425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig59140:68..3311- (Himanthalia elongata Himel1 dioecious)
ATGGATGGCGTGAGCGAGCGGGAGCGGGCCGAGGCGGTCCGCAAGGGGCT
GCGACGCGTGTACGACTTCATCGAGGTGGAGGGAATTGGGGCATCCCACG
TCCATCCGCACCGCCCGCCCGCGGCCACCGACGTGGCGACATTTTGCTAA
TGGATGGCGTGAGCGAGCGGGAGCGGGCCGAGGCGGTCCGCAAGGGGCTG
CGACGCGTGTACGACTTCATCGAGGTGGAGGGAATTGGGGCATCCCACGT
CCATCCGCACCGCCCGCCCGCGGCCACCGACGTGGCGACATTTTGCTACA
CCTCTGGCACGACGGGAGACCCCAAGGGCGCGCTGCTGACTCACCGAAAC
TTTATCGCTGGCGGTGCGGCCGGCTTTCTGATGCAAGCAGTCGACCCGGG
CATGGAAGACTTGTATCTGTCCTTCCTTCCCCTGCCTCATATATTCGAGA
GAGTGGTCCACGTGCTCCACTACAACGCTGGAGCAGCGATTGGGTTCTTC
CGAGGGGATCCCACCCTCCTGATGGAGGACTTGCGGCACCTCTGGCACGA
CGGGAGACCCCAAGGGCGCGCTGCTGACTCACCGAAACTTTATCGCTGGC
GGTGCGGCCGGCTTTCTGATGCAAGCAGTCGACCCGGGCATGGAAGACTT
GTATCTGTCCTTCCTTCCCCTGCCTCATATATTCGAGAGAGTGGTCCACG
TGCTCCACTACAACGCTGGAGCAGCGATTGGGTTCTTCCGAGGGGATCCC
ACCCTCCTGATGGAGGACTTGCGGGCACTCCGGCCCACCTTGCTTGCGAT
GGTCCCCAGGATCCTGAACCGGCTGTACGATACGATCGTGCACGGCGTGC
TTGCCGCGGGAGGCATGAAGGCCAGGCTTTTCGTTAAAGCCTGCGAGGCC
AAGGCACTCCGGCCCACCTTGCTTGCGATGGTCCCCAGGATCCTGAACCG
GCTGTACGATACGATCGTGCACGGCGTGCTTGCCGCGGGAGGCATGAAGG
CCAGGCTTTTCGTTAAAGCCTGCGAGGCCAAGGTGAGGGGCTTGCACCAA
GGACACTTGACGAACGCTCTGTGGGACAAGCTTGTCTTCGGGAAGATCAA
GGTGAGGGGCTTGCACCAAGGACACTTGACGAACGCTCTGTGGGACAAGC
TTGTCTTCGGGAAGATCAAGGAAGCACTCGGGCTCGACCGCGTCCGCATC
ATGGTGACCGGGGCGGCGCCCCTAGCAATTCATGTGCTCACCTTCATGAG
AATTCTCATGGGCGCACCGGTCCTGGAAGGGTGAGAAGCACTCGGGCTCG
ACCGCGTCCGCATCATGGTGACCGGGGCGGCGCCCCTAGCAATTCATGTG
CTCACCTTCATGAGAATTCTCATGGGCGCACCGGTCCTGGAAGGGTGA
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