mRNA_H-elongata_contig59070.13417.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59070.13417.1
Unique NamemRNA_H-elongata_contig59070.13417.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59070.13417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59070contigH-elongata_contig59070:740..1420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size681
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59070.13417.1prot_H-elongata_contig59070.13417.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59070 1031..1381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.4755979-UTR-H-elongata_contig59070:739..10301622930958.4755979-UTR-H-elongata_contig59070:739..1030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59070 740..1030 +
1691679640.563614-UTR-H-elongata_contig59070:739..10301691679640.563614-UTR-H-elongata_contig59070:739..1030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59070 740..1030 +
1622930958.5157287-UTR-H-elongata_contig59070:1381..14201622930958.5157287-UTR-H-elongata_contig59070:1381..1420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59070 1382..1420 +
1691679640.583133-UTR-H-elongata_contig59070:1381..14201691679640.583133-UTR-H-elongata_contig59070:1381..1420Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59070 1382..1420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.494691-CDS-H-elongata_contig59070:1030..13811622930958.494691-CDS-H-elongata_contig59070:1030..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59070 1031..1381 +
1691679640.5738962-CDS-H-elongata_contig59070:1030..13811691679640.5738962-CDS-H-elongata_contig59070:1030..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59070 1031..1381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59070.13417.1

>prot_H-elongata_contig59070.13417.1 ID=prot_H-elongata_contig59070.13417.1|Name=mRNA_H-elongata_contig59070.13417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MLVVLFTCRGWCRSSFSFLCPFPCSVKKWLQYSGGSTPAMASRRSSRRVP
SSFNALSTSCADRDSHFHVGAWRLVIQTPFVVHVPRPTLKMHRSPCIPPT
CMPTYISSCRILSHKC*
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mRNA from alignment at H-elongata_contig59070:740..1420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59070.13417.1 ID=mRNA_H-elongata_contig59070.13417.1|Name=mRNA_H-elongata_contig59070.13417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig59070:740..1420+ (Himanthalia elongata Himel1 dioecious)
ATAGCCTCTAGTGTTCGGGGAGGATTGAGGTGTGGACCTAGATTTTAGGG
AATTTCATGGCGCGCAAGTGTCCGGGAACATGTCTAATCGTCTAGGTGTC
AGGTAAGCTGTGTTGAATTTATAATGCATCTATATCCCTCAATATTCTGT
AGGAGCTCTTCCACTGAGTATCGGTAGCTACGTATAAGGGTGTGCCGTTT
CATAGCGCTTTACCAACAGCGACAACTGTGCTTTAGGGGAGGAGAGGAAA
TGAGGACCATCCAGGTCGTCCTGGAATGGTGAATAATCGTGATGCTGGTG
GTGTTGTTTACGTGTCGTGGTTGGTGTCGCAGTAGTTTTTCATTTTTGTG
TCCCTTCCCTTGCAGCGTAAAAAAGTGGCTTCAATATAGCGGTGGAAGCA
CGCCTGCCATGGCGTCGAGGCGTTCTTCCAGGCGCGTGCCGTCTTCGTTC
AACGCCCTCTCCACTAGTTGTGCCGACAGGGACTCTCATTTTCATGTCGG
GGCGTGGCGCCTCGTAATACAGACGCCATTCGTCGTGCATGTTCCCCGTC
CCACGCTCAAAATGCACCGCTCTCCTTGCATCCCCCCAACCTGTATGCCT
ACCTACATTTCATCATGTCGCATTTTGTCCCATAAGTGCTGATATTCGCG
CTTATTTTGTATCCCGCCCCCGTTCTCGATG
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Coding sequence (CDS) from alignment at H-elongata_contig59070:740..1420+

>mRNA_H-elongata_contig59070.13417.1 ID=mRNA_H-elongata_contig59070.13417.1|Name=mRNA_H-elongata_contig59070.13417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig59070:740..1420+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGTGGTGTTGTTTACGTGTCGTGGTTGGTGTCGCAGTAGTTTTTC
ATTTTTGTGTCCCTTCCCTTGCAGCGTAAAAAAGTGGCTTCAATATAGCG
GTGGAAGCACGCCTGCCATGGCGTCGAGGCGTTCTTCCAGGCGCGTGCCG
TCTTCGTTCAACGCCCTCTCCACTAGTTGTGCCGACAGGGACTCTCATTT
TCATGTCGGGGCGTGGCGCCTCGTAATACAGACGCCATTCGTCGTGCATG
TTCCCCGTCCCACGCTCAAAATGCACCGCTCTCCTTGCATCCCCCCAACC
TGTATGCCTACCTACATTTCATCATGTCGCATTTTGTCCCATAAGTGCTG
AATGCTGGTGGTGTTGTTTACGTGTCGTGGTTGGTGTCGCAGTAGTTTTT
CATTTTTGTGTCCCTTCCCTTGCAGCGTAAAAAAGTGGCTTCAATATAGC
GGTGGAAGCACGCCTGCCATGGCGTCGAGGCGTTCTTCCAGGCGCGTGCC
GTCTTCGTTCAACGCCCTCTCCACTAGTTGTGCCGACAGGGACTCTCATT
TTCATGTCGGGGCGTGGCGCCTCGTAATACAGACGCCATTCGTCGTGCAT
GTTCCCCGTCCCACGCTCAAAATGCACCGCTCTCCTTGCATCCCCCCAAC
CTGTATGCCTACCTACATTTCATCATGTCGCATTTTGTCCCATAAGTGCT
GA
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