mRNA_H-elongata_contig59059.13416.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0) HSP 1 Score: 60.1 bits (144), Expect = 1.240e-9 Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
M D+RLPK +M+GE++ VG Q+K + CL LK GI D W ++AQD WR +G + IA K + +R
Sbjct: 1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 3.660e-9 Identity = 32/87 (36.78%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQ----WTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
M+D RLPK ++ GE+ G AG G QE +W+ L EDL +FG+ ++ W A+D W E G FM+ W E + R
Sbjct: 144 MEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKR 230
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST) HSP 1 Score: 60.1 bits (144), Expect = 1.300e-8 Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
MDD RLPK +++G++ + R G Q + + L LK IN W +A D WR+T + G + N IAA KV+ R
Sbjct: 759 MDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 841
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST) HSP 1 Score: 58.5 bits (140), Expect = 4.150e-8 Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
MDD RLPK +++G+++ + R G Q + + L LK +N W +A D WR+T + G + N IAA KV+ R
Sbjct: 12 MDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREAR 94
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER) HSP 1 Score: 57.8 bits (138), Expect = 8.300e-8 Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
MDD RLPK +++G++ + R G Q + + L LK IN W +A D WR+T + G + N IAA KV+ R
Sbjct: 428 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVKCEAR 510
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: C3ZFY5_BRAFL (C2H2-type domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZFY5_BRAFL) HSP 1 Score: 55.8 bits (133), Expect = 1.430e-7 Identity = 30/82 (36.59%), Postives = 39/82 (47.56%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGL 246
MDD RLPK +++GE+ VG+ + + L LK F I D W + A D WR+ QG AEK RT L
Sbjct: 62 MDDHRLPKILLYGELAEGKRHVGRPKLRYKDSLKATLKDFSIPVDSWELAASDRSQWRRLVHQGAG-------IAEKRRTAL 136
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 1.880e-7 Identity = 29/87 (33.33%), Postives = 43/87 (49.43%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQ----WTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
M+D+RLPK ++ GE+ G G QE +W+ L EDL +F + ++ W A+D W E G FM+ W E + R
Sbjct: 121 MEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKWHRQEAEASAKR 207
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A654GTZ3_9CEST (C2H2-type domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GTZ3_9CEST) HSP 1 Score: 55.5 bits (132), Expect = 5.370e-7 Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
MDD RLPK +++G++ + R G Q + + L LK I W +A D WR+T + G + N IAA KV+ R
Sbjct: 425 MDDERLPKRLLYGDVATGSRRQGGQIRRYNDTLKSSLKRLQIKPTNWEELALDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 507
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A7M3VK05_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3VK05_SPIER) HSP 1 Score: 55.1 bits (131), Expect = 7.100e-7 Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKVRTGLR 249
MDD RLPK +++G++ + R G Q + + L LK IN W +A D WR T + G + N IAA K + R
Sbjct: 162 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKRLQINPTNWDELALDRPTWRGTVKTGAAIYEANRIAAAKAKREAR 244
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Match: A0A7M3QR85_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QR85_SPIER) HSP 1 Score: 54.7 bits (130), Expect = 9.420e-7 Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 1
Query: 1 MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVAQDDGDWRKTAEQGTEHFMKNWIAAEKV 234
MDD RLPK +++G++ + R G Q + + L LK IN W +A+D WR+T + G + N IAA K
Sbjct: 253 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKFSLKRLQINPANWEDLARDRPTWRRTVKTGAAIYGANRIAAAKT 330 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59059.13416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59059.13416.1 >prot_H-elongata_contig59059.13416.1 ID=prot_H-elongata_contig59059.13416.1|Name=mRNA_H-elongata_contig59059.13416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp MDDTRLPKCVMFGEIMGVAGRVGKQEKEWMGCLLEDLKSFGINTDQWTIVback to top mRNA from alignment at H-elongata_contig59059:37..291+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59059.13416.1 ID=mRNA_H-elongata_contig59059.13416.1|Name=mRNA_H-elongata_contig59059.13416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig59059:37..291+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59059:37..291+ >mRNA_H-elongata_contig59059.13416.1 ID=mRNA_H-elongata_contig59059.13416.1|Name=mRNA_H-elongata_contig59059.13416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig59059:37..291+ (Himanthalia elongata Himel1 dioecious)back to top |