mRNA_H-elongata_contig59020.13411.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59020.13411.1
Unique NamemRNA_H-elongata_contig59020.13411.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.430e-27
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   19 EWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCEIPSAAGEGGNDIVIANG 246
            E ST G CIVCFG Y+YGEELCRL C HLYHA+CID W DG NHGWCPLCKT ++        AG   N+  + +G
Sbjct:  245 EGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDIMSTSGYLDPAGSSNNNNAVRSG 320
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BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.460e-26
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   19 EWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCEIPSAAGEGGNDIVIANG 246
            E ST G CIVCFG Y+YGEELCRL C HLYHA+CID W DG NHGWCPLCKT ++      + AG   N+  + +G
Sbjct:  252 EGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDIISTSGYLNPAGSSINNNAVRSG 327
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BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.690e-24
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   13 AEEWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCEIPSAAGEGG 222
            +E WS +  CI+CFG Y+ G+ LCRLPCRH YHA+CIDAW D   H WCPLCK+ +L+  E P  + E G
Sbjct:   69 SELWSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSE-PRNSSENG 137
[Close]
BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.740e-23
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 TRGRAEEWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCE 195
            T G +E WS+   CI+CFG Y+ G+ LCRLPCRH YHA+CIDAW DG  H WCPLCK+ +L   E
Sbjct:  445 TGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSE 509
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BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 9.220e-18
Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   19 EWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKT 174
            EWST   CIVCFG Y  G+ L RLPCRH+YHAQCID W D      CPLCKT
Sbjct:  252 EWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKT 303
[Close]
BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.970e-17
Identity = 33/52 (63.46%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   19 EWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKT 174
            EWST   CIVCF  Y  G+ L RLPCRH+YHAQCID W D      CPLCKT
Sbjct:  152 EWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKT 203
[Close]
BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.420e-16
Identity = 33/52 (63.46%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   19 EWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKT 174
            EWST   CIVCFG Y  G+ L  LPCRH+YHAQCID W D      CPLCKT
Sbjct:  345 EWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKT 396
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BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: A0A2J6LSC2_LACSA (RING-type domain-containing protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6LSC2_LACSA)

HSP 1 Score: 67.8 bits (164), Expect = 3.010e-11
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   40 CIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCEIPSAAGEG 219
            C +C   Y  G+E+  LPCRH YHA C+D W   VN G CP+C+  V   C+ P+AA EG
Sbjct:  413 CYICLVDYEEGDEIRVLPCRHEYHAPCVDKWLKEVN-GVCPVCRCNV---CDTPAAAAEG 468
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BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: A0A3S3QJZ8_9MAGN (E3 ubiquitin-protein ligase RHA2A n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3QJZ8_9MAGN)

HSP 1 Score: 64.3 bits (155), Expect = 7.260e-11
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   40 CIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCEIPSAAGEGGNDIV 234
            C+VC  G   GE++ +L CRH++H +C+D WFD  N   CPLC+  ++ +  +       G D+V
Sbjct:   93 CVVCLSGLREGEQVRKLACRHVFHRECLDGWFDHQNLN-CPLCRAPLVAEERVAEMGRRVGGDLV 156
[Close]
BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Match: A0A6A1V0Q0_9ROSI (E3 ubiquitin-protein ligase RHA2A n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1V0Q0_9ROSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.820e-11
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   40 CIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNHGWCPLCKTGVLVDCEIPSAAGEGGNDIV 234
            C+VC      G+++ RLPCRH++H +C + W D +N   CPLC++ ++ D  +  A+   G+D+V
Sbjct:   95 CVVCLSTLREGDQVRRLPCRHVFHKECFNGWLDHLNFN-CPLCRSPLVSDERVALASRRVGSDLV 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59020.13411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSX3_ECTSI3.430e-2759.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE1.460e-2659.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUH7_9PHAE3.690e-2455.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI4.740e-2360.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI9.220e-1865.38RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE1.970e-1763.46RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ1_ECTSI1.420e-1663.46RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A2J6LSC2_LACSA3.010e-1148.33RING-type domain-containing protein n=4 Tax=Lactuc... [more]
A0A3S3QJZ8_9MAGN7.260e-1136.92E3 ubiquitin-protein ligase RHA2A n=1 Tax=Cinnamom... [more]
A0A6A1V0Q0_9ROSI7.820e-1136.92E3 ubiquitin-protein ligase RHA2A n=1 Tax=Morella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59020contigH-elongata_contig59020:218..3090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D8LSX3
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-26_001750.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.002966-CDS-H-elongata_contig59020:217..3731622930958.002966-CDS-H-elongata_contig59020:217..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59020 218..373 -
1691679640.397583-CDS-H-elongata_contig59020:217..3731691679640.397583-CDS-H-elongata_contig59020:217..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59020 218..373 -
1622930958.018869-CDS-H-elongata_contig59020:2973..30901622930958.018869-CDS-H-elongata_contig59020:2973..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59020 2974..3090 -
1691679640.4140158-CDS-H-elongata_contig59020:2973..30901691679640.4140158-CDS-H-elongata_contig59020:2973..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59020 2974..3090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59020.13411.1prot_H-elongata_contig59020.13411.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59020 218..3090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59020.13411.1

>prot_H-elongata_contig59020.13411.1 ID=prot_H-elongata_contig59020.13411.1|Name=mRNA_H-elongata_contig59020.13411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
TRGRAEEWSTAGVCIVCFGGYSYGEELCRLPCRHLYHAQCIDAWFDGVNH
GWCPLCKTGVLVDCEIPSAAGEGGNDIVIANGAEVGLFVV*
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mRNA from alignment at H-elongata_contig59020:218..3090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59020.13411.1 ID=mRNA_H-elongata_contig59020.13411.1|Name=mRNA_H-elongata_contig59020.13411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2873bp|location=Sequence derived from alignment at H-elongata_contig59020:218..3090- (Himanthalia elongata Himel1 dioecious)
ACGCGAGGACGCGCCGAAGAGTGGTCGACCGCCGGCGTGTGTATCGTGTG
CTTCGGCGGCTACTCGTACGGCGAGGAACTCTGTCGGCTCCCCTGCCGCC
ACCTTTACCATGCACAGGTTTGCATAGACAGATATATACATACGACATAA
TATGATATACATACGACATAATATTATATACATACGACATAATATGATAT
ACATACGACATAATATTAGATACATATGACAAAATATGATATACATATGA
CATAATATGATATACATATGACATAATATGATATACATACGACATAATAA
GCAGATGACCGATATATATATGGATATATTGATATATGGATATATTGATT
TATTGATATATGGATATATATTGATATATTGATTGGTATAGAGCCAACAG
GCAGATGACACATACATAATATATCTGGTATATATATATATAGGAAGCAT
AATATTATCGATATCGATGAGAGACAACAACACCCCGTACTTGTTTTACT
CTAGATTAGTACTGTATGCATTACATAATACACGGACTGTTGTTTCATAC
TGTAGATACAGTAGTACTAATATTACCGCAGTACTGGATGGATATAAAAA
CACAAACACACAAATCCCCCATTGGGATGGTCAATGCGAGAGAGAGAGAG
AGAGAGAGAGAGAGTAGCCTAGAAGACCTAGCGTGACAGAGAAGAGCCGG
ATTGCGCGGTTATGTGCAATTTAATTTAATAAATACACACGCATACATAC
CCCCCCCTAGGATGATCAATACGAGTGGCATAGAAGGACTAGGACGATAG
GGCCGGATTGTGCGGTTATGTGCAATTTCATAAATACACACACAGACACA
CACGCACACACGGAAATCAACTCCCAGGTGGGATATGGTTACTAATGCAG
TATGAATAGTATTAATAGTATGAATAGTATTAATAGTATGAATAGTAGAT
GACAGGACCAGATAACAAATAACGCGGTTATGTCCAATTTTATAACTACA
CACATATACACACATAAGAGAGTATATATATTAACTAGAGAGAGAGAGTA
TCACCTGCTGATAGAATTATGAATGGATGGATTTACGCGCATTTCTAGCC
AAAAATATGTTCACGGAAAGTGACTCCCAGGGCTGGATTGCGCAGTTATG
TGCAATTTAATCAACAAACACACACACACACACACACACGCAAACACACA
TAGTCGAGGGTGGAGGGAGTTGCTCTTGAGAGTGTCCCGTCTGTCTCCCC
TCCTTTTATGGTTTGAAGTACCCCGTAGGGGGGGTGGAACGGGTGGGATG
ACTCGGGTGTAAATGCCCAAGTCTTCGGTGAAACGAAGTTCGCATTTTCT
TTAGAAATGTATATAGAAATGTATGTATATATATATGTATGTGTATTTAT
TAAATTGCACATAACCGCGCAATCCGGCCCTGTCGTCCTAGTCATTCTAT
GCCACTCGTATTGATCCTCCTAGGGGGGATCAATGATGTGTGTGTGTGTG
TGTGTGTGTATATTATATATATTCATTAAATTGCACATAACCGCGCAATC
CGGCCCTGTCATCCTAGTCATTCTATGTCACTCGTATTTGTGTGTGTGTG
TGTGTGTGTGTGTGTATTATATATATTTATTAAATTGCACATAACCGCGC
AATCCGGCTCTGTCATGCTAGCTCTTCTAGGCTACTATCGCATTGATCCT
CCCAATGGGGGATTCAATAATATTTGCTACAAAAACCTCTATTAATTAAT
GATCTATTAATGATCTATTAATGATCTATTAATGATCTATTAATGATCAG
ACGTGACAAAGGAGACATAATCTCTCTAAATTTCGTATCTAAGCCATCAA
TCAATACCTTGCGCTTCCTTTTTTGCTTCCTTGTTCGTCATCGCTATATC
GCTATATATCTTCGGTCGGCCCTTATTGGACCAACACTAATACCTCCCAT
CCACCCTTTTTACTACTGCTACCCAAATCTCCACCGCTTCCTCCCGTTTT
ACGCTTCTTCGACCCTCCCCTCCTCTTCCCGCCCCCTGGCCTTTAGACAT
TATGTGTCCCCGTGGATCTCACCTTATTTTCTCTTGGGAGTCAGCCAACA
AGGAGACATTCAAGACTACCAGTACTATATAATTAATAGAAGGCATCTCC
ACCCTAGGGAAGAGGGCTTCTGCCTTTTATCGTTTATTCCTCCCCACCCC
CAAACAGACAGCTCATTTTCAGGTTGGGCATTGACCCCCCCCCCCCCGAC
CTCCTTGCAATTCTATGATCCGTGTAAGTATTGCGTGGGTATGCACTTCT
AAAAGATAATATACTATACTAGGTACTTCGTCATATAATTTAACATAATG
GGGGATGTTTTGTGTTCTGTACCTCCTCCGGTTCTGCTATGCTCTCTCTT
TCTCTGTCATAGTCTCTCTCTTTCTCTTGTCATAGTCTCTCTCTTTCCAT
AGTCTCTCTCTTTCTCTGTCATAGTCTCTCTCTTTCTCTGTCATAGTCTC
TCTCTTTCTCTGTCATAGTCTTTCCTCTTTCTCTGTCATAGTCTCTCATC
TTTCTCTATCATAATCTCTCCTCTTTCTCTGTCACAGTCTCTCTCTTTCT
CTTGTCATTGTATCTCTCTTTCTCTGTTATAGTCTCTCTCTTTCTCTGTC
ATAGTCTCTTTTCTTCTCTTCTCTTTCTCTTTCTCTTCTGTTCTTTCCTG
TTATGCTTGATCGGCAGTGTATCGACGCGTGGTTCGATGGCGTGAACCAC
GGGTGGTGTCCCCTCTGCAAGACCGGTGTGCTCGTTGACTGTGAGATTCC
CAGCGCGGCTGGCGAAGGTGGCAATGACATTGTCATTGCCAATGGCGCTG
AGGTGGGATTATTCGTCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig59020:218..3090-

>mRNA_H-elongata_contig59020.13411.1 ID=mRNA_H-elongata_contig59020.13411.1|Name=mRNA_H-elongata_contig59020.13411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig59020:218..3090- (Himanthalia elongata Himel1 dioecious)
ACGCGAGGACGCGCCGAAGAGTGGTCGACCGCCGGCGTGTGTATCGTGTG
CTTCGGCGGCTACTCGTACGGCGAGGAACTCTGTCGGCTCCCCTGCCGCC
ACCTTTACCATGCACAGACGCGAGGACGCGCCGAAGAGTGGTCGACCGCC
GGCGTGTGTATCGTGTGCTTCGGCGGCTACTCGTACGGCGAGGAACTCTG
TCGGCTCCCCTGCCGCCACCTTTACCATGCACAGTGTATCGACGCGTGGT
TCGATGGCGTGAACCACGGGTGGTGTCCCCTCTGCAAGACCGGTGTGCTC
GTTGACTGTGAGATTCCCAGCGCGGCTGGCGAAGGTGGCAATGACATTGT
CATTGCCAATGGCGCTGAGGTGGGATTATTCGTCGTGTGATGTATCGACG
CGTGGTTCGATGGCGTGAACCACGGGTGGTGTCCCCTCTGCAAGACCGGT
GTGCTCGTTGACTGTGAGATTCCCAGCGCGGCTGGCGAAGGTGGCAATGA
CATTGTCATTGCCAATGGCGCTGAGGTGGGATTATTCGTCGTGTGA
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