mRNA_H-elongata_contig58984.13402.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58984.13402.1
Unique NamemRNA_H-elongata_contig58984.13402.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-18
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    7 RWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            RW TSWKRFFIEMAYQAQYYMLYPNFFNQTSF+TNWLE G
Sbjct:  824 RWKTSWKRFFIEMAYQAQYYMLYPNFFNQTSFATNWLEAG 863
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A836CAV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.440e-14
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            T  W  SWKR+FIEMAYQ  YYMLYPN+ NQTSF+TNWLE G
Sbjct:  540 TNWWRVSWKRYFIEMAYQRDYYMLYPNYHNQTSFATNWLEPG 581
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A1Y2GST6_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GST6_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            T RW+ SWK+ FIEM Y   Y MLYPNFFN TSFSTN LE G
Sbjct:  378 TNRWSNSWKKLFIEMIYMRGYVMLYPNFFNFTSFSTNHLEWG 419
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A197K2U9_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K2U9_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            T RW+ SWK+ FIEM Y   Y MLYPNFFN TSFSTN LE G
Sbjct:  761 TNRWSNSWKKLFIEMIYMRGYVMLYPNFFNFTSFSTNHLEWG 802
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A7S0J5W7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5W7_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 1.000e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            T +W+TSWK+F IE+AY     ++YPNF NQTSFSTN LE G
Sbjct:   51 TNQWSTSWKKFMIELAYLRGQVVVYPNFENQTSFSTNHLESG 92
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A7S3QRE9_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QRE9_DUNTE)

HSP 1 Score: 61.2 bits (147), Expect = 1.330e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            T  W  SWK+F+IE+A+    +MLYPNFFNQ+SFSTN LE G
Sbjct:  245 TNGWKQSWKKFYIELAWAKGMFMLYPNFFNQSSFSTNHLEAG 286
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A433PLK2_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PLK2_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 1.830e-9
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            + RW  SWKR+FIEM Y   Y MLYPNF N TSFSTN LE G
Sbjct:  774 SNRWYNSWKRYFIEMIYLRGYVMLYPNFHNFTSFSTNHLEFG 815
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A8H7UHP5_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UHP5_MORIS)

HSP 1 Score: 60.5 bits (145), Expect = 2.490e-9
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            + RW  SWKR+FIEM Y   Y MLYPNF N TSFSTN LE G
Sbjct:  738 SNRWKASWKRYFIEMIYLRGYTMLYPNFQNFTSFSTNHLEFG 779
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BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A8H7PVT4_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PVT4_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.490e-9
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            + RW  SWKR+FIEM Y   Y MLYPNF N TSFSTN LE G
Sbjct:  778 SNRWKNSWKRYFIEMIYLRGYTMLYPNFENFTSFSTNHLEFG 819
[Close]
BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Match: A0A0M0K380_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K380_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 4.640e-9
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVG 126
            T  W TSWK+F IE+AY   Y +LYPNF NQ+SFSTN LE G
Sbjct:  507 TNGWKTSWKKFLIELAYLRGYVVLYPNFGNQSSFSTNHLEPG 548
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58984.13402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV6_ECTSI1.510e-1892.50Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
A0A836CAV5_9STRA4.440e-1473.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Y2GST6_9FUNG1.490e-1069.05Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A197K2U9_9FUNG1.490e-1069.05Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A7S0J5W7_9EUKA1.000e-961.90Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S3QRE9_DUNTE1.330e-961.90Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A433PLK2_9FUNG1.830e-966.67Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A8H7UHP5_MORIS2.490e-966.67Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A8H7PVT4_9FUNG2.490e-966.67Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A0M0K380_9EUKA4.640e-964.29Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58984contigH-elongata_contig58984:3300..3458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.9
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog78898.MVEG_03808T0
EggNOG OGs1GV6E@112252,2CMCB@1,2QPYF@2759,38B9U@33154,3NZBG@4751
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.9219117-CDS-H-elongata_contig58984:3299..34581622930956.9219117-CDS-H-elongata_contig58984:3299..3458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58984 3300..3458 -
1691679640.0013463-CDS-H-elongata_contig58984:3299..34581691679640.0013463-CDS-H-elongata_contig58984:3299..3458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58984 3300..3458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58984.13402.1prot_H-elongata_contig58984.13402.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58984 3300..3458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58984.13402.1

>prot_H-elongata_contig58984.13402.1 ID=prot_H-elongata_contig58984.13402.1|Name=mRNA_H-elongata_contig58984.13402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
TKRWNTSWKRFFIEMAYQAQYYMLYPNFFNQTSFSTNWLEVGRGNSRHRT
RR*
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mRNA from alignment at H-elongata_contig58984:3300..3458-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58984.13402.1 ID=mRNA_H-elongata_contig58984.13402.1|Name=mRNA_H-elongata_contig58984.13402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig58984:3300..3458- (Himanthalia elongata Himel1 dioecious)
ACAAAAAGGTGGAACACTTCGTGGAAGCGTTTCTTCATCGAGATGGCTTA
CCAGGCTCAGTACTACATGCTGTACCCGAACTTCTTCAACCAGACGTCCT
TCTCCACCAACTGGCTAGAAGTGGGTCGAGGGAACAGCCGCCACCGCACG
CGTCGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig58984:3300..3458-

>mRNA_H-elongata_contig58984.13402.1 ID=mRNA_H-elongata_contig58984.13402.1|Name=mRNA_H-elongata_contig58984.13402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig58984:3300..3458- (Himanthalia elongata Himel1 dioecious)
ACAAAAAGGTGGAACACTTCGTGGAAGCGTTTCTTCATCGAGATGGCTTA
CCAGGCTCAGTACTACATGCTGTACCCGAACTTCTTCAACCAGACGTCCT
TCTCCACCAACTGGCTAGAAGTGGGTCGAGGGAACAGCCGCCACCGCACG
CGTCGATAGACAAAAAGGTGGAACACTTCGTGGAAGCGTTTCTTCATCGA
GATGGCTTACCAGGCTCAGTACTACATGCTGTACCCGAACTTCTTCAACC
AGACGTCCTTCTCCACCAACTGGCTAGAAGTGGGTCGAGGGAACAGCCGC
CACCGCACGCGTCGATAG
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