mRNA_H-elongata_contig58955.13398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58955.13398.1
Unique NamemRNA_H-elongata_contig58955.13398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58955.13398.1 vs. uniprot
Match: D8LQW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQW0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.330e-21
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:  163 SERVRAKRSGLAGARYFFAKWKAWAGRRAAATRMARRVERKGLRRCFLAMAANQLKLRSHLENRRLDTLRAAFSGWRVGLGRILRARL 426
            S   R+  SGLAG R  F +W+AWA RRAAA RMA R     L+RCFLA+A NQL+LR  LE+RR+  L A F GWRVGLGR+LRARL
Sbjct:  780 SALARSALSGLAGTRGRFVRWRAWARRRAAARRMALRAREAWLQRCFLALAGNQLRLRQRLEDRRMAALAAVFQGWRVGLGRLLRARL 867
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58955.13398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQW0_ECTSI3.330e-2161.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58955contigH-elongata_contig58955:731..2156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001770.1
Exons3
Model size426
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58955.13398.1prot_H-elongata_contig58955.13398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58955 731..2156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.0974853-CDS-H-elongata_contig58955:730..8201622930956.0974853-CDS-H-elongata_contig58955:730..820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58955 731..820 +
1691679639.7211835-CDS-H-elongata_contig58955:730..8201691679639.7211835-CDS-H-elongata_contig58955:730..820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58955 731..820 +
1622930956.11733-CDS-H-elongata_contig58955:1345..15511622930956.11733-CDS-H-elongata_contig58955:1345..1551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58955 1346..1551 +
1691679639.7328951-CDS-H-elongata_contig58955:1345..15511691679639.7328951-CDS-H-elongata_contig58955:1345..1551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58955 1346..1551 +
1622930956.1371648-CDS-H-elongata_contig58955:2026..21561622930956.1371648-CDS-H-elongata_contig58955:2026..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58955 2027..2156 +
1691679639.7481105-CDS-H-elongata_contig58955:2026..21561691679639.7481105-CDS-H-elongata_contig58955:2026..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58955 2027..2156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58955.13398.1

>prot_H-elongata_contig58955.13398.1 ID=prot_H-elongata_contig58955.13398.1|Name=mRNA_H-elongata_contig58955.13398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
RSALKAWSGSAKRSAAARRMAVGRLQLSQKAYFFAWRGFAKRNARARELA
LYKCSERVRAKRSGLAGARYFFAKWKAWAGRRAAATRMARRVERKGLRRC
FLAMAANQLKLRSHLENRRLDTLRAAFSGWRVGLGRILRARL
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mRNA from alignment at H-elongata_contig58955:731..2156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58955.13398.1 ID=mRNA_H-elongata_contig58955.13398.1|Name=mRNA_H-elongata_contig58955.13398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig58955:731..2156+ (Himanthalia elongata Himel1 dioecious)
CGTTCGGCGCTCAAGGCGTGGAGTGGATCGGCAAAGAGATCCGCCGCCGC
TCGCCGGATGGCGGTCGGTCGGCTTCAGCTTTCTCAAAAGGTTCGTAAGG
TGCAAAAAGGTAAACAGGCGAAACGGGAACGGGGAGGGCGGGGGTGGGAA
CTCTCATGTGTGTGTGCAGGTGTGTCTTTAAATTTTTAACGTAAGATTAA
GGATGTTTTTTATAGATAAAAAGTGGTGTCAAAATGTCTAAATATATACG
ATATTATATATTCACGTATAGAGTTGTTCACATATGTAAATGTTTGGCAT
ACACCACCAAATGGTGGGAATACATTTGGAGCTGCCTCTTCTCTCGAGGA
TCGTAACTGCCACTCACGGTAAGCACACCAGAGGCAGAACGCCGTGTTAC
CCCCCCCCCCCCCCCCCCCCTACCCTTTTCGCTTCTCCAAAAATAACAAA
AGCAGAGAGAAAACAACCCTGGAGAGTTTTATGTCCTCTTTTTTTTCTAT
TATATAACATGCTGTCGGCAGAGGGTCCATCCCGCTAAAGACGGACAAAC
GTCTACACTTGCGCCAGAGGCGGCATCTCACGATTTGCCTCTGCGGGTTT
CCACCCCCCTGTCAGGCGTATTTTTTTGCCTGGCGAGGTTTTGCCAAGAG
AAACGCTCGCGCCCGAGAGCTCGCCTTGTATAAGTGCAGCGAGAGGGTGC
GGGCTAAACGGAGCGGCCTCGCCGGAGCCCGATATTTCTTTGCAAAATGG
AAGGCGTGGGCGGGGAGGCGAGCTGCGGCCACGAGAATGGCTCGAAGGGT
AGAGAGAAAGGGGCTCCGAAGGTGAGTCTGGGTCTGTCTTATCTGTCGAT
TTTATATTTCTTGCTCTGTCCTATGATTACTTTTCAATACATGCGACTCG
TAATTATTGAAGATAAAAATCGACGCTCGTTATCATGCCCTCAAAGCTCC
CCGGCAGTGTACCGACGGTCCTCTCCTTATATACAAGACTGGAACCGTTC
CTGAAGAAATCACAACCACTCCGACCGACACATAATGTTATGTAACATGT
GCTAAATAATTAGCCCGCGATACCGGCCGGGCTCCTCTCGAGAACCCTTT
GCTGCCGTTTTAAAAAGTTCCTAAAACACCTCGCGCGTGCTGCAGTCGAC
GGATGTGTCAGTCCCCCGGTGTACACTGTACCCTTCGCTTGCTTAGACCA
TTCTTCGAAACATTCCTCAAAATAGATCAAACAGTCCCGACTCGCGCTTG
GTGCGATCGACTTGTGAAGTGACGTCACTTCCCTTCACGTCACCAGGTGT
TTTCTGGCGATGGCGGCGAACCAGCTAAAGCTCCGCTCCCATCTGGAAAA
CCGTCGCTTGGACACCCTTCGCGCCGCGTTCAGCGGCTGGAGAGTGGGGC
TTGGGCGCATCCTACGGGCAAGGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig58955:731..2156+

>mRNA_H-elongata_contig58955.13398.1 ID=mRNA_H-elongata_contig58955.13398.1|Name=mRNA_H-elongata_contig58955.13398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig58955:731..2156+ (Himanthalia elongata Himel1 dioecious)
CGTTCGGCGCTCAAGGCGTGGAGTGGATCGGCAAAGAGATCCGCCGCCGC
TCGCCGGATGGCGGTCGGTCGGCTTCAGCTTTCTCAAAAGCGTTCGGCGC
TCAAGGCGTGGAGTGGATCGGCAAAGAGATCCGCCGCCGCTCGCCGGATG
GCGGTCGGTCGGCTTCAGCTTTCTCAAAAGGCGTATTTTTTTGCCTGGCG
AGGTTTTGCCAAGAGAAACGCTCGCGCCCGAGAGCTCGCCTTGTATAAGT
GCAGCGAGAGGGTGCGGGCTAAACGGAGCGGCCTCGCCGGAGCCCGATAT
TTCTTTGCAAAATGGAAGGCGTGGGCGGGGAGGCGAGCTGCGGCCACGAG
AATGGCTCGAAGGGTAGAGAGAAAGGGGCTCCGAAGGCGTATTTTTTTGC
CTGGCGAGGTTTTGCCAAGAGAAACGCTCGCGCCCGAGAGCTCGCCTTGT
ATAAGTGCAGCGAGAGGGTGCGGGCTAAACGGAGCGGCCTCGCCGGAGCC
CGATATTTCTTTGCAAAATGGAAGGCGTGGGCGGGGAGGCGAGCTGCGGC
CACGAGAATGGCTCGAAGGGTAGAGAGAAAGGGGCTCCGAAGGTGTTTTC
TGGCGATGGCGGCGAACCAGCTAAAGCTCCGCTCCCATCTGGAAAACCGT
CGCTTGGACACCCTTCGCGCCGCGTTCAGCGGCTGGAGAGTGGGGCTTGG
GCGCATCCTACGGGCAAGGCTGGTGTTTTCTGGCGATGGCGGCGAACCAG
CTAAAGCTCCGCTCCCATCTGGAAAACCGTCGCTTGGACACCCTTCGCGC
CGCGTTCAGCGGCTGGAGAGTGGGGCTTGGGCGCATCCTACGGGCAAGGC
TG
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