mRNA_H-elongata_contig5895.13397.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5895.13397.1
Unique NamemRNA_H-elongata_contig5895.13397.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A6H5L6C5_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.220e-19
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            +ALNA VPEGWVTGEGE EY+GL+YY+NEA+G+STWDHPLDEYYR
Sbjct:   56 EALNAKVPEGWVTGEGEGEYEGLVYYYNEATGESTWDHPLDEYYR 100
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: D7G7M1_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.140e-19
Identity = 36/45 (80.00%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            +AL+A+VPEGWVTGEGE EY+GL+YY+NEA+G+STWDHPLDEYYR
Sbjct:   56 EALSAEVPEGWVTGEGEGEYEGLVYYYNEATGESTWDHPLDEYYR 100
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A836CDQ8_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.250e-14
Identity = 29/45 (64.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            +AL+AD+PEGWV+GEGE EY+GL++Y NEA+  STW+HPLD++Y+
Sbjct:   93 EALDADLPEGWVSGEGEGEYEGLLFYFNEATETSTWEHPLDQHYK 137
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: L1IF62_GUITC (WW domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF62_GUITC)

HSP 1 Score: 50.1 bits (118), Expect = 9.540e-7
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            +AL A +PEGW       +  G ++Y+N  SG S+W+HPLDEYYR
Sbjct:   46 EALCAALPEGWSE---HTDANGNVFYYNSVSGVSSWEHPLDEYYR 87
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A7S0VXG9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VXG9_9CRYP)

HSP 1 Score: 49.3 bits (116), Expect = 2.850e-6
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            +AL A +PEGW       +  G ++Y+N  +G S+W+HPLDEYYR
Sbjct:   35 EALCASLPEGWTE---HHDAAGNVFYYNTITGVSSWEHPLDEYYR 76
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: D7FVQ3_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ3_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.940e-6
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            ++L A +PEGW+  + +DE  G  YY+N+ASG S+W+HP D +Y+
Sbjct:   84 ESLLAPLPEGWL--QLKDEQSGHPYYYNQASGDSSWEHPRDSFYK 126
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A8J4WLL2_9TREM (WW domain-containing protein n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4WLL2_9TREM)

HSP 1 Score: 50.8 bits (120), Expect = 4.370e-6
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            + ++A VP+GW   + E+     I+Y+N ASGQS W+HPLDE+YR
Sbjct:   67 EGISAPVPKGWQVLQDEN---NQIFYYNSASGQSLWEHPLDEFYR 108
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A7S0EYU4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EYU4_9CRYP)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-6
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            +AL A +PEGW       +  G ++Y+N  SG S+W+HPLDEYYR
Sbjct:  123 EALCAALPEGWTE---HTDASGNVFYYNSLSGVSSWEHPLDEYYR 164
[Close]
BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A4S2M2M1_OPIFE (WW domain-containing protein n=3 Tax=Opisthorchiidae TaxID=6196 RepID=A0A4S2M2M1_OPIFE)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            + L+A +P GW   + E+     I+Y+N ASGQS W+HPLD YYR
Sbjct:   58 EGLSAPLPRGWQVLQDEN---NQIFYYNNASGQSLWEHPLDSYYR 99
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BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Match: A0A7S1GA04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GA04_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.470e-5
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR 135
            + L A +PE W   +  D  +  IYY N ASG+STWDHP DEYYR
Sbjct:   87 EGLKAPLPENWKPCKTTDTNE--IYYFNFASGESTWDHPCDEYYR 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5895.13397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5L6C5_9PHAE2.220e-1982.22WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G7M1_ECTSI4.140e-1980.00WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CDQ8_9STRA4.250e-1464.44WW domain-containing protein n=1 Tax=Tribonema min... [more]
L1IF62_GUITC9.540e-748.89WW domain-containing protein (Fragment) n=1 Tax=Gu... [more]
A0A7S0VXG9_9CRYP2.850e-646.67Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
D7FVQ3_ECTSI3.940e-646.67WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A8J4WLL2_9TREM4.370e-648.89WW domain-containing protein n=1 Tax=Paragonimus h... [more]
A0A7S0EYU4_9CRYP5.980e-648.89Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A4S2M2M1_OPIFE1.120e-548.89WW domain-containing protein n=3 Tax=Opisthorchiid... [more]
A0A7S1GA04_9STRA1.470e-553.33Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5895contigH-elongata_contig5895:908..1042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7G7M1
Preferred nameCEP164
KEGG koko:K16462
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0097539,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
EggNOG free text desc.cilium assembly
EggNOG OGs28IT0@1,2QR4A@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.0454657-CDS-H-elongata_contig5895:907..10421622930956.0454657-CDS-H-elongata_contig5895:907..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5895 908..1042 +
1691679639.7040892-CDS-H-elongata_contig5895:907..10421691679639.7040892-CDS-H-elongata_contig5895:907..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5895 908..1042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5895.13397.1prot_H-elongata_contig5895.13397.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5895 908..1042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5895.13397.1

>prot_H-elongata_contig5895.13397.1 ID=prot_H-elongata_contig5895.13397.1|Name=mRNA_H-elongata_contig5895.13397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QALNADVPEGWVTGEGEDEYKGLIYYHNEASGQSTWDHPLDEYYR
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mRNA from alignment at H-elongata_contig5895:908..1042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5895.13397.1 ID=mRNA_H-elongata_contig5895.13397.1|Name=mRNA_H-elongata_contig5895.13397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig5895:908..1042+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCTTAACGCAGACGTTCCCGAAGGCTGGGTCACAGGAGAAGGCGA
AGACGAGTATAAGGGGCTTATCTACTACCACAACGAAGCAAGCGGTCAGA
GCACGTGGGACCACCCTCTCGATGAATACTACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig5895:908..1042+

>mRNA_H-elongata_contig5895.13397.1 ID=mRNA_H-elongata_contig5895.13397.1|Name=mRNA_H-elongata_contig5895.13397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig5895:908..1042+ (Himanthalia elongata Himel1 dioecious)
CAGGCCCTTAACGCAGACGTTCCCGAAGGCTGGGTCACAGGAGAAGGCGA
AGACGAGTATAAGGGGCTTATCTACTACCACAACGAAGCAAGCGGTCAGA
GCACGTGGGACCACCCTCTCGATGAATACTACAGGCAGGCCCTTAACGCA
GACGTTCCCGAAGGCTGGGTCACAGGAGAAGGCGAAGACGAGTATAAGGG
GCTTATCTACTACCACAACGAAGCAAGCGGTCAGAGCACGTGGGACCACC
CTCTCGATGAATACTACAGG
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