mRNA_H-elongata_contig5892.13394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5892.13394.1
Unique NamemRNA_H-elongata_contig5892.13394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5892.13394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5892contigH-elongata_contig5892:1762..2516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.7548456-CDS-H-elongata_contig5892:1761..25141622930955.7548456-CDS-H-elongata_contig5892:1761..2514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5892 1762..2514 +
1691679639.623487-CDS-H-elongata_contig5892:1761..25141691679639.623487-CDS-H-elongata_contig5892:1761..2514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5892 1762..2514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5892.13394.1prot_H-elongata_contig5892.13394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5892 1762..2514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5892.13394.1

>prot_H-elongata_contig5892.13394.1 ID=prot_H-elongata_contig5892.13394.1|Name=mRNA_H-elongata_contig5892.13394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
SNFGAVGTKTREYCAQHAAHGMINLSTTKCKAVGCGKYASHGVFRTKTAE
YCKHHAMDGMVNVRHKICTQKGCVKLALFGKDDTREAEYCRQHAMNGMIN
VFHRICIHHFCTNRAFGLAGARKAEYCKQHAPDRTADGHQRGCANENCGT
QSCTQTAEYCARHTPNGMVNVCSNEWTNGGYTKPSSGVNIFKKRYIGPHY
SEGENILNASPAGVKRKGVNHFSYESASSDGSEGSRTRARKLSVASAAST
V
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mRNA from alignment at H-elongata_contig5892:1762..2516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5892.13394.1 ID=mRNA_H-elongata_contig5892.13394.1|Name=mRNA_H-elongata_contig5892.13394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=755bp|location=Sequence derived from alignment at H-elongata_contig5892:1762..2516+ (Himanthalia elongata Himel1 dioecious)
TCGAACTTCGGTGCTGTCGGCACCAAAACGCGGGAATACTGCGCACAGCA
CGCTGCGCACGGGATGATTAACCTTAGCACAACAAAGTGTAAAGCTGTAG
GGTGTGGAAAGTATGCGTCGCACGGTGTGTTCAGGACCAAAACAGCGGAG
TACTGCAAACATCACGCCATGGACGGGATGGTCAACGTCCGTCACAAAAT
ATGTACCCAGAAAGGTTGCGTTAAGTTGGCACTGTTCGGCAAAGACGACA
CCAGAGAGGCGGAGTACTGTAGACAGCACGCCATGAACGGGATGATCAAC
GTTTTTCACAGAATTTGCATCCACCATTTTTGCACCAATCGGGCATTTGG
CTTGGCTGGTGCCAGAAAAGCCGAATACTGCAAGCAGCACGCCCCTGATA
GGACGGCAGATGGTCATCAAAGGGGTTGTGCCAACGAAAACTGCGGAACG
CAGTCGTGCACGCAAACGGCGGAGTATTGCGCACGGCACACCCCGAACGG
GATGGTCAACGTCTGCAGTAATGAATGGACCAACGGAGGCTACACCAAGC
CAAGTTCCGGTGTAAATATATTCAAGAAGCGATATATTGGCCCACACTAC
TCTGAGGGGGAAAATATTTTGAACGCGAGCCCAGCAGGCGTAAAACGGAA
AGGCGTTAATCATTTTTCCTATGAAAGCGCTTCTTCGGACGGTAGCGAGG
GTTCTCGAACGCGAGCACGGAAGCTATCCGTTGCGTCTGCGGCTTCGACG
GTAGT
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Coding sequence (CDS) from alignment at H-elongata_contig5892:1762..2516+

>mRNA_H-elongata_contig5892.13394.1 ID=mRNA_H-elongata_contig5892.13394.1|Name=mRNA_H-elongata_contig5892.13394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig5892:1762..2516+ (Himanthalia elongata Himel1 dioecious)
TCGAACTTCGGTGCTGTCGGCACCAAAACGCGGGAATACTGCGCACAGCA
CGCTGCGCACGGGATGATTAACCTTAGCACAACAAAGTGTAAAGCTGTAG
GGTGTGGAAAGTATGCGTCGCACGGTGTGTTCAGGACCAAAACAGCGGAG
TACTGCAAACATCACGCCATGGACGGGATGGTCAACGTCCGTCACAAAAT
ATGTACCCAGAAAGGTTGCGTTAAGTTGGCACTGTTCGGCAAAGACGACA
CCAGAGAGGCGGAGTACTGTAGACAGCACGCCATGAACGGGATGATCAAC
GTTTTTCACAGAATTTGCATCCACCATTTTTGCACCAATCGGGCATTTGG
CTTGGCTGGTGCCAGAAAAGCCGAATACTGCAAGCAGCACGCCCCTGATA
GGACGGCAGATGGTCATCAAAGGGGTTGTGCCAACGAAAACTGCGGAACG
CAGTCGTGCACGCAAACGGCGGAGTATTGCGCACGGCACACCCCGAACGG
GATGGTCAACGTCTGCAGTAATGAATGGACCAACGGAGGCTACACCAAGC
CAAGTTCCGGTGTAAATATATTCAAGAAGCGATATATTGGCCCACACTAC
TCTGAGGGGGAAAATATTTTGAACGCGAGCCCAGCAGGCGTAAAACGGAA
AGGCGTTAATCATTTTTCCTATGAAAGCGCTTCTTCGGACGGTAGCGAGG
GTTCTCGAACGCGAGCACGGAAGCTATCCGTTGCGTCTGCGGCTTCGACG
GTATCGAACTTCGGTGCTGTCGGCACCAAAACGCGGGAATACTGCGCACA
GCACGCTGCGCACGGGATGATTAACCTTAGCACAACAAAGTGTAAAGCTG
TAGGGTGTGGAAAGTATGCGTCGCACGGTGTGTTCAGGACCAAAACAGCG
GAGTACTGCAAACATCACGCCATGGACGGGATGGTCAACGTCCGTCACAA
AATATGTACCCAGAAAGGTTGCGTTAAGTTGGCACTGTTCGGCAAAGACG
ACACCAGAGAGGCGGAGTACTGTAGACAGCACGCCATGAACGGGATGATC
AACGTTTTTCACAGAATTTGCATCCACCATTTTTGCACCAATCGGGCATT
TGGCTTGGCTGGTGCCAGAAAAGCCGAATACTGCAAGCAGCACGCCCCTG
ATAGGACGGCAGATGGTCATCAAAGGGGTTGTGCCAACGAAAACTGCGGA
ACGCAGTCGTGCACGCAAACGGCGGAGTATTGCGCACGGCACACCCCGAA
CGGGATGGTCAACGTCTGCAGTAATGAATGGACCAACGGAGGCTACACCA
AGCCAAGTTCCGGTGTAAATATATTCAAGAAGCGATATATTGGCCCACAC
TACTCTGAGGGGGAAAATATTTTGAACGCGAGCCCAGCAGGCGTAAAACG
GAAAGGCGTTAATCATTTTTCCTATGAAAGCGCTTCTTCGGACGGTAGCG
AGGGTTCTCGAACGCGAGCACGGAAGCTATCCGTTGCGTCTGCGGCTTCG
ACGGTA
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