mRNA_H-elongata_contig5892.13393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5892.13393.1
Unique NamemRNA_H-elongata_contig5892.13393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5892.13393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5892contigH-elongata_contig5892:487..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size207
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.8053632-UTR-H-elongata_contig5892:486..6751622930955.8053632-UTR-H-elongata_contig5892:486..675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5892 487..675 +
1691679639.6326618-UTR-H-elongata_contig5892:486..6751691679639.6326618-UTR-H-elongata_contig5892:486..675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5892 487..675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.8226051-CDS-H-elongata_contig5892:675..8821622930955.8226051-CDS-H-elongata_contig5892:675..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5892 676..882 +
1691679639.6416578-CDS-H-elongata_contig5892:675..8821691679639.6416578-CDS-H-elongata_contig5892:675..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5892 676..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5892.13393.1prot_H-elongata_contig5892.13393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5892 676..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5892.13393.1

>prot_H-elongata_contig5892.13393.1 ID=prot_H-elongata_contig5892.13393.1|Name=mRNA_H-elongata_contig5892.13393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MDGMINLYNTKCKVIGCANVPSFGVSGSRKAEYCSGHKIDGMVTIRYQIC
THKGCTKVPVFGMAGTKTR
back to top

mRNA from alignment at H-elongata_contig5892:487..882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5892.13393.1 ID=mRNA_H-elongata_contig5892.13393.1|Name=mRNA_H-elongata_contig5892.13393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig5892:487..882+ (Himanthalia elongata Himel1 dioecious)
TTTTACGCTGAAGCATTTGCAGTAGCCAAGTCACACTCTAGGCGTGCCGC
CTGGCCCACGAGAGGGAAGTAGGCTTGCGATTAAAATTTTTCACCCAAAC
TAGGTACGGTCCTCCTGAGAGTATAGCCGTCCAGTTTGTTGTTCGGCGTG
GTCGGCACAAAAACGGCAGAGTTCTGCAGACAGCACGCCATGGACGGGAT
GATCAACCTCTACAACACAAAGTGTAAAGTCATAGGGTGCGCTAACGTCC
CGTCGTTCGGCGTGTCCGGTTCGAGAAAGGCGGAGTACTGCTCAGGGCAC
AAAATTGACGGGATGGTCACGATCAGGTACCAGATCTGTACCCACAAAGG
CTGCACCAAGGTCCCGGTGTTCGGTATGGCCGGTACAAAAACGCGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5892:487..882+

>mRNA_H-elongata_contig5892.13393.1 ID=mRNA_H-elongata_contig5892.13393.1|Name=mRNA_H-elongata_contig5892.13393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig5892:487..882+ (Himanthalia elongata Himel1 dioecious)
ATGGACGGGATGATCAACCTCTACAACACAAAGTGTAAAGTCATAGGGTG
CGCTAACGTCCCGTCGTTCGGCGTGTCCGGTTCGAGAAAGGCGGAGTACT
GCTCAGGGCACAAAATTGACGGGATGGTCACGATCAGGTACCAGATCTGT
ACCCACAAAGGCTGCACCAAGGTCCCGGTGTTCGGTATGGCCGGTACAAA
AACGCGGATGGACGGGATGATCAACCTCTACAACACAAAGTGTAAAGTCA
TAGGGTGCGCTAACGTCCCGTCGTTCGGCGTGTCCGGTTCGAGAAAGGCG
GAGTACTGCTCAGGGCACAAAATTGACGGGATGGTCACGATCAGGTACCA
GATCTGTACCCACAAAGGCTGCACCAAGGTCCCGGTGTTCGGTATGGCCG
GTACAAAAACGCGG
back to top