mRNA_H-elongata_contig58869.13387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58869.13387.1
Unique NamemRNA_H-elongata_contig58869.13387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A6H5JUN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN5_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.520e-34
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            QDHYDWGMRAVKS+L+VAGKL+RAEP  PED L +RALRDF  PKI+HSDEAVF GLL DLFPS +PPRLVN +LN CV
Sbjct:  553 QDHYDWGMRAVKSVLVVAGKLKRAEPDLPEDSLLMRALRDFNTPKIVHSDEAVFFGLLNDLFPSINPPRLVNDSLNACV 631
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: D7FW50_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW50_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.530e-34
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            QDHYDWGMRAVKS+L+VAGKL+RAEP  PED L +RALRDF  PKI+HSDEAVF GLL DLFPS +PPRLVN +LN CV
Sbjct: 1557 QDHYDWGMRAVKSVLVVAGKLKRAEPDLPEDSLLMRALRDFNTPKIVHSDEAVFFGLLNDLFPSINPPRLVNDSLNACV 1635
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: F0YNI2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNI2_AURAN)

HSP 1 Score: 116 bits (290), Expect = 1.820e-28
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            Q HYDWG+RAVKS+L+VAG L+RAEP  PE+ L +RALRDF IPKI+  DE VF GLL DLFP  DPPR+V+ +L  C+
Sbjct:  967 QSHYDWGLRAVKSVLVVAGHLKRAEPGLPEEQLLMRALRDFNIPKIVQQDEVVFFGLLNDLFPGVDPPRVVDVSLTRCI 1045
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A482ST18_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST18_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 2.470e-28
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            Q HYDWG+RAVKS+L+VAG+L+RAEPS  ED L +RALRDF IPKI+ +DE VF GLL DLFP  +PPR+ +  L++CV
Sbjct:  431 QSHYDWGLRAVKSVLVVAGQLKRAEPSLDEDALLMRALRDFNIPKIVQADEVVFFGLLNDLFPGLNPPRVFDEALSECV 509
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A5J4WSV7_9EUKA (Putative Dynein beta chain, ciliary n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WSV7_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 2.320e-25
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            QDHYDWG+RA+KS+L+VAG L+RA+P FPE+ + +RALRDF +PKII  D  VF+GL+ DLFP    PR VN  L   +
Sbjct:  654 QDHYDWGLRAIKSVLVVAGSLKRADPDFPEETILMRALRDFNLPKIITEDVEVFMGLIGDLFPKTSVPRKVNRQLESSI 732
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A6G0X3R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3R1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.330e-25
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            Q+HYDWG+RA+KSILL+ G L+R EPS  E  L +RALRDF IPK++  D+ +FLGLL DLFP   PPR VN NL   +
Sbjct: 1515 QEHYDWGLRAIKSILLITGTLKRNEPSLSESQLLLRALRDFNIPKLVAQDQPIFLGLLHDLFPETPPPRKVNQNLEKHI 1593
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: D7FRX0_ECTSI (Dynein heavy chain family dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.910e-25
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            Q HYDWG+RAVKS+L+VAG  +RAEP   ED L +RALRDF IPKI+  DE VF GLL DLFP  +PPR V+  L   V
Sbjct: 1333 QMHYDWGLRAVKSVLVVAGAFKRAEPELAEDALLMRALRDFNIPKIVREDEVVFFGLLGDLFPGQNPPRKVDEELEHFV 1411
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A2H1CTL7_FASHE (AAA_6 domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CTL7_FASHE)

HSP 1 Score: 99.4 bits (246), Expect = 7.870e-25
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVN 216
            QDHYDWG+RA+KS+L+VAG L+R  P   ED + +RALRDF IPK++  D AVFLGL+ DLFP+ D PR  N
Sbjct:   43 QDHYDWGLRAIKSVLVVAGALKRGNPEHSEDSVLMRALRDFNIPKLVTEDMAVFLGLISDLFPNLDAPRKRN 114
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A485LTF1_9STRA (Aste57867_25292 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTF1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.070e-25
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    1 QDHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPRLVNHNLNDCV 237
            Q+HYDWG+RA+KSILL+ G L+R+EP+  E  L +RALRDF +PK++  D+ +F GLL DLFP P PPR VN NL   +
Sbjct: 1530 QEHYDWGLRAIKSILLITGSLKRSEPTLSESQLLLRALRDFNVPKLVLQDQPIFHGLLHDLFPEPPPPRKVNANLEKHI 1608
[Close]
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Match: A0A401QI77_SCYTO (AAA_6 domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI77_SCYTO)

HSP 1 Score: 97.8 bits (242), Expect = 1.090e-24
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 DHYDWGMRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGLLKDLFPSPDPPR 207
            DHYDWG+RA+KS+L+VAG L+R +P  PED + +RALRDF IPKI+  D  +F+GL+ DLFP+ D PR
Sbjct:   20 DHYDWGLRAIKSVLVVAGSLKRGDPGRPEDQVLMRALRDFNIPKIVTDDMPIFMGLISDLFPALDVPR 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58869.13387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUN5_9PHAE1.520e-3477.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW50_ECTSI1.530e-3477.22Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
F0YNI2_AURAN1.820e-2864.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482ST18_9ARCH2.470e-2864.56Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A5J4WSV7_9EUKA2.320e-2558.23Putative Dynein beta chain, ciliary n=1 Tax=Strebl... [more]
A0A6G0X3R1_9STRA4.330e-2559.49Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D7FRX0_ECTSI5.910e-2562.03Dynein heavy chain family dynein heavy chain n=1 T... [more]
A0A2H1CTL7_FASHE7.870e-2561.11AAA_6 domain-containing protein n=1 Tax=Fasciola h... [more]
A0A485LTF1_9STRA8.070e-2556.96Aste57867_25292 protein n=1 Tax=Aphanomyces stella... [more]
A0A401QI77_SCYTO1.090e-2460.29AAA_6 domain-containing protein (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58869contigH-elongata_contig58869:1145..1704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7FW50
Preferred nameODA-DHCA
KEGG koko:K10408,ko:K10706,ko:K20285
KEGG Pathwayko05016,map05016
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGsCOG5245@1,KOG1230@1,KOG1230@2759,KOG3595@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58869.13387.1prot_H-elongata_contig58869.13387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58869 1145..1683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.197807-CDS-H-elongata_contig58869:1144..12281622930955.197807-CDS-H-elongata_contig58869:1144..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58869 1145..1228 -
1691679639.3307295-CDS-H-elongata_contig58869:1144..12281691679639.3307295-CDS-H-elongata_contig58869:1144..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58869 1145..1228 -
1622930955.2166667-CDS-H-elongata_contig58869:1551..16831622930955.2166667-CDS-H-elongata_contig58869:1551..1683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58869 1552..1683 -
1691679639.3519166-CDS-H-elongata_contig58869:1551..16831691679639.3519166-CDS-H-elongata_contig58869:1551..1683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58869 1552..1683 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.2334063-UTR-H-elongata_contig58869:1683..17041622930955.2334063-UTR-H-elongata_contig58869:1683..1704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58869 1684..1704 -
1691679639.3628788-UTR-H-elongata_contig58869:1683..17041691679639.3628788-UTR-H-elongata_contig58869:1683..1704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58869 1684..1704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58869.13387.1

>prot_H-elongata_contig58869.13387.1 ID=prot_H-elongata_contig58869.13387.1|Name=mRNA_H-elongata_contig58869.13387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MRAVKSILLVAGKLRRAEPSFPEDLLFVRALRDFTIPKIIHSDEAVFLGL
LKDLFPSPDPPRLVNHNLNDCV
back to top

mRNA from alignment at H-elongata_contig58869:1145..1704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58869.13387.1 ID=mRNA_H-elongata_contig58869.13387.1|Name=mRNA_H-elongata_contig58869.13387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at H-elongata_contig58869:1145..1704- (Himanthalia elongata Himel1 dioecious)
CAGGACCACTACGACTGGGGAATGCGAGCGGTCAAGTCGATTTTGTTAGT
AGCAGGGAAACTTAGGCGCGCGGAGCCAAGCTTCCCGGAAGACTTACTCT
TCGTGAGAGCTCTCCGAGATTTCACCATCCCCAAGATTATCCACAGCGAC
GAGGTGCAAATGCACCGATGCGACGGTATACCCCACCGTTGAGGAGGTTG
CGTCCTTCAAACCCATCGGTAAACTGTAGTCTGGCTATATCTGGACACGT
TTAGAGTATTGCCCAACCCCCTTGGCCCTCACGCAACCAAATAACTACTG
TATCCAACCAACTACTGTATCCAAGTGGGTCCTACCCATCTGACTAGGCG
TTGAGAAGGTATTATTTCGTCGCACTCCGATAGTTCGATATCATCCGATC
CGACCCGGCTCAAATCGACTCGACCCGACTCGACCCGACTCGACCCGCCT
GCCTTGAACTTTGGGGTGATCTGCAGGCCGTGTTCTTGGGTCTGCTGAAG
GACTTGTTCCCGTCCCCCGACCCTCCAAGGCTGGTCAATCATAACCTCAA
TGACTGCGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig58869:1145..1704-

>mRNA_H-elongata_contig58869.13387.1 ID=mRNA_H-elongata_contig58869.13387.1|Name=mRNA_H-elongata_contig58869.13387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig58869:1145..1704- (Himanthalia elongata Himel1 dioecious)
ATGCGAGCGGTCAAGTCGATTTTGTTAGTAGCAGGGAAACTTAGGCGCGC
GGAGCCAAGCTTCCCGGAAGACTTACTCTTCGTGAGAGCTCTCCGAGATT
TCACCATCCCCAAGATTATCCACAGCGACGAGATGCGAGCGGTCAAGTCG
ATTTTGTTAGTAGCAGGGAAACTTAGGCGCGCGGAGCCAAGCTTCCCGGA
AGACTTACTCTTCGTGAGAGCTCTCCGAGATTTCACCATCCCCAAGATTA
TCCACAGCGACGAGGCCGTGTTCTTGGGTCTGCTGAAGGACTTGTTCCCG
TCCCCCGACCCTCCAAGGCTGGTCAATCATAACCTCAATGACTGCGTGGC
CGTGTTCTTGGGTCTGCTGAAGGACTTGTTCCCGTCCCCCGACCCTCCAA
GGCTGGTCAATCATAACCTCAATGACTGCGTG
back to top