mRNA_H-elongata_contig58834.13384.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: D8LST5_ECTSI (DNA-binding protein HU n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST5_ECTSI) HSP 1 Score: 115 bits (287), Expect = 3.270e-27 Identity = 57/87 (65.52%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 1 VRKPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKE 261
+RKP VV + ER+ L+K QAEAA+ AFT+ ++ V+DGNKI+LQGFGTFE R R GR GRNPRTGE ++IKATT PAFSASK FK+
Sbjct: 67 LRKPAVVEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASKAFKD 153
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A835Z9S8_9STRA (DNA-binding protein HU n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S8_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.700e-23 Identity = 48/91 (52.75%), Postives = 71/91 (78.02%), Query Frame = 1
Query: 1 VRKPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQERE 273
++K VA + ++GL+KTQ +AA+ AF +T+++ V+DG K++L GFGTFESR+RA RQGRNP+TGE + I A+ PAFSA+K FK++ +E
Sbjct: 1 MKKADFVASISAKSGLSKTQTDAAISAFMDTVMEAVADGKKVSLVGFGTFESRERAARQGRNPQTGEALSIPASKAPAFSAAKAFKDRVKE 91
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A6L5GQ70_9FIRM (HU family DNA-binding protein n=3 Tax=Eubacteriaceae TaxID=186806 RepID=A0A6L5GQ70_9FIRM) HSP 1 Score: 97.8 bits (242), Expect = 1.310e-21 Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 7 KPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKE 261
K Q+VA + E++GL+K ++E A+ AFTE+IV+ + G+K++L GFGTF+ R RA RQG NPRT EPIEIKA+ PAF A K FK+
Sbjct: 3 KTQLVASISEKSGLSKKESEKALSAFTESIVEALQKGDKVSLVGFGTFDVRHRAARQGLNPRTKEPIEIKASNAPAFKAGKAFKD 87
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: E6MGM2_9FIRM (DNA-binding protein HU n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 TaxID=887929 RepID=E6MGM2_9FIRM) HSP 1 Score: 97.4 bits (241), Expect = 1.870e-21 Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 7 KPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKE 261
K ++VA M E+ GL K AE A+ AFT+TIV+ + G+K++L GFGTF+ R RA RQG NPRT EPIEIKA+ PAF A K FK+
Sbjct: 3 KSELVAAMAEKTGLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQGLNPRTKEPIEIKASDAPAFKAGKAFKD 87
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: UPI001A0860CC (HU family DNA-binding protein n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A0860CC) HSP 1 Score: 96.3 bits (238), Expect = 7.230e-21 Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 13 QVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQERENQAHRLSIAPPPPSDT 321
++V + ++ + K +A+A V A +TI+D VS GNK+ L GFGTFE+R R R+GRNP+TGE I I ATTVPAFSA K FKE +APP P T
Sbjct: 5 ELVDAIAQKVSVTKKEADAIVGAMVDTIMDTVSSGNKVTLVGFGTFEARNRQAREGRNPKTGEAIAIPATTVPAFSAGKQFKEM----------VAPPAPKAT 97
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A7S2W3F4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W3F4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 9.950e-21 Identity = 47/88 (53.41%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 1 VRKPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 264
VRKPQ+VA++ E+ G+ K ++AA+ A E+IV+ VS GNK+++ GFGTF+ RA R+GRNP+TGE I+IKA+ PAF+ K FKE+
Sbjct: 49 VRKPQLVAKIAEKTGMTKADSDAALAAVLESIVEEVSAGNKVSMIGFGTFKLTSRAARKGRNPKTGETIDIKASNRPAFTVGKAFKER 136
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A4R3Z7K3_9FIRM (DNA-binding protein HU-beta n=3 Tax=Erysipelotrichaceae TaxID=128827 RepID=A0A4R3Z7K3_9FIRM) HSP 1 Score: 95.1 bits (235), Expect = 1.380e-20 Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 7 KPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFK 258
K ++V ++ E AGL KTQAEAA+ AF ETI D + G+KI L+GFGTFE RQR R+GRNPRTGE + I A+ PAF AS K
Sbjct: 3 KTELVEKVAESAGLTKTQAEAAINAFVETITDGLKAGDKITLKGFGTFEVRQREAREGRNPRTGETMTIAASKAPAFKASSALK 86
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: K9U4A1_CHRTP (Bacterial nucleoid protein Hbs n=3 Tax=Chroococcidiopsis TaxID=54298 RepID=K9U4A1_CHRTP) HSP 1 Score: 95.1 bits (235), Expect = 1.460e-20 Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 7 KPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 264
K ++V + E+A + K QA+A + A ETI+D VS G+K+ L GFG+FESR+R R+GRNP+TG+ +EI AT VPAFSA K FKE+
Sbjct: 3 KGELVDSIAEKASVTKKQADAVLTAALETIIDAVSTGDKVTLVGFGSFESRERKAREGRNPKTGDKMEIPATKVPAFSAGKLFKEK 88
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: UPI000349D0E7 (HU family DNA-binding protein n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI000349D0E7) HSP 1 Score: 95.1 bits (235), Expect = 1.460e-20 Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 7 KPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 264
K ++V + ++A +NK QA+ + A E IVD VS GNK+ L GFG+FE R+R R+GRNP+TG+ +EI ATTVPAFSA K+F+E+
Sbjct: 3 KGELVDAIAKKASVNKKQADEVLTATLEVIVDAVSSGNKVTLVGFGSFEPRERKAREGRNPKTGDKMEIPATTVPAFSAGKSFRER 88
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Match: A0A7S1Y344_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y344_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.530e-20 Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 1 VRKPQVVAEMMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQGRNPRTGEPIEIKATTVPAFSASKNFKEQ 264
VRKP +V + ER G +K+++ A+ A +TI++ V+DG K+NLQGFGTF+ +R R GRNP+TGE +EIKA+ P+FSA+K FKE+
Sbjct: 66 VRKPALVEMVAERMGTSKSESTQAIEAVVDTIMEVVADGKKLNLQGFGTFKLSERKARTGRNPKTGESLEIKASKTPSFSAAKGFKEK 153 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58834.13384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58834.13384.1 >prot_H-elongata_contig58834.13384.1 ID=prot_H-elongata_contig58834.13384.1|Name=mRNA_H-elongata_contig58834.13384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp MMERAGLNKTQAEAAVVAFTETIVDFVSDGNKINLQGFGTFESRQRAGRQback to top mRNA from alignment at H-elongata_contig58834:197..2050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58834.13384.1 ID=mRNA_H-elongata_contig58834.13384.1|Name=mRNA_H-elongata_contig58834.13384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1854bp|location=Sequence derived from alignment at H-elongata_contig58834:197..2050- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58834:197..2050- >mRNA_H-elongata_contig58834.13384.1 ID=mRNA_H-elongata_contig58834.13384.1|Name=mRNA_H-elongata_contig58834.13384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig58834:197..2050- (Himanthalia elongata Himel1 dioecious)back to top |