mRNA_H-elongata_contig58832.13383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58832.13383.1
Unique NamemRNA_H-elongata_contig58832.13383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: D7G419_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G419_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 3.550e-134
Identity = 180/240 (75.00%), Postives = 207/240 (86.25%), Query Frame = 1
Query:    1 VAAKDTKDYHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            V  K    YHLRGVNLGSWMVLEPWITPSMFFQFLGK+  +EG     +GMDMYTFCQALGPEEGNKQL+RHW+TWV + DIA LAT GV+TIRLPVGDWMYQPYGPYVGCT+GAL+EVDRL DLCRRY IRVLLDIHA+A SQNG DNSGQ+MD+EWTT+SG+  + TATFVHWP R+ARWMGD++R+ G Y+ K+ +++  TL VIQTMVDLYANE+ VMGL+PVNEPWQFTPI+WLK
Sbjct:   60 VNIKAANGYHLRGVNLGSWMVLEPWITPSMFFQFLGKEVTSEGEGSSQIGMDMYTFCQALGPEEGNKQLKRHWQTWVTEEDIAQLATVGVNTIRLPVGDWMYQPYGPYVGCTDGALEEVDRLFDLCRRYGIRVLLDIHAIANSQNGFDNSGQAMDIEWTTYSGNAVSGTATFVHWPYRAARWMGDWDRAAGEYTSKNESAIEFTLKVIQTMVDLYANETAVMGLQPVNEPWQFTPIDWLK 299          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A836CHB0_9STRA (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB0_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.550e-106
Identity = 149/241 (61.83%), Postives = 186/241 (77.18%), Query Frame = 1
Query:   25 YHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEG---------NDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            Y +R VNLGSW+VLEPWITP++FFQFLGK+  A G         + ++ VGMDMY+FC ALGP+EGN+QLR HW +WV + DIA LAT G++TIRLPVGDWMY+PYGPYVGCT+GAL++V+RL  L   Y+I +LLDIHA+ GSQNG DNSG+S+++EWTT S +  A  ATFVHWP RSA WMG F+  T TY +K+ A + HTL VI+ MVD+Y     V+G+EPVNEPWQFTP+ WLK
Sbjct:   80 YKIRAVNLGSWLVLEPWITPTLFFQFLGKEVEAAGVPGESPHGASTQDSVGMDMYSFCLALGPDEGNRQLRAHWDSWVTETDIAQLATMGINTIRLPVGDWMYKPYGPYVGCTDGALEQVERLFWLAHHYNIGILLDIHAVQGSQNGFDNSGRSLNLEWTTFSSTKVAGAATFVHWPYRSANWMGTFDPHTATYVDKNEAHLQHTLDVIRIMVDMYKFVPSVIGIEPVNEPWQFTPVKWLK 320          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S2R252_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R252_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.030e-95
Identity = 135/231 (58.44%), Postives = 166/231 (71.86%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +RGVNLG W+VLEPWITPS+F+QFLG D+           +D+Y+FC+ LGPEEGNKQLRRHW TWV +  I  LA+SG V+++RLPVGDWMY+PYGPY+GCT+GALD VD LLD      I VL+DIH + GSQNG DNSGQ   +EWT+   +  A   TF HWP+RSA WMGDF+R T +Y+  +   + H L  IQ +VD Y N   V+GLEPVNEPWQFTP+  LK
Sbjct:   59 IRGVNLGGWLVLEPWITPSLFYQFLGGDENT-------TALDIYSFCEVLGPEEGNKQLRRHWDTWVTEDIIESLASSGAVNSLRLPVGDWMYKPYGPYIGCTDGALDYVDYLLDWAHSRGISVLIDIHGVKGSQNGFDNSGQCQGMEWTSQLNTEPAGLVTFEHWPIRSANWMGDFDRETTSYTNINYKQIQHALDTIQVIVDKYKNHPAVLGLEPVNEPWQFTPLKELK 282          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S3QGF9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QGF9_9STRA)

HSP 1 Score: 295 bits (756), Expect = 3.850e-92
Identity = 133/231 (57.58%), Postives = 174/231 (75.32%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +RGVNLG WMVLEPWITPS+F+QFLGKD+       E  GMD ++FC+ALGPEEGNKQLRRHW+TWV +  I +L  SG V+++RLPVGDWMY+PYGPY+GCT+GALD VD++LD    Y + VL DIHA+ GSQNG DNSG +   +WT+      +   TF HWP+RSA W+G F+R T TY++ D+ ++ H+L VI+ MV+ Y +   V+GL+PVNEPW++TPI+ LK
Sbjct:   69 IRGVNLGGWMVLEPWITPSLFYQFLGKDE-------EHTGMDQFSFCEALGPEEGNKQLRRHWETWVTEEIIKELKDSGAVNSLRLPVGDWMYKPYGPYIGCTDGALDYVDKVLDWAYEYGLNVLFDIHAMRGSQNGFDNSGDAQGFKWTSKITEQVSTDVTFEHWPIRSAGWVGTFDRVTATYTDIDHDNIQHSLDVIEIMVEKYKDHPAVLGLQPVNEPWEWTPIDVLK 292          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S2WMK6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMK6_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.620e-91
Identity = 133/230 (57.83%), Postives = 170/230 (73.91%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +RGV++G W+VLEPWITPS+F+QFLG D+       E   MDMY+FCQ LGPEEGNKQLRRHW TWV +  I +LA +G++++RLPVGDWMY+PYGPYVGCT+GALD+VD LLD   ++ + VLLD+H + GSQNG DNSGQS  + WT+   +   +  TFVHWP+RSA W+G F+ STG YS  +   +A TL VI  +VD Y     V+GLEPVNEPW+ TP++ LK
Sbjct:   16 VRGVSIGGWLVLEPWITPSLFYQFLGADE-------EHTAMDMYSFCQVLGPEEGNKQLRRHWDTWVTEAIIDELAAAGINSLRLPVGDWMYEPYGPYVGCTDGALDKVDWLLDQAAKHKLSVLLDLHGVIGSQNGFDNSGQSSSLVWTSILSTKPIQAVTFVHWPIRSAGWIGTFD-STGFYSSINREHIAMTLRVITAIVDRYHTHPSVLGLEPVNEPWELTPLDILK 237          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S1ZG04_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZG04_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.770e-91
Identity = 137/231 (59.31%), Postives = 168/231 (72.73%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +RGVNLGSWMVLEPWITPSMF+QFLG D+        +  MDMY+FC+ LGPEEGNKQLRRHW TWV +  I +LA SG V+++RLPVGDWMY+PYGPY+GCT+GALD VD LLD      + VL DIH + GSQNG DNSGQS D EWT+   +  A   TF HW +RSA WMG+F+R T  Y+  +  ++ H L  IQ +V++Y     V+GLEPVNEPWQ+TPI+ LK
Sbjct:   74 IRGVNLGSWMVLEPWITPSMFYQFLGGDET-------NTAMDMYSFCEILGPEEGNKQLRRHWDTWVTEELIEELAQSGAVNSLRLPVGDWMYKPYGPYIGCTDGALDYVDDLLDWAHARGLTVLFDIHGVKGSQNGFDNSGQSQDFEWTSALNTEPAGLVTFQHWGIRSAAWMGEFDRETIEYTSTNYENIEHALETIQEIVNMYKGHPAVLGLEPVNEPWQYTPIDELK 297          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A2P4XCM2_9STRA (Glucan 1,3-beta-glucosidase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XCM2_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.040e-91
Identity = 121/230 (52.61%), Postives = 165/230 (71.74%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +RG NLG W+VLEPWITP++F+QFL   +       E   MDMYTFC ALG EE N+QLR HW TWV + D+ ++A +GV+++R+PVGDWM+ PY PY+GCT+GA++E+DR+ +L  +Y+I +LLDIH L GSQNG DNSG +  V+WT+ + +    T TF HWPLRSA W G+FN +T TY   +   + H+L  +  +V+ YAN   ++GLEPVNEPW+ TPI+ LK
Sbjct:   85 VRGANLGGWLVLEPWITPTLFYQFLSTQERFGDKAPEKTAMDMYTFCTALGKEEANRQLRIHWATWVTEADLKEMAEAGVNSLRVPVGDWMFNPYEPYIGCTDGAVNELDRVANLALKYNIDLLLDIHGLIGSQNGFDNSGMASSVKWTSIASTRPIGTTTFEHWPLRSAGWAGEFNSTTNTYKSINYEHLNHSLATVAAIVNRYANHPAIIGLEPVNEPWELTPIDLLK 314          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7R9W2B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2B8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 1.050e-90
Identity = 127/230 (55.22%), Postives = 167/230 (72.61%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWL 717
            +RGVNLG W+VLEPWITPS+F+QFL      EGN+   V MD Y+FC+ LGPEEGNKQL+RHW TWV +  I +LA SG V+++RLPVGDWMY+PYGPY+GCT+GA + V+ +LD    Y + VL+D+H L GSQNG DNSGQSM+++WT+          TF HWP+R+A WMG+FN +T  Y E +  ++ H L V++ +V ++A    V+GLEPVNEPW+ TPI  L
Sbjct:   87 IRGVNLGGWLVLEPWITPSLFYQFL------EGNETS-VAMDHYSFCEVLGPEEGNKQLKRHWDTWVTEEHIKELAESGAVNSLRLPVGDWMYKPYGPYIGCTDGANEYVENVLDWASEYGLSVLIDVHGLKGSQNGFDNSGQSMNMQWTSSINKYPRGLTTFQHWPIRNAGWMGEFNVTTLEYPEINRENIQHALDVLEEIVKMFAGHPAVLGLEPVNEPWEHTPIKEL 309          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A8J6C6R7_DIALT (X8 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C6R7_DIALT)

HSP 1 Score: 292 bits (748), Expect = 1.060e-90
Identity = 133/232 (57.33%), Postives = 174/232 (75.00%), Query Frame = 1
Query:   31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWT--THSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +RGVNLG W+VLEPWITPS+F+QFLG D+       + VGMDM+TFC+ALGPEEGN+QLRRHWK+WV + DI  L +  +DT+R+PVGDWM++PYGPYV CT GAL+E+DR+L LC +Y ++VLLDIHA+ GSQNGLDNSG+S +V WT  T S + E +  TF HW  R A W+GDF   + +YS  + A +  TL V++ + D YA+   VMG++P+NEPW FTP+  LK
Sbjct:  109 IRGVNLGGWLVLEPWITPSLFYQFLGADERWGDETAKKVGMDMWTFCEALGPEEGNRQLRRHWKSWVGEEDIRTLFSLNLDTLRIPVGDWMWRPYGPYVNCTAGALEELDRVLALCGKYGLKVLLDIHAVEGSQNGLDNSGRSTEVRWTANTFSDAPEMQGRTFSHWSSRKAEWIGDFEIESLSYSSINWARIDATLDVVRMIADQYAHNGAVMGVQPLNEPWLFTPLGPLK 340          
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A0M0J8Y9_9EUKA (Glucan-beta n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8Y9_9EUKA)

HSP 1 Score: 286 bits (731), Expect = 1.620e-90
Identity = 124/235 (52.77%), Postives = 169/235 (71.91%), Query Frame = 1
Query:   19 KDYHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWT-THSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
            +D+ + G NLG W+VLEPWITPS+F+QFL  D+    +  +  GMD YTFC ALGP EGNKQ+RRHW+ WVR+ DIA +A +G + +R+PVGDW + PYGPY+GC +GA DE+ R+LDLC +Y I+ LLDIHA+ GSQNG DNSGQ++ V+WT   S + +    TF HWP+RSA W G F  S+ +YS  ++ ++  TL V+QT+V ++ +   + GLEP+NEPWQ  P+  LK
Sbjct:   51 EDWKVMGTNLGGWLVLEPWITPSLFYQFLSSDEKYGTDAPKHTGMDSYTFCDALGPVEGNKQMRRHWQAWVREEDIASIAKTGSNMVRIPVGDWQFAPYGPYIGCMDGANDELKRVLDLCSKYKIKALLDIHAVRGSQNGFDNSGQALAVKWTQVTSQADDGGITTFEHWPIRSAEWAGKFELSSWSYSSINDTNINSTLAVVQTIVSMFKDHPAIWGLEPLNEPWQAIPLEVLK 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G419_ECTSI3.550e-13475.00Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
A0A836CHB0_9STRA1.550e-10661.83Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Tribone... [more]
A0A7S2R252_9STRA5.030e-9558.44Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3QGF9_9STRA3.850e-9257.58Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2WMK6_9STRA1.620e-9157.83Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1ZG04_9STRA1.770e-9159.31Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A2P4XCM2_9STRA2.040e-9152.61Glucan 1,3-beta-glucosidase (Fragment) n=1 Tax=Phy... [more]
A0A7R9W2B8_9STRA1.050e-9055.22Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A8J6C6R7_DIALT1.060e-9057.33X8 domain-containing protein n=2 Tax=Diacronema lu... [more]
A0A0M0J8Y9_9EUKA1.620e-9052.77Glucan-beta n=1 Tax=Chrysochromulina tobinii TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58832contigH-elongata_contig58832:278..3248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.3
Seed ortholog evalue8.3e-110
Seed eggNOG ortholog2880.D7G419
KEGG rclassRC00467
KEGG koko:K01210
KEGG ReactionR00308,R03115
KEGG Pathwayko00500,map00500
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004338,GO:0004553,GO:0005575,GO:0005576,GO:0005623,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008422,GO:0009056,GO:0009057,GO:0009251,GO:0009986,GO:0009987,GO:0015926,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044464,GO:0071704,GO:1901575
EggNOG free text desc.Belongs to the glycosyl hydrolase 5 (cellulase A) family
EggNOG OGs2QPYU@2759,COG2730@1
EC3.2.1.58
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExo-1,3-beta-glucanase, family GH5
Ec32 orthologEc-19_000430.1
Exons6
Model size747
Cds size747
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58832.13383.1prot_H-elongata_contig58832.13383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58832 278..3248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.6142137-CDS-H-elongata_contig58832:277..4241622930954.6142137-CDS-H-elongata_contig58832:277..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 278..424 -
1691679639.0466197-CDS-H-elongata_contig58832:277..4241691679639.0466197-CDS-H-elongata_contig58832:277..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 278..424 -
1622930954.6322815-CDS-H-elongata_contig58832:988..11321622930954.6322815-CDS-H-elongata_contig58832:988..1132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 989..1132 -
1691679639.071501-CDS-H-elongata_contig58832:988..11321691679639.071501-CDS-H-elongata_contig58832:988..1132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 989..1132 -
1622930954.647746-CDS-H-elongata_contig58832:1388..14611622930954.647746-CDS-H-elongata_contig58832:1388..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 1389..1461 -
1691679639.080709-CDS-H-elongata_contig58832:1388..14611691679639.080709-CDS-H-elongata_contig58832:1388..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 1389..1461 -
1622930954.6653621-CDS-H-elongata_contig58832:1699..18901622930954.6653621-CDS-H-elongata_contig58832:1699..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 1700..1890 -
1691679639.0890944-CDS-H-elongata_contig58832:1699..18901691679639.0890944-CDS-H-elongata_contig58832:1699..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 1700..1890 -
1622930954.6789966-CDS-H-elongata_contig58832:2535..26161622930954.6789966-CDS-H-elongata_contig58832:2535..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 2536..2616 -
1691679639.0971768-CDS-H-elongata_contig58832:2535..26161691679639.0971768-CDS-H-elongata_contig58832:2535..2616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 2536..2616 -
1622930954.6956654-CDS-H-elongata_contig58832:3137..32481622930954.6956654-CDS-H-elongata_contig58832:3137..3248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 3138..3248 -
1691679639.10845-CDS-H-elongata_contig58832:3137..32481691679639.10845-CDS-H-elongata_contig58832:3137..3248Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58832 3138..3248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58832.13383.1

>prot_H-elongata_contig58832.13383.1 ID=prot_H-elongata_contig58832.13383.1|Name=mRNA_H-elongata_contig58832.13383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
VAAKDTKDYHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVG
MDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDW
MYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNS
GQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNAS
VAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLKASRVNSFT*
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mRNA from alignment at H-elongata_contig58832:278..3248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58832.13383.1 ID=mRNA_H-elongata_contig58832.13383.1|Name=mRNA_H-elongata_contig58832.13383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2971bp|location=Sequence derived from alignment at H-elongata_contig58832:278..3248- (Himanthalia elongata Himel1 dioecious)
GTTGCGGCCAAAGATACTAAAGATTACCACCTCAGGGGAGTCAATCTCGG TTCCTGGATGGTTCTTGAGCCCTGGATAACACCATCCATGTTCTTCCAGT TCCTTGGCAAGGTGAGATACTTGGATATTTCGAATGTGTGAATGTTTTTA TAAGAAGGTGTGTCATCTTCTCTTTCGCCGCGCCGTCACTTTTTTGTGAC GTCACTTGTCACGTTTCACTTTGTTTTGGTACACACTATTATCTATTGTT ATACGAACTTCCCGCGACGATCTTGCGCAGAACGTTCACGCTTCACAAAC TGTTTTCTATCTGCCAGTACGGTTTTGAGAGAGTGCCGCAACTCGGTAGA GCTATTTGCATCCTATCATGCTACCACGTTGTCGGACTAATGTGTACCTG GTCCACCTTATGGCCAATATGCTCGCGCGCGGTGTGATTGAGCGCATCAC TTGTATGTCAATGTGAAGCCGCCCTGCCGCATAACATACTAGGATGCCTA TAAGGCTTATAGTAGCCGTCCTTTGGTAGCCAAACGGACGGTCACTTCCC AGTTTCCTCCTCGCGAAGCGTTTCTCGGCGTTCTATAGTTGAGAGTAGCA TCCCGTTGACGTGTGGTTTGCACTCGGCACAGGATGATCCAGCTGAGGGC AATGACAAGGAGGACGTCGGCATGGACATGTACACCTTCTGCCAAGCGCT CGGCCCCGAGGAGGTGATCGATCGTTTGATACCAAATTGCATGCAGTAAA TATTGCACTATGCTCCCACGGGTAGTCGACTAGAACACCTTATCTCGGTA GACCCAAGCGTCTCCGTGTTCTCGCCTCCGTGGATTGATAGGCTGCAGCA CACCGCAGTGCACCACACACCCGAACACACGTTGATGGGTTCCGTGGCAT GTTCTCAATTCGATACGTATATCGATGTGGCGATACGCGACTCGATACGT CAGAGGCGTGGTTCGATGCGTCGGCAATTGGCCGTGTGATACCCAATGTT ATCCCAAACATCATTTCGAAGCCCGGTTTTGCGGTGTTTTCCCCTCTGAA ACACCTACCATACCAACTAGCGCCTCATCGCATGGCATGCCTTATCTACG TGGACGCCAACACTGAAAAGGCTATCCAGGGAGAACCTTGAGGTGGTAGG TCGCAGAGCGAGATGCTGTGCTTTCCCAGGGGAAACACGAGCACCGCAGC TCTTGCGGAGGATGCGAACGAGGAAACATTCGCTGAGTCAGAGTTTTGTT GCGTGCTCGCTTGGGGGTAGGCCATTCGTTCTGGAAACCTTTACAGCATG TGCGAGTCGGGGAATGAGCCTCGCCCTATTCTCTTGTGTAACTTGAACAT TAAACCAGGGCAACAAACAACTTCGGCGGCACTGGAAAACGTGGGTGAGA GATGTGGATATTGCTGACCTGGCTACGTCGGGCGTGGACACTATTCGGCT CCCCGTGGGGGACTGGATGTATCAACCGTACGGTCCTTATGTAGGCTGCA CGGAGGGAGCCTTGGACGAGGTCGACCGCCTCTTGGACCTCTGTCGCAGG TACAGTAGAAGCAACCGAAGGTCTACGTGGTTAAGATACGCAGGGTTTTG AAGGGCTGCCCGACCGACTCACGAGGAGAGGCACTTTCTCTTCTGAGAAC GGTTGTTGGAATGATCACGTTCGACGAGTCGAATCGAGTCCGCCCGATAC CGAAACCCCAGCCAAACTACTTACCAGCAATCTAGAGCTAAATGTATTTG TTATTGCGCTCTGTTGTGTTTGTATGGGCCCTCCCAGGTACGACATTCGC GTCCTGCTGGACATTCATGCACTAGCGGGGAGCCAGAACGGTCTCGACAA CTCGGGACAGGTGTGTTCCCAAAGAAGGCGTTCTCATTTTGGAAGTGGGG AGCCTTGGAGCCTGGGGATGCTGGGCTCGATTTGAACAATTGCAAATAGA CCGGGTGCAGAGCCTTCCCGCTTTGCATGAGTAGTTTCATGTCGGGCTGG ACAAGGAGCTACATGATAGAAATCCGTAGAGATTATCAGTACAGTGCAGT CCGACTTCGGATGCGAAGAGTCGTGACCCGCCCGCCCCTGCCTACCGGGT TTCTGGGTCGTGGAAGTCGATGGACGTCGAATGGACGACACACTCGGGCA GCGGGGAGGCAGAGACGGCGACTTTCGTGCACTGGCCGTTGCGATCGGCT CGCTGGATGGGAGACTTCAACCGCAGCACGGGGACGTACAGTGAGAAGGA CAACGCGTCGGTGAGAGGACGATGGCGGAGCAGAAAGCCCACTCGCTCTA AGAACGTAATATTCCTCGCCGCGTGCCTTTTCCTGGAAAATTCGTACGGT ATGTAGTGAGTAGGGAGGATATTTTGTTCTCTTTTTGTTTCCTTGTGTTT TCCCTTGAGGACCCCTGGAACCCTTAAAAAATCCCTGGGAATATAGGAAA CCCTAGAAGAAAACCCCCCTCTCGGGGGAAGCGTATGGAGGCGCTGGAAC GAGCGCGTGATGCATGGCACAAATCGATAATTTTGGGCGTGTATGAGTCC CTTGGTTCGTGCTGCGTCGCGGTATCGTTGGTGATGTAATATAAAAAATT AGGCTTGCAGCTGTCTAAATGAAAGAAAAATGAAAGTCTAGCAGCATCAG TCGGGTGTGCCGCAGATTTCGAAGCCTAACGCAACGCAACGGTGCGGTAT GATACGGTATAGTATGGTACTATATGGTATGGTACTATATGGTACTATGT GGTTTTGTGTGTTTTGGTTATGACCCGTCACCCAAGACGCGTTCCCAGTG GCAGGCGGTCTCTCCTTCGATCAGGTTGCTCACACGCTGCTGGTGATCCA AACGATGGTTGATTTATATGCCAACGAGAGCATGGTGATGGGCTTGGAGC CGGTTAACGAGCCCTGGCAATTCACACCCATCAACTGGCTCAAGGCAAGC AGAGTAAACAGCTTCACTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig58832:278..3248-

>mRNA_H-elongata_contig58832.13383.1 ID=mRNA_H-elongata_contig58832.13383.1|Name=mRNA_H-elongata_contig58832.13383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig58832:278..3248- (Himanthalia elongata Himel1 dioecious)
GTTGCGGCCAAAGATACTAAAGATTACCACCTCAGGGGAGTCAATCTCGG
TTCCTGGATGGTTCTTGAGCCCTGGATAACACCATCCATGTTCTTCCAGT
TCCTTGGCAAGGTTGCGGCCAAAGATACTAAAGATTACCACCTCAGGGGA
GTCAATCTCGGTTCCTGGATGGTTCTTGAGCCCTGGATAACACCATCCAT
GTTCTTCCAGTTCCTTGGCAAGGATGATCCAGCTGAGGGCAATGACAAGG
AGGACGTCGGCATGGACATGTACACCTTCTGCCAAGCGCTCGGCCCCGAG
GAGGATGATCCAGCTGAGGGCAATGACAAGGAGGACGTCGGCATGGACAT
GTACACCTTCTGCCAAGCGCTCGGCCCCGAGGAGGGCAACAAACAACTTC
GGCGGCACTGGAAAACGTGGGTGAGAGATGTGGATATTGCTGACCTGGCT
ACGTCGGGCGTGGACACTATTCGGCTCCCCGTGGGGGACTGGATGTATCA
ACCGTACGGTCCTTATGTAGGCTGCACGGAGGGAGCCTTGGACGAGGTCG
ACCGCCTCTTGGACCTCTGTCGCAGGGCAACAAACAACTTCGGCGGCACT
GGAAAACGTGGGTGAGAGATGTGGATATTGCTGACCTGGCTACGTCGGGC
GTGGACACTATTCGGCTCCCCGTGGGGGACTGGATGTATCAACCGTACGG
TCCTTATGTAGGCTGCACGGAGGGAGCCTTGGACGAGGTCGACCGCCTCT
TGGACCTCTGTCGCAGGTACGACATTCGCGTCCTGCTGGACATTCATGCA
CTAGCGGGGAGCCAGAACGGTCTCGACAACTCGGGACAGGTACGACATTC
GCGTCCTGCTGGACATTCATGCACTAGCGGGGAGCCAGAACGGTCTCGAC
AACTCGGGACAGTCGATGGACGTCGAATGGACGACACACTCGGGCAGCGG
GGAGGCAGAGACGGCGACTTTCGTGCACTGGCCGTTGCGATCGGCTCGCT
GGATGGGAGACTTCAACCGCAGCACGGGGACGTACAGTGAGAAGGACAAC
GCGTCGTCGATGGACGTCGAATGGACGACACACTCGGGCAGCGGGGAGGC
AGAGACGGCGACTTTCGTGCACTGGCCGTTGCGATCGGCTCGCTGGATGG
GAGACTTCAACCGCAGCACGGGGACGTACAGTGAGAAGGACAACGCGTCG
GTTGCTCACACGCTGCTGGTGATCCAAACGATGGTTGATTTATATGCCAA
CGAGAGCATGGTGATGGGCTTGGAGCCGGTTAACGAGCCCTGGCAATTCA
CACCCATCAACTGGCTCAAGGCAAGCAGAGTAAACAGCTTCACTTGAGTT
GCTCACACGCTGCTGGTGATCCAAACGATGGTTGATTTATATGCCAACGA
GAGCATGGTGATGGGCTTGGAGCCGGTTAACGAGCCCTGGCAATTCACAC
CCATCAACTGGCTCAAGGCAAGCAGAGTAAACAGCTTCACTTGA
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