mRNA_H-elongata_contig58832.13383.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: D7G419_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G419_ECTSI) HSP 1 Score: 400 bits (1028), Expect = 3.550e-134 Identity = 180/240 (75.00%), Postives = 207/240 (86.25%), Query Frame = 1
Query: 1 VAAKDTKDYHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
V K YHLRGVNLGSWMVLEPWITPSMFFQFLGK+ +EG +GMDMYTFCQALGPEEGNKQL+RHW+TWV + DIA LAT GV+TIRLPVGDWMYQPYGPYVGCT+GAL+EVDRL DLCRRY IRVLLDIHA+A SQNG DNSGQ+MD+EWTT+SG+ + TATFVHWP R+ARWMGD++R+ G Y+ K+ +++ TL VIQTMVDLYANE+ VMGL+PVNEPWQFTPI+WLK
Sbjct: 60 VNIKAANGYHLRGVNLGSWMVLEPWITPSMFFQFLGKEVTSEGEGSSQIGMDMYTFCQALGPEEGNKQLKRHWQTWVTEEDIAQLATVGVNTIRLPVGDWMYQPYGPYVGCTDGALEEVDRLFDLCRRYGIRVLLDIHAIANSQNGFDNSGQAMDIEWTTYSGNAVSGTATFVHWPYRAARWMGDWDRAAGEYTSKNESAIEFTLKVIQTMVDLYANETAVMGLQPVNEPWQFTPIDWLK 299
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A836CHB0_9STRA (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB0_9STRA) HSP 1 Score: 329 bits (844), Expect = 1.550e-106 Identity = 149/241 (61.83%), Postives = 186/241 (77.18%), Query Frame = 1
Query: 25 YHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEG---------NDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
Y +R VNLGSW+VLEPWITP++FFQFLGK+ A G + ++ VGMDMY+FC ALGP+EGN+QLR HW +WV + DIA LAT G++TIRLPVGDWMY+PYGPYVGCT+GAL++V+RL L Y+I +LLDIHA+ GSQNG DNSG+S+++EWTT S + A ATFVHWP RSA WMG F+ T TY +K+ A + HTL VI+ MVD+Y V+G+EPVNEPWQFTP+ WLK
Sbjct: 80 YKIRAVNLGSWLVLEPWITPTLFFQFLGKEVEAAGVPGESPHGASTQDSVGMDMYSFCLALGPDEGNRQLRAHWDSWVTETDIAQLATMGINTIRLPVGDWMYKPYGPYVGCTDGALEQVERLFWLAHHYNIGILLDIHAVQGSQNGFDNSGRSLNLEWTTFSSTKVAGAATFVHWPYRSANWMGTFDPHTATYVDKNEAHLQHTLDVIRIMVDMYKFVPSVIGIEPVNEPWQFTPVKWLK 320
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S2R252_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R252_9STRA) HSP 1 Score: 293 bits (751), Expect = 5.030e-95 Identity = 135/231 (58.44%), Postives = 166/231 (71.86%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+RGVNLG W+VLEPWITPS+F+QFLG D+ +D+Y+FC+ LGPEEGNKQLRRHW TWV + I LA+SG V+++RLPVGDWMY+PYGPY+GCT+GALD VD LLD I VL+DIH + GSQNG DNSGQ +EWT+ + A TF HWP+RSA WMGDF+R T +Y+ + + H L IQ +VD Y N V+GLEPVNEPWQFTP+ LK
Sbjct: 59 IRGVNLGGWLVLEPWITPSLFYQFLGGDENT-------TALDIYSFCEVLGPEEGNKQLRRHWDTWVTEDIIESLASSGAVNSLRLPVGDWMYKPYGPYIGCTDGALDYVDYLLDWAHSRGISVLIDIHGVKGSQNGFDNSGQCQGMEWTSQLNTEPAGLVTFEHWPIRSANWMGDFDRETTSYTNINYKQIQHALDTIQVIVDKYKNHPAVLGLEPVNEPWQFTPLKELK 282
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S3QGF9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QGF9_9STRA) HSP 1 Score: 295 bits (756), Expect = 3.850e-92 Identity = 133/231 (57.58%), Postives = 174/231 (75.32%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+RGVNLG WMVLEPWITPS+F+QFLGKD+ E GMD ++FC+ALGPEEGNKQLRRHW+TWV + I +L SG V+++RLPVGDWMY+PYGPY+GCT+GALD VD++LD Y + VL DIHA+ GSQNG DNSG + +WT+ + TF HWP+RSA W+G F+R T TY++ D+ ++ H+L VI+ MV+ Y + V+GL+PVNEPW++TPI+ LK
Sbjct: 69 IRGVNLGGWMVLEPWITPSLFYQFLGKDE-------EHTGMDQFSFCEALGPEEGNKQLRRHWETWVTEEIIKELKDSGAVNSLRLPVGDWMYKPYGPYIGCTDGALDYVDKVLDWAYEYGLNVLFDIHAMRGSQNGFDNSGDAQGFKWTSKITEQVSTDVTFEHWPIRSAGWVGTFDRVTATYTDIDHDNIQHSLDVIEIMVEKYKDHPAVLGLQPVNEPWEWTPIDVLK 292
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S2WMK6_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMK6_9STRA) HSP 1 Score: 292 bits (747), Expect = 1.620e-91 Identity = 133/230 (57.83%), Postives = 170/230 (73.91%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+RGV++G W+VLEPWITPS+F+QFLG D+ E MDMY+FCQ LGPEEGNKQLRRHW TWV + I +LA +G++++RLPVGDWMY+PYGPYVGCT+GALD+VD LLD ++ + VLLD+H + GSQNG DNSGQS + WT+ + + TFVHWP+RSA W+G F+ STG YS + +A TL VI +VD Y V+GLEPVNEPW+ TP++ LK
Sbjct: 16 VRGVSIGGWLVLEPWITPSLFYQFLGADE-------EHTAMDMYSFCQVLGPEEGNKQLRRHWDTWVTEAIIDELAAAGINSLRLPVGDWMYEPYGPYVGCTDGALDKVDWLLDQAAKHKLSVLLDLHGVIGSQNGFDNSGQSSSLVWTSILSTKPIQAVTFVHWPIRSAGWIGTFD-STGFYSSINREHIAMTLRVITAIVDRYHTHPSVLGLEPVNEPWELTPLDILK 237
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7S1ZG04_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZG04_9STRA) HSP 1 Score: 293 bits (750), Expect = 1.770e-91 Identity = 137/231 (59.31%), Postives = 168/231 (72.73%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+RGVNLGSWMVLEPWITPSMF+QFLG D+ + MDMY+FC+ LGPEEGNKQLRRHW TWV + I +LA SG V+++RLPVGDWMY+PYGPY+GCT+GALD VD LLD + VL DIH + GSQNG DNSGQS D EWT+ + A TF HW +RSA WMG+F+R T Y+ + ++ H L IQ +V++Y V+GLEPVNEPWQ+TPI+ LK
Sbjct: 74 IRGVNLGSWMVLEPWITPSMFYQFLGGDET-------NTAMDMYSFCEILGPEEGNKQLRRHWDTWVTEELIEELAQSGAVNSLRLPVGDWMYKPYGPYIGCTDGALDYVDDLLDWAHARGLTVLFDIHGVKGSQNGFDNSGQSQDFEWTSALNTEPAGLVTFQHWGIRSAAWMGEFDRETIEYTSTNYENIEHALETIQEIVNMYKGHPAVLGLEPVNEPWQYTPIDELK 297
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A2P4XCM2_9STRA (Glucan 1,3-beta-glucosidase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XCM2_9STRA) HSP 1 Score: 281 bits (719), Expect = 2.040e-91 Identity = 121/230 (52.61%), Postives = 165/230 (71.74%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+RG NLG W+VLEPWITP++F+QFL + E MDMYTFC ALG EE N+QLR HW TWV + D+ ++A +GV+++R+PVGDWM+ PY PY+GCT+GA++E+DR+ +L +Y+I +LLDIH L GSQNG DNSG + V+WT+ + + T TF HWPLRSA W G+FN +T TY + + H+L + +V+ YAN ++GLEPVNEPW+ TPI+ LK
Sbjct: 85 VRGANLGGWLVLEPWITPTLFYQFLSTQERFGDKAPEKTAMDMYTFCTALGKEEANRQLRIHWATWVTEADLKEMAEAGVNSLRVPVGDWMFNPYEPYIGCTDGAVNELDRVANLALKYNIDLLLDIHGLIGSQNGFDNSGMASSVKWTSIASTRPIGTTTFEHWPLRSAGWAGEFNSTTNTYKSINYEHLNHSLATVAAIVNRYANHPAIIGLEPVNEPWELTPIDLLK 314
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A7R9W2B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2B8_9STRA) HSP 1 Score: 279 bits (713), Expect = 1.050e-90 Identity = 127/230 (55.22%), Postives = 167/230 (72.61%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSG-VDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWTTHSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWL 717
+RGVNLG W+VLEPWITPS+F+QFL EGN+ V MD Y+FC+ LGPEEGNKQL+RHW TWV + I +LA SG V+++RLPVGDWMY+PYGPY+GCT+GA + V+ +LD Y + VL+D+H L GSQNG DNSGQSM+++WT+ TF HWP+R+A WMG+FN +T Y E + ++ H L V++ +V ++A V+GLEPVNEPW+ TPI L
Sbjct: 87 IRGVNLGGWLVLEPWITPSLFYQFL------EGNETS-VAMDHYSFCEVLGPEEGNKQLKRHWDTWVTEEHIKELAESGAVNSLRLPVGDWMYKPYGPYIGCTDGANEYVENVLDWASEYGLSVLIDVHGLKGSQNGFDNSGQSMNMQWTSSINKYPRGLTTFQHWPIRNAGWMGEFNVTTLEYPEINRENIQHALDVLEEIVKMFAGHPAVLGLEPVNEPWEHTPIKEL 309
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A8J6C6R7_DIALT (X8 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C6R7_DIALT) HSP 1 Score: 292 bits (748), Expect = 1.060e-90 Identity = 133/232 (57.33%), Postives = 174/232 (75.00%), Query Frame = 1
Query: 31 LRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWT--THSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+RGVNLG W+VLEPWITPS+F+QFLG D+ + VGMDM+TFC+ALGPEEGN+QLRRHWK+WV + DI L + +DT+R+PVGDWM++PYGPYV CT GAL+E+DR+L LC +Y ++VLLDIHA+ GSQNGLDNSG+S +V WT T S + E + TF HW R A W+GDF + +YS + A + TL V++ + D YA+ VMG++P+NEPW FTP+ LK
Sbjct: 109 IRGVNLGGWLVLEPWITPSLFYQFLGADERWGDETAKKVGMDMWTFCEALGPEEGNRQLRRHWKSWVGEEDIRTLFSLNLDTLRIPVGDWMWRPYGPYVNCTAGALEELDRVLALCGKYGLKVLLDIHAVEGSQNGLDNSGRSTEVRWTANTFSDAPEMQGRTFSHWSSRKAEWIGDFEIESLSYSSINWARIDATLDVVRMIADQYAHNGAVMGVQPLNEPWLFTPLGPLK 340
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Match: A0A0M0J8Y9_9EUKA (Glucan-beta n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8Y9_9EUKA) HSP 1 Score: 286 bits (731), Expect = 1.620e-90 Identity = 124/235 (52.77%), Postives = 169/235 (71.91%), Query Frame = 1
Query: 19 KDYHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGMDMYTFCQALGPEEGNKQLRRHWKTWVRDVDIADLATSGVDTIRLPVGDWMYQPYGPYVGCTEGALDEVDRLLDLCRRYDIRVLLDIHALAGSQNGLDNSGQSMDVEWT-THSGSGEAETATFVHWPLRSARWMGDFNRSTGTYSEKDNASVAHTLLVIQTMVDLYANESMVMGLEPVNEPWQFTPINWLK 720
+D+ + G NLG W+VLEPWITPS+F+QFL D+ + + GMD YTFC ALGP EGNKQ+RRHW+ WVR+ DIA +A +G + +R+PVGDW + PYGPY+GC +GA DE+ R+LDLC +Y I+ LLDIHA+ GSQNG DNSGQ++ V+WT S + + TF HWP+RSA W G F S+ +YS ++ ++ TL V+QT+V ++ + + GLEP+NEPWQ P+ LK
Sbjct: 51 EDWKVMGTNLGGWLVLEPWITPSLFYQFLSSDEKYGTDAPKHTGMDSYTFCDALGPVEGNKQMRRHWQAWVREEDIASIAKTGSNMVRIPVGDWQFAPYGPYIGCMDGANDELKRVLDLCSKYKIKALLDIHAVRGSQNGFDNSGQALAVKWTQVTSQADDGGITTFEHWPIRSAEWAGKFELSSWSYSSINDTNINSTLAVVQTIVSMFKDHPAIWGLEPLNEPWQAIPLEVLK 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58832.13383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58832.13383.1 >prot_H-elongata_contig58832.13383.1 ID=prot_H-elongata_contig58832.13383.1|Name=mRNA_H-elongata_contig58832.13383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp VAAKDTKDYHLRGVNLGSWMVLEPWITPSMFFQFLGKDDPAEGNDKEDVGback to top mRNA from alignment at H-elongata_contig58832:278..3248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58832.13383.1 ID=mRNA_H-elongata_contig58832.13383.1|Name=mRNA_H-elongata_contig58832.13383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2971bp|location=Sequence derived from alignment at H-elongata_contig58832:278..3248- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58832:278..3248- >mRNA_H-elongata_contig58832.13383.1 ID=mRNA_H-elongata_contig58832.13383.1|Name=mRNA_H-elongata_contig58832.13383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig58832:278..3248- (Himanthalia elongata Himel1 dioecious)back to top |