mRNA_H-elongata_contig58814.13381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58814.13381.1
Unique NamemRNA_H-elongata_contig58814.13381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58814.13381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58814contigH-elongata_contig58814:126..1534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size820
Cds size816
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930954.486972-CDS-H-elongata_contig58814:125..8891622930954.486972-CDS-H-elongata_contig58814:125..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58814 126..889 +
1691679638.9805422-CDS-H-elongata_contig58814:125..8891691679638.9805422-CDS-H-elongata_contig58814:125..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58814 126..889 +
1622930954.5009782-CDS-H-elongata_contig58814:1480..15321622930954.5009782-CDS-H-elongata_contig58814:1480..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58814 1481..1532 +
1691679638.9925375-CDS-H-elongata_contig58814:1480..15321691679638.9925375-CDS-H-elongata_contig58814:1480..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58814 1481..1532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58814.13381.1prot_H-elongata_contig58814.13381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58814 126..1532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58814.13381.1

>prot_H-elongata_contig58814.13381.1 ID=prot_H-elongata_contig58814.13381.1|Name=mRNA_H-elongata_contig58814.13381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
PLPSSTSPLGDGNGLGAITSAPVSPLVAMPTVEDSAREIGRRKPAEDKET
ELTWAIGMKALGKGSSSCTFSWGGDTASSSPEVARAPSATVTDPVPADAA
PTVIDLPSACSCGGDSDGDGVESGNLSPNTAAAAALGAALTTAMASHKRV
GGRKGTEGDGLEAPDGDLPRLLSSATARKSSVLMQRGGKEVGLREGAGAD
ELGPWEDGGDPSHRSRWREVRDRTRESTGMGPASMARARYAASGARLTSP
VFERSALPTLSQLRRQGPKMFS
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mRNA from alignment at H-elongata_contig58814:126..1534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58814.13381.1 ID=mRNA_H-elongata_contig58814.13381.1|Name=mRNA_H-elongata_contig58814.13381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1409bp|location=Sequence derived from alignment at H-elongata_contig58814:126..1534+ (Himanthalia elongata Himel1 dioecious)
CCTTTACCTTCCTCCACCTCGCCCTTGGGCGACGGAAATGGCCTCGGGGC
GATCACTTCCGCTCCGGTGTCTCCCCTCGTGGCGATGCCAACGGTCGAAG
ACTCAGCCCGCGAGATCGGGCGAAGGAAACCGGCCGAGGACAAGGAGACC
GAACTAACGTGGGCAATCGGAATGAAGGCGCTAGGCAAGGGCAGCTCCAG
TTGCACGTTTTCGTGGGGTGGTGACACGGCGTCGTCGTCCCCGGAAGTAG
CTAGGGCGCCGTCCGCTACCGTAACCGATCCCGTTCCCGCCGACGCCGCA
CCAACGGTCATCGACCTTCCGTCAGCCTGTAGCTGCGGTGGCGATAGCGA
TGGAGATGGCGTCGAAAGTGGTAACCTTTCGCCCAACACGGCCGCTGCGG
CTGCCCTTGGCGCGGCGCTTACGACTGCCATGGCCTCGCACAAGAGGGTG
GGAGGAAGAAAAGGTACGGAAGGCGACGGACTGGAAGCGCCGGACGGGGA
CTTGCCCAGGCTTCTTTCCTCCGCCACCGCTAGAAAAAGCTCGGTTTTAA
TGCAGCGCGGAGGTAAGGAGGTTGGGCTCCGAGAGGGCGCCGGCGCCGAC
GAGCTCGGACCTTGGGAAGACGGTGGCGACCCGAGTCATCGCTCGCGGTG
GCGCGAGGTGCGAGACAGGACTAGAGAGTCTACCGGGATGGGACCGGCGT
CGATGGCGAGAGCGAGATACGCGGCCAGCGGGGCTCGCTTGACTTCGCCG
GTGTTCGAGAGAAGGTGGGGTGTTGTTTAGCCGTGTTTCGGGGTATGTGA
GGGAAGGGGTGGGCGAGGAGGGATGGTGTTGGGGGTTGGTTCGTATTTTT
ACGATCCTCTCTTGAATACTTGCATTATCCTAGAAGGTTTATCGCGCCGT
GTGGCTGACAAGGTAATATCCCTGGAATTAGATTAGATCATATGGAGGGC
CCAGACCTCCCTCTTGAAAGTACCAGTTGAAGCTACTCAAGCAGCAGGGG
CATCACTCAAGCACCATATTGTCTCATAAATGCGCGCGGGGCTGGCCCCT
GACTCCCGAAGGTCATTTTGTTTTGCTCGTTATATGCCCGATGTGCTTTT
CATCTGCGTTAAAACCCTTCGGCCGCCCTCCCTTGGGGTGGCGTGAACGA
GACTTTGTAGGCGTGGCTTTCCAATCACCACTCGAGCCAACAAACACATC
GCGGTAACAAACTCTGCACGGTGTAAGGAGCAGGGGTACTATTTTGGCAA
AAGGCGACCGATTCGTCGCTTCGCTTGATGCACGCCAAAAAAACGCTTCC
TCGTGCGGAAATCCTTTTGTTCTCCCCTGCTCGCGCGCGTGTTGCGCTTC
GTCAGTGCCTTGCCCACTCTCAGTCAACTTCGTCGACAGGGCCCTAAGAT
GTTCTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig58814:126..1534+

>mRNA_H-elongata_contig58814.13381.1 ID=mRNA_H-elongata_contig58814.13381.1|Name=mRNA_H-elongata_contig58814.13381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig58814:126..1534+ (Himanthalia elongata Himel1 dioecious)
CCTTTACCTTCCTCCACCTCGCCCTTGGGCGACGGAAATGGCCTCGGGGC
GATCACTTCCGCTCCGGTGTCTCCCCTCGTGGCGATGCCAACGGTCGAAG
ACTCAGCCCGCGAGATCGGGCGAAGGAAACCGGCCGAGGACAAGGAGACC
GAACTAACGTGGGCAATCGGAATGAAGGCGCTAGGCAAGGGCAGCTCCAG
TTGCACGTTTTCGTGGGGTGGTGACACGGCGTCGTCGTCCCCGGAAGTAG
CTAGGGCGCCGTCCGCTACCGTAACCGATCCCGTTCCCGCCGACGCCGCA
CCAACGGTCATCGACCTTCCGTCAGCCTGTAGCTGCGGTGGCGATAGCGA
TGGAGATGGCGTCGAAAGTGGTAACCTTTCGCCCAACACGGCCGCTGCGG
CTGCCCTTGGCGCGGCGCTTACGACTGCCATGGCCTCGCACAAGAGGGTG
GGAGGAAGAAAAGGTACGGAAGGCGACGGACTGGAAGCGCCGGACGGGGA
CTTGCCCAGGCTTCTTTCCTCCGCCACCGCTAGAAAAAGCTCGGTTTTAA
TGCAGCGCGGAGGTAAGGAGGTTGGGCTCCGAGAGGGCGCCGGCGCCGAC
GAGCTCGGACCTTGGGAAGACGGTGGCGACCCGAGTCATCGCTCGCGGTG
GCGCGAGGTGCGAGACAGGACTAGAGAGTCTACCGGGATGGGACCGGCGT
CGATGGCGAGAGCGAGATACGCGGCCAGCGGGGCTCGCTTGACTTCGCCG
GTGTTCGAGAGAAGCCTTTACCTTCCTCCACCTCGCCCTTGGGCGACGGA
AATGGCCTCGGGGCGATCACTTCCGCTCCGGTGTCTCCCCTCGTGGCGAT
GCCAACGGTCGAAGACTCAGCCCGCGAGATCGGGCGAAGGAAACCGGCCG
AGGACAAGGAGACCGAACTAACGTGGGCAATCGGAATGAAGGCGCTAGGC
AAGGGCAGCTCCAGTTGCACGTTTTCGTGGGGTGGTGACACGGCGTCGTC
GTCCCCGGAAGTAGCTAGGGCGCCGTCCGCTACCGTAACCGATCCCGTTC
CCGCCGACGCCGCACCAACGGTCATCGACCTTCCGTCAGCCTGTAGCTGC
GGTGGCGATAGCGATGGAGATGGCGTCGAAAGTGGTAACCTTTCGCCCAA
CACGGCCGCTGCGGCTGCCCTTGGCGCGGCGCTTACGACTGCCATGGCCT
CGCACAAGAGGGTGGGAGGAAGAAAAGGTACGGAAGGCGACGGACTGGAA
GCGCCGGACGGGGACTTGCCCAGGCTTCTTTCCTCCGCCACCGCTAGAAA
AAGCTCGGTTTTAATGCAGCGCGGAGGTAAGGAGGTTGGGCTCCGAGAGG
GCGCCGGCGCCGACGAGCTCGGACCTTGGGAAGACGGTGGCGACCCGAGT
CATCGCTCGCGGTGGCGCGAGGTGCGAGACAGGACTAGAGAGTCTACCGG
GATGGGACCGGCGTCGATGGCGAGAGCGAGATACGCGGCCAGCGGGGCTC
GCTTGACTTCGCCGGTGTTCGAGAGAAGTGCCTTGCCCACTCTCAGTCAA
CTTCGTCGACAGGGCCCTAAGATGTTCTCCTGCCTTGCCCACTCTCAGTC
AACTTCGTCGACAGGGCCCTAAGATGTTCTCC
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