mRNA_H-elongata_contig58791.13377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58791.13377.1
Unique NamemRNA_H-elongata_contig58791.13377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A836CLM1_9STRA (Thiolase, N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.520e-14
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   58 SPEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            SP+D++VV  +RT ITRAKKGAFKDTTPDVLLA VL  VL RTGV   D+GE+
Sbjct:    3 SPDDIVVVAAVRTPITRAKKGAFKDTTPDVLLATVLRTVLERTGVMGEDLGEI 55          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: I0YTA0_COCSC (Thiolase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YTA0_COCSC)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-12
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    7 SAAVAAGQTNTLAGVPESPEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            ++A AAG +         P+DV++V  +RT IT+AK+G FKDT PD L+A V  A L RTG+NP+D+G++
Sbjct:   38 ASACAAGDSAAYERRASGPDDVVIVSALRTPITKAKRGGFKDTLPDDLMAAVFQATLDRTGINPADIGDI 107          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A672R1Y3_SINGR (Thiolase_N domain-containing protein n=2 Tax=Cyprininae TaxID=2743694 RepID=A0A672R1Y3_SINGR)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-11
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   61 PEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEVPC 222
            P D++VV  +RTAI RAK+G+FKDTTPD LL+ V+ AVL   G+ PS +G+V C
Sbjct:   29 PNDIVVVHGLRTAIGRAKRGSFKDTTPDELLSAVMRAVLKDVGLRPSLLGDVCC 82          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: UPI000C6F67BB (3-ketoacyl-CoA thiolase, peroxisomal-like n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=UPI000C6F67BB)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-11
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   61 PEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            P+DV+VV  +RTAI RAK+G+FKDTTPD LL+ V+ AVL   G++P+++G+V
Sbjct:   40 PDDVVVVHGLRTAIGRAKRGSFKDTTPDELLSAVMTAVLTDVGLSPAELGDV 91          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A3B4WSX7_SERLL (Thiolase_N domain-containing protein n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WSX7_SERLL)

HSP 1 Score: 64.7 bits (156), Expect = 1.540e-11
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   61 PEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            P+DV+VV  +RTAI RAK+G+FKDTTPD LL+ V+ AVL   G++P+++G+V
Sbjct:   40 PDDVVVVHGLRTAIGRAKRGSFKDTTPDELLSAVMTAVLTDVGLSPAELGDV 91          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A8J5XCH5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCH5_DIALT)

HSP 1 Score: 67.8 bits (164), Expect = 1.980e-11
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   55 ESPEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            +SP+DV+++ V RT I RAK+GAFKDTTPDVLLA  L   + R GV   DVG++
Sbjct:   30 QSPDDVVILSVARTPIGRAKRGAFKDTTPDVLLAHALRGAIERAGVRAEDVGDI 83          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A2D4CJ66_PYTIN (3-ketoacyl-CoA thiolase A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJ66_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 2.070e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   64 EDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            +DV+VV  +RT IT+AK+G FKDTTPDVLL  VL AVL +T V+P  VG++
Sbjct:   27 DDVVVVSALRTPITKAKRGGFKDTTPDVLLGHVLQAVLTQTKVDPKRVGDI 77          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: K3X1S5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1S5_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 5.080e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   28 QTNTLAGVPESPEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            Q N  A  P   EDV++V  +RT IT+AK+G FKDTTPDVLL  VL AVL +  V+P  VG++
Sbjct:   12 QQNKPATAPVVDEDVVIVSALRTPITKAKRGGFKDTTPDVLLGHVLQAVLKQAKVDPKLVGDI 74          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A7S0PE83_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PE83_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 5.990e-11
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 HVSAAVAAG----QTNTLAGVPESPEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            H+ +A A+G    ++ T AG P S +DV+++  +RT I +A++GAFKDTTPDVLLA VL    +R+GV    +G++
Sbjct:   32 HLGSAAASGPSRAKSTTQAGAPPSFDDVLIIAAVRTPIGKARRGAFKDTTPDVLLATVLKEAQSRSGVPMHAIGDI 107          
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Match: A0A4P9ZNT3_9FUNG (Thiolase, N-terminal domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZNT3_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 6.980e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   55 ESPEDVMVVDVIRTAITRAKKGAFKDTTPDVLLAEVLGAVLARTGVNPSDVGEV 216
            +S EDV++V  +RT ITRA++GAFKDT P+ LLAEVL A LART ++P+ V +V
Sbjct:   29 KSDEDVVIVSALRTPITRARRGAFKDTPPEDLLAEVLKATLARTAIDPAMVDDV 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58791.13377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLM1_9STRA3.520e-1469.81Thiolase, N-terminal domain-containing protein n=1... [more]
I0YTA0_COCSC2.300e-1247.14Thiolase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YTA... [more]
A0A672R1Y3_SINGR1.330e-1157.41Thiolase_N domain-containing protein n=2 Tax=Cypri... [more]
UPI000C6F67BB1.340e-1157.693-ketoacyl-CoA thiolase, peroxisomal-like n=1 Tax=... [more]
A0A3B4WSX7_SERLL1.540e-1157.69Thiolase_N domain-containing protein n=1 Tax=Serio... [more]
A0A8J5XCH5_DIALT1.980e-1157.41Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A2D4CJ66_PYTIN2.070e-1160.783-ketoacyl-CoA thiolase A n=1 Tax=Pythium insidios... [more]
K3X1S5_GLOUD5.080e-1153.97Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S0PE83_CAFRO5.990e-1144.74Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A4P9ZNT3_9FUNG6.980e-1159.26Thiolase, N-terminal domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58791contigH-elongata_contig58791:46..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog248742.XP_005646163.1
KEGG rclassRC00004,RC00326,RC00405,RC01702,RC02728
KEGG koko:K07513
KEGG ReactionR00927,R01177,R03778,R03858,R03991,R04546,R04742,R04747,R07891,R07895,R07899,R07937,R07953
KEGG Pathwayko00071,ko00280,ko00592,ko01040,ko01100,ko01110,ko01130,ko01212,ko03320,ko04146,map00071,map00280,map00592,map01040,map01100,map01110,map01130,map01212,map03320,map04146
KEGG ModuleM00087,M00113
GOsGO:0003674,GO:0003824,GO:0003988,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006950,GO:0006996,GO:0007031,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009062,GO:0009507,GO:0009514,GO:0009536,GO:0009611,GO:0009657,GO:0009694,GO:0009695,GO:0009787,GO:0009789,GO:0009966,GO:0009967,GO:0009987,GO:0010111,GO:0010646,GO:0010647,GO:0010817,GO:0016020,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016408,GO:0016740,GO:0016746,GO:0016747,GO:0019395,GO:0019752,GO:0023051,GO:0023056,GO:0030258,GO:0031090,GO:0031974,GO:0031981,GO:0032787,GO:0034440,GO:0042445,GO:0042446,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072329,GO:0072330,GO:0098588,GO:0098805,GO:1901419,GO:1901421,GO:1901575,GO:1901576,GO:1905957,GO:1905959
EggNOG free text desc.Belongs to the thiolase family
EggNOG OGs34GPB@3041,37NKG@33090,COG0183@1,KOG1389@2759
EC2.3.1.16
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description3-ketoacyl-CoA thiolase
Ec32 orthologEc-26_003940.1
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.8605652-CDS-H-elongata_contig58791:45..1711622930953.8605652-CDS-H-elongata_contig58791:45..171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58791 46..171 -
1691679638.7604547-CDS-H-elongata_contig58791:45..1711691679638.7604547-CDS-H-elongata_contig58791:45..171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58791 46..171 -
1622930953.8952305-CDS-H-elongata_contig58791:518..6351622930953.8952305-CDS-H-elongata_contig58791:518..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58791 519..635 -
1691679638.7743275-CDS-H-elongata_contig58791:518..6351691679638.7743275-CDS-H-elongata_contig58791:518..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58791 519..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58791.13377.1prot_H-elongata_contig58791.13377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58791 46..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58791.13377.1

>prot_H-elongata_contig58791.13377.1 ID=prot_H-elongata_contig58791.13377.1|Name=mRNA_H-elongata_contig58791.13377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
HVSAAVAAGQTNTLAGVPESPEDVMVVDVIRTAITRAKKGAFKDTTPDVL
LAEVLGAVLARTGVNPSDVGEVPCTLPLRGV
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mRNA from alignment at H-elongata_contig58791:46..635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58791.13377.1 ID=mRNA_H-elongata_contig58791.13377.1|Name=mRNA_H-elongata_contig58791.13377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig58791:46..635- (Himanthalia elongata Himel1 dioecious)
CATGTCTCGGCGGCGGTGGCAGCGGGACAGACCAATACCCTGGCGGGAGT TCCAGAGAGCCCCGAAGACGTGATGGTGGTGGATGTTATTCGAACTGCCA TCACCCGCGCCAAAAAGGTGGGGAAGGGGAGGAATAGGACCAGCGAAGTT CACGCCTCACTTCTATGTCTAGTTATCTTGAAGAATATAAGAAGAATATA TATCACACATGGTAGGGCGGTAGGGTGGATGTGGTACATTCTTCGCATCG GACTGTGTTTTACCATATTGTGCTATATCACTATATACCATAATGATGTG CTATACCGCTATATACCATAATGATGTGCTATACCATGCTATGGTATACC GTGCTATGATATACCGTGATATTGCTTCGTTATTTCTATTCGTCGTTGCT TCCGGGATGGGTGGTGGATGATGGATGATGGGTGTCTCGGCGTTTGACCC GGGGCCGCGCGCAGGGCGCCTTCAAGGACACCACTCCGGACGTGCTTCTT GCCGAGGTGCTTGGCGCCGTGCTAGCGAGGACCGGCGTCAACCCGAGTGA CGTCGGAGAGGTACCGTGTACCTTACCGTTGCGTGGCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig58791:46..635-

>mRNA_H-elongata_contig58791.13377.1 ID=mRNA_H-elongata_contig58791.13377.1|Name=mRNA_H-elongata_contig58791.13377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig58791:46..635- (Himanthalia elongata Himel1 dioecious)
CATGTCTCGGCGGCGGTGGCAGCGGGACAGACCAATACCCTGGCGGGAGT
TCCAGAGAGCCCCGAAGACGTGATGGTGGTGGATGTTATTCGAACTGCCA
TCACCCGCGCCAAAAAGCATGTCTCGGCGGCGGTGGCAGCGGGACAGACC
AATACCCTGGCGGGAGTTCCAGAGAGCCCCGAAGACGTGATGGTGGTGGA
TGTTATTCGAACTGCCATCACCCGCGCCAAAAAGGGCGCCTTCAAGGACA
CCACTCCGGACGTGCTTCTTGCCGAGGTGCTTGGCGCCGTGCTAGCGAGG
ACCGGCGTCAACCCGAGTGACGTCGGAGAGGTACCGTGTACCTTACCGTT
GCGTGGCGTTGGCGCCTTCAAGGACACCACTCCGGACGTGCTTCTTGCCG
AGGTGCTTGGCGCCGTGCTAGCGAGGACCGGCGTCAACCCGAGTGACGTC
GGAGAGGTACCGTGTACCTTACCGTTGCGTGGCGTT
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