mRNA_H-elongata_contig58787.13375.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58787.13375.1
Unique NamemRNA_H-elongata_contig58787.13375.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58787.13375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58787contigH-elongata_contig58787:3033..3635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size577
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.5483077-CDS-H-elongata_contig58787:3032..33011622930953.5483077-CDS-H-elongata_contig58787:3032..3301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 3033..3301 +
1691679638.6278505-CDS-H-elongata_contig58787:3032..33011691679638.6278505-CDS-H-elongata_contig58787:3032..3301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 3033..3301 +
1622930953.5682395-CDS-H-elongata_contig58787:3328..36351622930953.5682395-CDS-H-elongata_contig58787:3328..3635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 3329..3635 +
1691679638.6354136-CDS-H-elongata_contig58787:3328..36351691679638.6354136-CDS-H-elongata_contig58787:3328..3635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58787 3329..3635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58787.13375.1prot_H-elongata_contig58787.13375.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58787 3033..3635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58787.13375.1

>prot_H-elongata_contig58787.13375.1 ID=prot_H-elongata_contig58787.13375.1|Name=mRNA_H-elongata_contig58787.13375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
KGSGILTWTKLSKAAVDKARCEAHEGSPTPKRSPEGEEGGGDGVQNQHQR
RRKRRRLVDELGNDAVRSGHRAKVGVGVGGVFVEGRVIERLDDRLQPGRK
GDVHGSAGGKVGEKGGANGQGSVSAVKSPGSCSEDRSLSGLGSKPTTGGG
GASTTSDRENGGECQRRDGPLASQKGVNIEEGEDGEEFLPSG
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mRNA from alignment at H-elongata_contig58787:3033..3635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58787.13375.1 ID=mRNA_H-elongata_contig58787.13375.1|Name=mRNA_H-elongata_contig58787.13375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig58787:3033..3635+ (Himanthalia elongata Himel1 dioecious)
AAGGGCTCGGGGATCTTGACGTGGACGAAGTTGAGCAAGGCTGCAGTGGA
CAAGGCTCGATGCGAGGCCCACGAGGGGTCACCGACCCCGAAGCGTTCCC
CCGAGGGAGAAGAGGGTGGCGGTGACGGTGTTCAAAACCAGCACCAGCGT
CGTCGCAAACGGAGGCGGCTGGTGGACGAACTCGGTAATGACGCGGTCCG
GAGTGGACACCGCGCTAAAGTTGGTGTTGGGGTCGGAGGCGTTTTTGTTG
AGGGACGTGTTATCGAGAGGCGGCGGGAAGGTCTCGGGGGGGTAAGGTTG
GACGACCGGCTCCAACCCGGCCGGAAAGGAGATGTCCATGGTTCGGCAGG
AGGTAAGGTAGGGGAGAAGGGCGGGGCAAATGGTCAAGGAAGCGTTTCCG
CGGTCAAATCGCCAGGGAGTTGTTCCGAGGATCGTTCGCTGTCGGGGCTG
GGGTCTAAGCCGACTACAGGTGGCGGTGGCGCCTCAACGACCTCGGACCG
AGAGAATGGAGGAGAATGTCAACGACGGGATGGACCCCTTGCGTCTCAAA
AGGGTGTAAATATAGAGGAGGGAGAGGATGGAGAGGAATTTTTACCGTCA
GGC
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Coding sequence (CDS) from alignment at H-elongata_contig58787:3033..3635+

>mRNA_H-elongata_contig58787.13375.1 ID=mRNA_H-elongata_contig58787.13375.1|Name=mRNA_H-elongata_contig58787.13375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig58787:3033..3635+ (Himanthalia elongata Himel1 dioecious)
AAGGGCTCGGGGATCTTGACGTGGACGAAGTTGAGCAAGGCTGCAGTGGA
CAAGGCTCGATGCGAGGCCCACGAGGGGTCACCGACCCCGAAGCGTTCCC
CCGAGGGAGAAGAGGGTGGCGGTGACGGTGTTCAAAACCAGCACCAGCGT
CGTCGCAAACGGAGGCGGCTGGTGGACGAACTCGGTAATGACGCGGTCCG
GAGTGGACACCGCGCTAAAGTTGGTGTTGGGGTCGGAGGCGTTTTTGTTG
AGGGACGTGTTATCGAGAGAAGGGCTCGGGGATCTTGACGTGGACGAAGT
TGAGCAAGGCTGCAGTGGACAAGGCTCGATGCGAGGCCCACGAGGGGTCA
CCGACCCCGAAGCGTTCCCCCGAGGGAGAAGAGGGTGGCGGTGACGGTGT
TCAAAACCAGCACCAGCGTCGTCGCAAACGGAGGCGGCTGGTGGACGAAC
TCGGTAATGACGCGGTCCGGAGTGGACACCGCGCTAAAGTTGGTGTTGGG
GTCGGAGGCGTTTTTGTTGAGGGACGTGTTATCGAGAGGTTGGACGACCG
GCTCCAACCCGGCCGGAAAGGAGATGTCCATGGTTCGGCAGGAGGTAAGG
TAGGGGAGAAGGGCGGGGCAAATGGTCAAGGAAGCGTTTCCGCGGTCAAA
TCGCCAGGGAGTTGTTCCGAGGATCGTTCGCTGTCGGGGCTGGGGTCTAA
GCCGACTACAGGTGGCGGTGGCGCCTCAACGACCTCGGACCGAGAGAATG
GAGGAGAATGTCAACGACGGGATGGACCCCTTGCGTCTCAAAAGGGTGTA
AATATAGAGGAGGGAGAGGATGGAGAGGAATTTTTACCGTCAGGCGTTGG
ACGACCGGCTCCAACCCGGCCGGAAAGGAGATGTCCATGGTTCGGCAGGA
GGTAAGGTAGGGGAGAAGGGCGGGGCAAATGGTCAAGGAAGCGTTTCCGC
GGTCAAATCGCCAGGGAGTTGTTCCGAGGATCGTTCGCTGTCGGGGCTGG
GGTCTAAGCCGACTACAGGTGGCGGTGGCGCCTCAACGACCTCGGACCGA
GAGAATGGAGGAGAATGTCAACGACGGGATGGACCCCTTGCGTCTCAAAA
GGGTGTAAATATAGAGGAGGGAGAGGATGGAGAGGAATTTTTACCGTCAG
GC
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