mRNA_H-elongata_contig5878.13373.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5878.13373.1
Unique NamemRNA_H-elongata_contig5878.13373.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: D8LJS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS2_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 5.160e-178
Identity = 251/296 (84.80%), Postives = 272/296 (91.89%), Query Frame = 1
Query:    1 QELMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRDFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGLDLAAPSS 888
            Q++MEPFHYI+QVPGK+VRGKLIDAFQ WL I  + I  IKEVVGMLHNASL+VDDIEDNSKLRRG+PVAHSIYGVASTINTANYVYFQAL R +AL N +ALE+FV E LNLHRGQG DILWRD+NRCPTEEEYE+MVLDKTGGLFRLAVGLMQAFS D+R++T LL++LALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAV WMKQAGSFVYTR RL+SLKE+I+  I  LGGH+GL RLIEGLDRQLEGLDLA PSS
Sbjct:   21 QDIMEPFHYINQVPGKDVRGKLIDAFQIWLDIPAERIDAIKEVVGMLHNASLLVDDIEDNSKLRRGVPVAHSIYGVASTINTANYVYFQALERTHALGNSRALETFVHEQLNLHRGQGRDILWRDSNRCPTEEEYESMVLDKTGGLFRLAVGLMQAFSQDQRNYTPLLDQLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVVWMKQAGSFVYTRHRLVSLKESIAEGIQLLGGHLGLSRLIEGLDRQLEGLDLAEPSS 316          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: A0A7S2S248_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S248_9STRA)

HSP 1 Score: 394 bits (1012), Expect = 6.150e-132
Identity = 191/285 (67.02%), Postives = 235/285 (82.46%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRDFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLE 861
            L+EPF+YI+QVPGK+VRG+LIDAFQ WL I    I  IK+++  LHNASL+VDDIEDNS+LRRGIPVAH+IYG+ STIN ANYVYF AL R + L+NP+A+  FV E LNLHRGQG DILWRDT  CPTE+EY  MVLDKTGGLFRLAVGLM AFS++  DFT L+++LALYFQIRDDLINL+S EYM  KSFCEDLTEGKFSFPIIHC+ ++P+D +LLNILK++TE + +K++AV+ M++AGSF +TR  L SLK ++  EI +LGGH  L  LIE LD+Q++
Sbjct:   28 LLEPFNYINQVPGKDVRGRLIDAFQKWLNIPEATISDIKQIITELHNASLLVDDIEDNSQLRRGIPVAHAIYGIPSTINCANYVYFLALERCHQLRNPKAMNIFVGELLNLHRGQGQDILWRDTLSCPTEDEYRRMVLDKTGGLFRLAVGLMGAFSENGTDFTPLVDKLALYFQIRDDLINLASTEYMTSKSFCEDLTEGKFSFPIIHCIHSRPDDSQLLNILKKKTESIAIKRYAVDVMEKAGSFAHTRKELRSLKNDVMAEIESLGGHAELVALIEYLDKQVQ 312          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: A0A7S4JG93_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JG93_9STRA)

HSP 1 Score: 380 bits (976), Expect = 3.830e-127
Identity = 189/290 (65.17%), Postives = 232/290 (80.00%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEI-KTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRR--DFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGL 867
            L+E F YI+ VPGK+VRGKL+D FQ W+K++  ++   IKE+VG LHNASL+VDDIEDNSKLRRG+PVAHSI+GVA+ INTANY+YFQAL + + L N +A++ FV E LNLHRGQG DI+WRDT RCPTE+EY  MV+DKTGGLFRLAVGLM+AF+ +++  DFT L+N L LYFQIRDDLINL+  EY K KSFCEDLTEGKFSFPIIHCVR    D RLL+ILKQRT+D DVK +A + MK+AGS  YTR++ +S+K +I  +I  LGG+  L  LIE LD Q+E L
Sbjct:   14 LLEAFRYINSVPGKDVRGKLVDCFQLWMKVESAQVLHDIKEIVGKLHNASLLVDDIEDNSKLRRGVPVAHSIFGVATVINTANYIYFQALQKCHQLNNQEAMDVFVKEMLNLHRGQGHDIMWRDTTRCPTEQEYCNMVVDKTGGLFRLAVGLMKAFATEQKSADFTPLVNNLGLYFQIRDDLINLADEEYFKSKSFCEDLTEGKFSFPIIHCVRNDEVDTRLLSILKQRTDDTDVKHYAQKLMKEAGSLHYTREKCISIKRDIVSQIEELGGNPPLLSLIEKLDVQVEAL 303          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: F0Y476_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y476_AURAN)

HSP 1 Score: 377 bits (968), Expect = 5.240e-126
Identity = 190/287 (66.20%), Postives = 221/287 (77.00%), Query Frame = 1
Query:    1 QELMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRR-DFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQL 858
            + L+EPF+YIS+ PGKNVRG LIDAF  WL I  D ++ IK +V  LHNASL+VDDIED S+LRRG PVAH+I+GV ST+NTANYVYF AL   + L N +AL  FV E LNLHRGQG DILWRD+ RCPTE EY  MVLDKTGGLFRLAVG+M AFSD R+ +F  L++ LALYFQIRDDL+NL S +YM+ KS+CEDLTEGKFSFPI+H V A P D RLLNILKQRTE+ DVKKHAVE M   GSF YTR  L  LK +I  EI+ LGGH  L  L++ LD Q+
Sbjct:    9 EALLEPFNYISENPGKNVRGSLIDAFNMWLGIPGDRVEAIKRIVSRLHNASLLVDDIEDGSQLRRGKPVAHAIFGVPSTLNTANYVYFIALEECHRLDNGEALAVFVEELLNLHRGQGQDILWRDSCRCPTEAEYTTMVLDKTGGLFRLAVGMMAAFSDRRKGEFRKLVDLLALYFQIRDDLVNLRSDDYMRSKSYCEDLTEGKFSFPILHAVHAAPGDTRLLNILKQRTENPDVKKHAVEHMASLGSFAYTRTALAKLKADIGAEIALLGGHARLAALMDKLDAQI 295          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: A0A7S1ZPT9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPT9_TRICV)

HSP 1 Score: 372 bits (955), Expect = 9.970e-124
Identity = 184/298 (61.74%), Postives = 230/298 (77.18%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQV-DEIKTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRD--FTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGLDLAAPSSD 891
            L+E + YIS VPGK+VRGKL+D FQ W +++  D + TIK+++G LHNASLM+DDIEDNSKLRRG PVAH I+G+A  +NTANYVYF AL + +A+ NPQA++ FV E LNLHRGQG DI+WRD N+CP EEEY  MV+DKTGGLFRLAVGLMQAF+ + +D  F+ L+N L LYFQIRDDLINL+  EY K KSFCEDLTEGKFSFPIIHCVR   +D RLL+ILKQRT+D DVK++A   MKQAGS  YT ++ + +KE I  ++  LGG+  L +LIE L  Q+  L+ A   ++
Sbjct:   25 LLESYRYISSVPGKDVRGKLVDCFQLWFRVESPDVLATIKDIIGRLHNASLMIDDIEDNSKLRRGNPVAHHIFGIAPVLNTANYVYFLALEKCHAMGNPQAMQVFVSEILNLHRGQGHDIMWRDNNQCPAEEEYCNMVIDKTGGLFRLAVGLMQAFATNHKDTDFSPLVNNLGLYFQIRDDLINLADEEYFKSKSFCEDLTEGKFSFPIIHCVRKDKSDKRLLSILKQRTDDDDVKRYAQSLMKQAGSLHYTWEKCMRIKEEIVAQVKDLGGNPPLLKLIEKLHTQVGALEDAVSHTE 322          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: A0A7R9WV59_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WV59_9STRA)

HSP 1 Score: 371 bits (952), Expect = 2.840e-123
Identity = 191/308 (62.01%), Postives = 233/308 (75.65%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEI-KTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRD--FTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGLDLAAPSSDKNDTAILDSI 921
            L+E F YI+ +PGKNVRG++ID FQ W+K++ +E+   IK +VG LHNASLM+DDIEDNSKLRRGIPVAHSI+G+ + IN ANY YF AL + +AL+NPQA+  FV E LNLHRGQG DILWRD  RCPTEE+Y  MV DKTGGLFRLAVGLMQAF+ D +D  F+ L++ LALYFQIRDD INL+  EYMK KSFCED TEGKFSFPIIH +R+ P+D R+L+ILK+RTEDVDVKK+A   M + GS  YTR +   LK  I  +I  LGG+  L +L++ LD QLEG+      SDK+    LD I
Sbjct:   42 LLEAFRYINSMPGKNVRGRMIDCFQLWMKVESNEVLDEIKNIVGDLHNASLMIDDIEDNSKLRRGIPVAHSIFGIPTVINAANYAYFLALEKCHALRNPQAMNVFVGELLNLHRGQGHDILWRDDVRCPTEEQYLEMVKDKTGGLFRLAVGLMQAFATDMKDSDFSPLVDNLALYFQIRDDYINLADDEYMKSKSFCEDFTEGKFSFPIIHSIRSNPDDTRVLSILKKRTEDVDVKKYAQSLMIEHGSLEYTRAKCRVLKTEIVEQIEVLGGNEPLMKLMDLLDVQLEGIH-----SDKSARKELDRI 344          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: L8H3G3_ACACA (Geranylgeranyl diphosphate synthase 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3G3_ACACA)

HSP 1 Score: 365 bits (936), Expect = 1.440e-121
Identity = 175/278 (62.95%), Postives = 219/278 (78.78%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRDFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIE 840
            L+EP+ Y+ QVPGK+VRGKLID+F  WL+I   E+  IK +V MLHN+SL++DDIEDNS LRRG+PVAH +YGVAS IN ANYVYF AL +  ++ NP+A   F+ E +NLH GQG+DI WRD   CPTEEEY+ MVLDKTGGLFRLAV L+QAFS D RD+  L+N+LA YFQ+RDD INL S ++M  K FCED+TEGKFSFPIIH +RA P+DHRLL+ILKQRT DV++KK+AV++M+Q GSF YTR+ L  L E+I  EI  LGG+  L +++E
Sbjct:   15 LLEPYEYLLQVPGKDVRGKLIDSFNKWLQISEPELNQIKTIVSMLHNSSLLIDDIEDNSVLRRGLPVAHKVYGVASAINCANYVYFVALQQCASMNNPKASAMFLEEMINLHHGQGFDIFWRDHQICPTEEEYKKMVLDKTGGLFRLAVKLIQAFSKDERDYIPLVNKLAYYFQVRDDFINLQSQDFMDHKGFCEDITEGKFSFPIIHSIRAVPHDHRLLSILKQRTNDVELKKYAVKYMEQTGSFEYTRNILKGLHEDIVQEIDRLGGNDLLMKIVE 292          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: B7G3T2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3T2_PHATC)

HSP 1 Score: 364 bits (934), Expect = 8.390e-121
Identity = 181/300 (60.33%), Postives = 231/300 (77.00%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEI-KTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRD--FTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGLDLAAPSSDKN 897
            L+E F YI+ VPGK+VRGKLID FQ WLK++  EI  +IK++VG LHNASL++DDIEDNSKLRRG PVAHSI+G+   IN +NYVYF AL +++AL +P A++ FV E LNLHRGQG DI WRD+ RCPTE EY  MV DKTGGLFRLAVGLMQ F+   RD  F++L+N LA+YFQIRDD INL+  EYMK KSFCEDLTEGKFSFPIIH +R+  +D R+L+ILKQR +DVDVK++A   +K +GS  YTR++  +LK ++  EI  LGG+  L ++++ LD QLE + + AP   ++
Sbjct:   25 LLEAFRYINSVPGKDVRGKLIDCFQLWLKVESTEILDSIKDIVGDLHNASLLIDDIEDNSKLRRGNPVAHSIFGIPQVINCSNYVYFLALEKVHALNSPTAMQVFVGELLNLHRGQGHDIAWRDSIRCPTEGEYLTMVQDKTGGLFRLAVGLMQCFATTHRDTDFSNLVNNLAMYFQIRDDFINLADEEYMKSKSFCEDLTEGKFSFPIIHAIRSDESDTRILSILKQRPDDVDVKRYAQVLLKDSGSLDYTREKCSALKRDVVAEIGNLGGNPPLLKVLDMLDVQLEKMSIDAPGERRS 324          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: A0A8J2WNE4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WNE4_9STRA)

HSP 1 Score: 361 bits (927), Expect = 5.950e-120
Identity = 177/285 (62.11%), Postives = 224/285 (78.60%), Query Frame = 1
Query:    7 LMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKTIKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSD-DRRDFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQL 858
            ++EPF YIS+ PGK+VRG LIDAF  WLKI  +++  IK ++  LHNASL+VDDIED S+LRRG PVAH+I+GV  T+N ANY YF AL   + L +P+AL  FV E LNLHRGQG DI+WRDT + P+E+EY +MVLDKTGGLFRLAVGLM AFS  D+ +F  L+++LALYFQIRDDL+NL S EY   KS+CEDLTEGKFS+PI+H +RA+P+D RLLNILKQ+TE++DVKKHAVE+M+  GSF  TR  L ++K +I+  I+ LGGH  L +L+E LD Q+
Sbjct:   14 ILEPFAYISETPGKDVRGALIDAFNVWLKIPPEKVTQIKSIISRLHNASLLVDDIEDGSQLRRGKPVAHAIFGVPYTLNAANYAYFVALEECHRLGSPEALSVFVEELLNLHRGQGQDIVWRDTQKVPSEKEYYSMVLDKTGGLFRLAVGLMAAFSARDKSEFRELVDQLALYFQIRDDLVNLKSDEYALSKSYCEDLTEGKFSYPILHAIRARPDDTRLLNILKQKTENIDVKKHAVEFMESVGSFEKTRAALAAIKGDIASAIAALGGHDQLVKLVEKLDAQV 298          
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Match: A0A7S2MBH1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MBH1_9STRA)

HSP 1 Score: 360 bits (925), Expect = 5.130e-119
Identity = 184/312 (58.97%), Postives = 229/312 (73.40%), Query Frame = 1
Query:    1 QELMEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKT-IKEVVGMLHNASLMVDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQALESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGLMQAFSDDRRD--FTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGKFSFPIIHCVRAKPNDH--RLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRDRLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGLDLAAPSSDKNDTAILDSI 921
            Q L+E + YI+ VPGKNVRGKLID FQ WLK+  + +   IK+++  LHNASLM+DDIEDNSKLRRG+PVAHSI+GVA  INTANYV+F  L R +AL N QA++ FV E LNLHRGQG DI+WRD  +CP EEEY  MV+DKTGGLFRLAVGLMQA S + +D  F+ L+N L LYFQIRDDLINL   +Y K K+FCEDLTEGKFSFPI+HC+R   ++   RLL+IL+QRTEDVDVK +A   MKQ+GS  YT ++ + LKE I  +I  LGG+V L +L+E L   ++GL+ A   +         S+
Sbjct:   48 QALLESYRYINSVPGKNVRGKLIDCFQLWLKVDSESVLAEIKQIISDLHNASLMIDDIEDNSKLRRGVPVAHSIFGVAPVINTANYVFFLGLERCHALNNAQAMQVFVSEILNLHRGQGHDIMWRDDVQCPAEEEYCNMVIDKTGGLFRLAVGLMQACSTENKDTNFSPLVNNLGLYFQIRDDLINLVDDDYFKAKTFCEDLTEGKFSFPIVHCIRLNKDEAGTRLLHILRQRTEDVDVKLYAQNLMKQSGSLRYTWEKCVKLKEEIVEQIECLGGNVPLLKLVEYLHTNVKGLEEAVDETSSEPLKPAPSL 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5878.13373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJS2_ECTSI5.160e-17884.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2S248_9STRA6.150e-13267.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4JG93_9STRA3.830e-12765.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
F0Y476_AURAN5.240e-12666.20Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1ZPT9_TRICV9.970e-12461.74Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9WV59_9STRA2.840e-12362.01Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
L8H3G3_ACACA1.440e-12162.95Geranylgeranyl diphosphate synthase 1, putative n=... [more]
B7G3T2_PHATC8.390e-12160.33Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8J2WNE4_9STRA5.950e-12062.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2MBH1_9STRA5.130e-11958.97Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5878contigH-elongata_contig5878:6298..10793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score507.7
Seed ortholog evalue3.8e-141
Seed eggNOG ortholog2880.D8LJS2
KEGG rclassRC00279
KEGG koko:K00804
KEGG ReactionR01658,R02003,R02061
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00367
GOsGO:0003674,GO:0003824,GO:0004311,GO:0004337,GO:0004659,GO:0016740,GO:0016765
EggNOG free text desc.geranylgeranyl diphosphate biosynthetic process
EggNOG OGsCOG0142@1,KOG0777@2759
EC2.5.1.1,2.5.1.10,2.5.1.29
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPolyprenyl synthetase-related
Ec32 orthologEc-12_003060.1
Exons8
Model size1338
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5878.13373.1prot_H-elongata_contig5878.13373.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5878 7277..10784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.2277124-UTR-H-elongata_contig5878:6297..67101622930953.2277124-UTR-H-elongata_contig5878:6297..6710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5878 6298..6710 -
1691679638.528659-UTR-H-elongata_contig5878:6297..67101691679638.528659-UTR-H-elongata_contig5878:6297..6710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5878 6298..6710 -
1622930953.2492766-UTR-H-elongata_contig5878:7275..72761622930953.2492766-UTR-H-elongata_contig5878:7275..7276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5878 7276..7276 -
1691679638.5388544-UTR-H-elongata_contig5878:7275..72761691679638.5388544-UTR-H-elongata_contig5878:7275..7276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5878 7276..7276 -
1622930953.4252915-UTR-H-elongata_contig5878:10784..107931622930953.4252915-UTR-H-elongata_contig5878:10784..10793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5878 10785..10793 -
1691679638.6044958-UTR-H-elongata_contig5878:10784..107931691679638.6044958-UTR-H-elongata_contig5878:10784..10793Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5878 10785..10793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.28988-CDS-H-elongata_contig5878:7276..74651622930953.28988-CDS-H-elongata_contig5878:7276..7465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 7277..7465 -
1691679638.5467114-CDS-H-elongata_contig5878:7276..74651691679638.5467114-CDS-H-elongata_contig5878:7276..7465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 7277..7465 -
1622930953.3150132-CDS-H-elongata_contig5878:7710..78451622930953.3150132-CDS-H-elongata_contig5878:7710..7845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 7711..7845 -
1691679638.5546489-CDS-H-elongata_contig5878:7710..78451691679638.5546489-CDS-H-elongata_contig5878:7710..7845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 7711..7845 -
1622930953.3332214-CDS-H-elongata_contig5878:8629..88051622930953.3332214-CDS-H-elongata_contig5878:8629..8805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 8630..8805 -
1691679638.5625937-CDS-H-elongata_contig5878:8629..88051691679638.5625937-CDS-H-elongata_contig5878:8629..8805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 8630..8805 -
1622930953.3521311-CDS-H-elongata_contig5878:9124..92811622930953.3521311-CDS-H-elongata_contig5878:9124..9281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 9125..9281 -
1691679638.5704908-CDS-H-elongata_contig5878:9124..92811691679638.5704908-CDS-H-elongata_contig5878:9124..9281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 9125..9281 -
1622930953.3737526-CDS-H-elongata_contig5878:9575..96841622930953.3737526-CDS-H-elongata_contig5878:9575..9684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 9576..9684 -
1691679638.5783684-CDS-H-elongata_contig5878:9575..96841691679638.5783684-CDS-H-elongata_contig5878:9575..9684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 9576..9684 -
1622930953.3879879-CDS-H-elongata_contig5878:10447..105241622930953.3879879-CDS-H-elongata_contig5878:10447..10524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 10448..10524 -
1691679638.5856345-CDS-H-elongata_contig5878:10447..105241691679638.5856345-CDS-H-elongata_contig5878:10447..10524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 10448..10524 -
1622930953.406763-CDS-H-elongata_contig5878:10712..107841622930953.406763-CDS-H-elongata_contig5878:10712..10784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 10713..10784 -
1691679638.593179-CDS-H-elongata_contig5878:10712..107841691679638.593179-CDS-H-elongata_contig5878:10712..10784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 10713..10784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5878.13373.1

>prot_H-elongata_contig5878.13373.1 ID=prot_H-elongata_contig5878.13373.1|Name=mRNA_H-elongata_contig5878.13373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
MEPFHYISQVPGKNVRGKLIDAFQAWLKIQVDEIKTIKEVVGMLHNASLM
VDDIEDNSKLRRGIPVAHSIYGVASTINTANYVYFQALHRIYALKNPQAL
ESFVLEHLNLHRGQGWDILWRDTNRCPTEEEYEAMVLDKTGGLFRLAVGL
MQAFSDDRRDFTSLLNRLALYFQIRDDLINLSSPEYMKGKSFCEDLTEGK
FSFPIIHCVRAKPNDHRLLNILKQRTEDVDVKKHAVEWMKQAGSFVYTRD
RLLSLKENISVEISTLGGHVGLGRLIEGLDRQLEGLDLAAPSSDKNDTAI
LDSI*
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mRNA from alignment at H-elongata_contig5878:6298..10793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5878.13373.1 ID=mRNA_H-elongata_contig5878.13373.1|Name=mRNA_H-elongata_contig5878.13373.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4496bp|location=Sequence derived from alignment at H-elongata_contig5878:6298..10793- (Himanthalia elongata Himel1 dioecious)
CAGGAGCTTATGGAGCCGTTCCATTACATCAGCCAGGTTCCAGGGAAAAA TGTCCGGGGCAAGCTCATCGACGCCTTTCAGGTGACCTACAGCGAGCAGT GATCCTGTATTTGGATGTCGTACGCTTTCTACTTCAGTTCACAGCGAAAA GGCTTTTCAGCGTCGCCATAACTCGCTGTGGAGCAGACGCGCTACAGTAA ACACTGCTTGGTCTTCAAGAGCATTCTGAAGCGCTCAACGACGGAGATGT ACTTCCGGCCTCTTCACAGGCTTGGCTCAAGATCCAGGTGGACGAGATCA AGACGATCAAGGAGGTTGTGGGGATGCTGCACAACGCCAGTCTCATGTGA GCCCCACTAGTAATCGTTGTTCCGGTGCAGTAGCTTGTTGTGTGCCACGT GATAAATTCGGCGCGCGCTCCAAAATTCCGCTTCGACTTGACTTTCATGG TTGTACACGTACAAGGGGTTGAAGTTCGACGGGGGTAAACTCGTCAATGC TTTCGTTAGTGATAATACGGTTTCATGGTGTGATAAGATCGATAGACTAT TTGTGGAGTAATCTTCAGCAACTCTATCCCCGTGAGTCAGGAAAATCGCA AATGGGTTTTGTCTGATCTTGATATTGTTACGTTTTAAAACTAAATAATT AGCTCTGTTTATAGAGCATTCATCACTCTCTGCCGATGAGGTGCAATACA GTATGCCATTGAAAGCGCTAGGTTACCAATCTCATGTACCCTACGACGTT GCCCATCCCATCTTGCATATGGTCCTAAGGGATCATCCCATCCCGTTTCT TCCCGCATCAACCTGTCTACTCCCACTTCACGCCTACCGGGTACATTTTT TTCATCGCAATGCAAGATCAGTACTTACTCCTAGTGAACACCTCGTCAAC AAACGGTCAAACTTTGCTTGCTCCCATTCTTCAGAAATTAAAGAATCGCA CATGTTAGGTTTCGAACCCATGACTTCTGGACTAAAAAGCTTACGTGGTT ACCCATTGAGCTCCACGGGCGGCAAGTGTACAGAAAAAGCATCAGTGTTA TGCCACCTCGTTGTTTCTCATCCCAAAGCCCCATATGTTATCGAACATCG GGCCTTCAGGGTGGACGACATTGAGGACAACTCCAAACTCAGGAGGGGAA TTCCCGTGGCACATTCTATATACGGGGTGGCGTCAACAATCAATACCGCC AACTACGTATACTTTCAGGTGAGCTGGGGAAACGTAACGGCGTACTTCTC CGCGTTCTCAACATTATTATTTTTATTTGTCTGGGTTACTATGGTAATCC ATATGCGTTGCTAACACATCTTACCGAACTAAAACGCCTCGGTACTTCGA CGTCTTACCGAGAGCTCTTATTTCTGTGTTCTGCATGCGTGGGAGAGCTC GTCAGTCGAAGCACCCGAGGTTTTCCCCATCGCGAATCATGATATTCCTC TCGTGATGGTTCGCTGACCCTACAAGCTCTGATCGATGTGATCGTACCAA CGTTGACCGCAGGCATTGCATCGGATCTACGCTCTAAAAAATCCCCAAGC GCTCGAGAGCTTCGTCCTCGAGCACCTCAACCTGCATCGCGGACAGGGGT GGGACATACTGTGGCGAGACACGAACCGGTGTCCGACGGAAGAAGAATAT GAGGCTATGGTCCTAGACAGTGAGTTTCGCTCACGGCAATCGCCCCCCCC CTGCAACCGTTTCGGCATAATCTTCAAAGTACAGAGGTTCGGGGAGGCCC CCTCCTGCAGTGCTGTAGCAGGTTTTGTGTGTGTTTCCGTATGACGAGGT ATATAATCGTTCGCCGGACCATGATGACATCATAAAACGCTGCTCACTTT CACCGTCCGAGTGCTTTTTGCGACTTCCAACTGCCTGACTCCAGTCTAAT GCTTAACGAATGGCCCACATGCTTGGTATATTTCTGTCCATTTCGGCTTT TTTCACATATATAACCGTCGTGTCCACGGCTTTCGAAGAGACGGGGGGCT TGTTCCGACTGGCAGTGGGCCTCATGCAGGCTTTCAGCGACGATCGACGC GACTTCACGTCGTTGCTCAACCGGCTCGCCCTGTACTTTCAGATTAGGGA CGATCTTATTAACCTTTCCAGTCCAGAGTACATGAAGGGAAAGAGCTTCT GTGAGGACCTCACGGTGGGTTTATTTGGCAATGATACTCTCCACAAAAGG GAAGATATCACACTATCATATTAAAGCATGTTCCAGATAATGCATAAATA AAAATGGCAAGGTCGATGTTTTGTATTTTCCCTTTAAAAACATATACGGT ACTATTAATAAACTCATTCCAACTCTTCGAACATCCACGCCTTCTTAGCT CCATGAGAGGTGCAGTCCAGCGGGCCAACTATCGTCAGGTTCGAGCGTGT ATATGAGTACCTTTGAGCACAAAATCATCACATGTGATTAATCGTGTTCC CCAATAGTAAGTTAGTTCATCGGGTGAACGGTATAATGTCGGGGAGAAGT CCACCATTATCATACCGTACACATACATTATTCATCATGTGTGGGACGTC AAACCAGAGCTTAGACAGTGTGTTGTAAAGGGATTTTTGTTTTAGTATTG TTGGGCGTATGAAAATTAAGGATGTTGGTAAAGCCCGATAGAGCTTATTA TATACTGTAGATATGATTATTAGGGTTAGGAAACAGAAAAAAAGGGGGTT CTCATACTAGAGCCTAGGCGTTTTGTACACAACACTGTCCACTGTTATGA ATTATGAATCAAGCCTCGACTTTGTCACCCTTGTCTTAAAACTTATTTGG AAAAGGTGGAGTTCGATGTCGACTTTAATAGCTGCTCGCCTATAGCGGTG GTCATTTTCCAAGTGCCCACGGAAGCATAACTATTCCAGCTGGTCTCTCG CAATTTCTTAGCCGACTTGCTTGTCTACCCGACCCATGACTCTCGAAGGA AGGGAAATTCTCTTTCCCAATCATCCACTGCGTGAGAGCGAAGCCGAACG ACCACCGCTTGCTGAACATCCTCAAGCAGAGGACGGAAGACGTGGACGTA AAAAAACATGCGGTGGAGTGGATGAAGCAGGCGGTAAGATGAAGAGAAAG CACTATTAAATACTGCAGTACTGTACTCCAGGACAATCAAAGACATTTCT AGTCTTTCAACGCACTAAACTGATGTGACGCTACTGCTTATGTGCGTAGT TTAAACAGGAAACAGGTGTAAAAAGTAAAAACGCCACCGAATATAAAAAC CTAAGCAATTCACCCGATTTAACATGCGTTTCGCCAAACTTGGCTGCTCG CTGGTATTATCATTACTGGTAACGTCAGGGTTCATTTGTGTACACCCGAG ATCGACTGTTGTCTCTCAAGGAAAATATCTCGGTGGAGATCTCGACGCTT GGTGGACACGTTGGACTCGGGCGGCTCATTGAGGGATTGGATAGACAGCT GGAGGGTCTAGACCTTGCCGCGCCGTCAAGCGATAAAAACGACACCGCTA TACTCGACTCGATCTAAGGTGCAATGGACATCGCACGCAATGGGCGATCT CTTGATAGTGGGCATGTAAACGCTGATTATCATAGCTAAACATGTGTGCG TAATAATGCGCGGCAGCAGAATCACTGCACGTTCACTCATTTAGAAAATC TCAGCGCGTCGATTAAGTGCAAAAATATGGCAATCTTTATTCCCGTTTCA CATCCCAATCAGCCGATCTTTGGTGCATTCCGGTGGCTGTTATTGTGCGA GGTCGTGGATGAAGTTCAATCCCCCAAACAAAATATTTCTTAACCTCAAA CGTTTTGCGACATGGCTAACCCAGTAAGAAGGCTAACCGGTGATCTTGCT TTTCTTCTCCCATAGATGCCATTTGGTCCATTCCCATCCGCGATAATGTT TCGCTAAACTGAAACACGAGACAGTTCCGTATAGATCATAACAAAAATAT ACTCGCGTAGTCTATACCCTAAGCGACAATCCTGAGGGAACGCTTGAAGC TGATGGTGTTAAGATTTCGGCTGCTCTGCTGTCGCCGATGCTCCCCCTGC CCCTGCCCCCGCCCCGCTCTTGATTTTATCCAGCTCCGCCCTCAGCTGGT TGCAGAAGTCGTCGTCTTTATCGTCGTCATCCCAGTCATCCTTATTATGG TTCGTTCGGAGAAACGTGAAGCGCGATATAAAAGTTCACAATCGTATTGG TAACTGCATCGAATAGTGGGTTTTGTTGGGACGTAAAAAAAAAAAATCAT TGATTACAGCGCCAGATTGCGCGGTTATGTGCAATTTAATAAAAATACAT ACATACATAGATACACACCGTGATACAGGAGGCATCATGGCAACGACCAA CGATAGTCGAACACTGATGATATTATATTTTCACCTTCAGCGTGTGTAGG TGTAGGATAACACGATCAAGTGCGATACTGTATCATTGGCCATTCAACAC GCTAGGCTCTATCCATCCTGCCTTCTGCATTGTTGCTTATCCCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig5878:6298..10793-

>mRNA_H-elongata_contig5878.13373.1 ID=mRNA_H-elongata_contig5878.13373.1|Name=mRNA_H-elongata_contig5878.13373.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig5878:6298..10793- (Himanthalia elongata Himel1 dioecious)
ATGGAGCCGTTCCATTACATCAGCCAGGTTCCAGGGAAAAATGTCCGGGG
CAAGCTCATCGACGCCTTTCAGATGGAGCCGTTCCATTACATCAGCCAGG
TTCCAGGGAAAAATGTCCGGGGCAAGCTCATCGACGCCTTTCAGGCTTGG
CTCAAGATCCAGGTGGACGAGATCAAGACGATCAAGGAGGTTGTGGGGAT
GCTGCACAACGCCAGTCTCATGCTTGGCTCAAGATCCAGGTGGACGAGAT
CAAGACGATCAAGGAGGTTGTGGGGATGCTGCACAACGCCAGTCTCATGG
TGGACGACATTGAGGACAACTCCAAACTCAGGAGGGGAATTCCCGTGGCA
CATTCTATATACGGGGTGGCGTCAACAATCAATACCGCCAACTACGTATA
CTTTCAGGGTGGACGACATTGAGGACAACTCCAAACTCAGGAGGGGAATT
CCCGTGGCACATTCTATATACGGGGTGGCGTCAACAATCAATACCGCCAA
CTACGTATACTTTCAGGCATTGCATCGGATCTACGCTCTAAAAAATCCCC
AAGCGCTCGAGAGCTTCGTCCTCGAGCACCTCAACCTGCATCGCGGACAG
GGGTGGGACATACTGTGGCGAGACACGAACCGGTGTCCGACGGAAGAAGA
ATATGAGGCTATGGTCCTAGACAGCATTGCATCGGATCTACGCTCTAAAA
AATCCCCAAGCGCTCGAGAGCTTCGTCCTCGAGCACCTCAACCTGCATCG
CGGACAGGGGTGGGACATACTGTGGCGAGACACGAACCGGTGTCCGACGG
AAGAAGAATATGAGGCTATGGTCCTAGACAAGACGGGGGGCTTGTTCCGA
CTGGCAGTGGGCCTCATGCAGGCTTTCAGCGACGATCGACGCGACTTCAC
GTCGTTGCTCAACCGGCTCGCCCTGTACTTTCAGATTAGGGACGATCTTA
TTAACCTTTCCAGTCCAGAGTACATGAAGGGAAAGAGCTTCTGTGAGGAC
CTCACGAGACGGGGGGCTTGTTCCGACTGGCAGTGGGCCTCATGCAGGCT
TTCAGCGACGATCGACGCGACTTCACGTCGTTGCTCAACCGGCTCGCCCT
GTACTTTCAGATTAGGGACGATCTTATTAACCTTTCCAGTCCAGAGTACA
TGAAGGGAAAGAGCTTCTGTGAGGACCTCACGGAAGGGAAATTCTCTTTC
CCAATCATCCACTGCGTGAGAGCGAAGCCGAACGACCACCGCTTGCTGAA
CATCCTCAAGCAGAGGACGGAAGACGTGGACGTAAAAAAACATGCGGTGG
AGTGGATGAAGCAGGCGGAAGGGAAATTCTCTTTCCCAATCATCCACTGC
GTGAGAGCGAAGCCGAACGACCACCGCTTGCTGAACATCCTCAAGCAGAG
GACGGAAGACGTGGACGTAAAAAAACATGCGGTGGAGTGGATGAAGCAGG
CGGGTTCATTTGTGTACACCCGAGATCGACTGTTGTCTCTCAAGGAAAAT
ATCTCGGTGGAGATCTCGACGCTTGGTGGACACGTTGGACTCGGGCGGCT
CATTGAGGGATTGGATAGACAGCTGGAGGGTCTAGACCTTGCCGCGCCGT
CAAGCGATAAAAACGACACCGCTATACTCGACTCGATCTAAGGTTCATTT
GTGTACACCCGAGATCGACTGTTGTCTCTCAAGGAAAATATCTCGGTGGA
GATCTCGACGCTTGGTGGACACGTTGGACTCGGGCGGCTCATTGAGGGAT
TGGATAGACAGCTGGAGGGTCTAGACCTTGCCGCGCCGTCAAGCGATAAA
AACGACACCGCTATACTCGACTCGATCTAA
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