mRNA_H-elongata_contig5872.13366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5872.13366.1
Unique NamemRNA_H-elongata_contig5872.13366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5872.13366.1 vs. uniprot
Match: A0A6H5KLQ2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ2_9PHAE)

HSP 1 Score: 541 bits (1394), Expect = 3.490e-168
Identity = 473/1274 (37.13%), Postives = 595/1274 (46.70%), Query Frame = 1 
Query:    1 ASPPAPPQRALELVKEEVNRALKAFSTRPLKGFTCSPRPSDLLRPFDVCKDARVTYPEFYAGLRGLGVGLTADESESLAREVDNDDTGLVDRKMFETAAVERWGRDSTTRE------LTSDPDRSRGVVTRSATPGGEINPPHCTGKYNSRGNNHDRGAGVFPGKKRTTESIFSQDQYLPPPS--------------FETGGSATKTPRVRGGSCSPTVSFNQWRRMTRRWGSVDETRPSAVAGARG-------------NGH-------------IVRRSLADETSWNADRNG-RASQRGCNLVSTLRSLLVRDDFSDEAIRRSLQQAPGRRG-----WGRHIHGLQRQKNDAHAASSGAGKSKEARGGAD--RRNTPSRGEPHSANPSSVSAN---------------------VKNIRGRGEENASTDEGASKPASALDLSRAYASRAEKTLMLRSRGDLVGLRRAFSRADLSASGVLSSMEMERSILRRFGAGLGDREARALAAQYRVDYRGHNMVDYVHLLDNLEAREAGLTGEEVE-------------WERPRRDKVKSHDAGTMDIT----------------MPEAAGFRPRTGHRRYSKKN-HDATESVLV-GDVPLEKSQLVRRARNKTLALLDQHGTRSIDRVFGFIDNARTGIVNAEEFRDGLRVLSGTDPLSDIEYKVLFRDVCTDKGRIKYRDLT---------------------------------------QTLRAAKAKESWESTQRKMARQAELPSGGRGSGIHLRHSKILDYIPE-----NDEVSVVPGLSGGRRHMEWRRRALVLQRLRDRVKKIQGDRNGAGPLYEMFQRQGGA---GKRDTAEMKQSVAC--------------KSPS-LHPLALRRGLSSLGVPLGDDDFVAIVAAADPDRRGEVSYVDFYKSMWPHQLRDD--------HGVTTEMRPTSTPP--SLSSQSFDQDMSSDNLVSARNIEKAVQSENT-------RQITMDLAPPADM--NLDGGIFHRNPATDGCTNPNFTTTMINSWVIG------------KYRSKRRQPP--------TRARSSPHTLPGSLVKNGPFGVEGRSPQRWSETSEEAEVTFRRRLGMKMRRPHSYSSAPSFAKRHESCGGWDSIGILSPRQAPVDYAVDGYGHGNLRGRAYTPKNNDLGFGSERMRSDSM------------RGHRYESLHSWRRS-------------RSLSLDANMRYGHRARSTVQHLLRDDSWL 3126
            A PP PP RALELVKEEV+RALKAFST+P+KG   +P PSDLLRPFDV KD RVTY EF  G+ GLG+GLTA E+E+LA+ VD + TGLVDR  FE AA   WG  S+ R+       TS P    G V      GG +   H  G++ S     D G+ V  G+K      ++  + LPPP                ET G   +  R RG S   T+SF+ W++   R    +    + VA                 NGH                      + +N   N  + SQ+    + TLRSLL RD   DE     +     +       +G  I G +R++     +   AG      GG D  +R   SR E   +      A+                            G+ N    +  ++    L  ++A A+RAEK L LRSRGDLVGLRRA S+AD SASGV+S  EMER ILRRFG GL D EAR LAA YR D+ G +MVDY  L DN+E +E G+ G  V              WE  +    +    GT   +                M  AAG R R   RRY ++   DA +   V G  P E SQLVRRAR KTLALLD+HGTRS+D VFG +D A T  VN+ E R+ LR+L G+D LS+IE++ LF+ +   + RI YRD T                                        TLRA++  E  E TQRK+  QA LP+ GRGS IH RHS +LD+          + S   GL GGR+H E RR+ALV QRLRD VK+IQ  +N A P+++MF+++G A   G  D A                      ++PS L P ALR GL SLGVPLGD+DF  ++AA DPDRRG+VSY  F +++  H LR D         G   E RP+S PP  + S Q   Q                             R+  M+LAPPAD   +L+GG+FH N AT GC NPNFTTTM+ +   G             YR KRRQ P        T  R+  H     +V +G     G   Q    T  EAE  FR+ LG+KMR                    W             D    G GH   RGR++TP+++DLGFGSERMRS S             R  R      WRR+             RSLSL A  RYG  ARS+VQHLLR D WL
Sbjct:   80 APPPVPPPRALELVKEEVHRALKAFSTKPVKGEPKAPLPSDLLRPFDVSKDGRVTYREFRTGILGLGIGLTAHEAEALAQVVDREGTGLVDRGPFEAAATRDWG--SSGRDGGWQGRPTSAPGSVPGAVAEPQIGGGAL---HSPGEHTSHPQVDD-GSIVRDGEKG-----YAGGEVLPPPPTPSEAPEPLRQWSRLETTG---RPSRNRGPS---TLSFDCWQQNANRRNESNNAADAVVAKTPASTGSSIGRSDGNVNGHHKHSRDTSTXXXXXXXXXXXXNSDYNTHNNNLQPSQKYLQSLQTLRSLLQRDGVFDEVKSTPIADETNKSNERSLSFGTEIRGRRRERRLQEQSQHQAGSRLSGGGGGDGKQRVDLSRVEHRRSREEDCRADSPXXXXXXXXXXXXXXXXXXXXXXXXSTGKTNVVVSD--TEAPDHLARAQAVAARAEKILQLRSRGDLVGLRRAVSKADPSASGVISRREMERVILRRFGTGLEDDEARHLAACYRKDFNGRSMVDYGRLFDNMEVQEGGVYGRGVTPSPGPSKSSGRGCWEDQQHSSSRDGGGGTRARSASVSAAGEXRRRGSRPMRAAAGGRTRHSQRRYWRRGVPDAADDNFVRGGAPAEASQLVRRARAKTLALLDRHGTRSVDCVFGLVDQAHTQTVNSGELREALRILGGSDTLSEIEHRALFKGISKGRDRIHYRDKTYPNTQRYSRGPAASVVATTCFIYTLFFGTPLVLHKQELLDTLRASEVAEHRERTQRKLQHQAGLPTSGRGSAIHWRHSDVLDWDAPPAGGGGRKGSRGVGLKGGRQHKESRRQALVFQRLRDGVKQIQEKQNSAWPVFDMFRQRGRARAGGYCDAAAXXXXXXXXXXXXTINNDDDPDRTPSPLSPSALRAGLGSLGVPLGDEDFDTLIAATDPDRRGKVSYPTFCEALDLHPLRGDPPDAHRTASGSEEEERPSSAPPVPTKSRQHNRQXXXXXXXXXXXXXXXXXXXXXXXXXGGYIRRRAMELAPPADAREDLEGGVFHVNEATCGCANPNFTTTMVPASTGGGCRANNNRPRPDSYRPKRRQSPAPAPGGTLTGVRTKSHGQTLLVVGSGGGDRVGLRDQ----TGLEAERRFRQGLGIKMR-------------------AWSD-----------DNNTGGRGH--RRGRSHTPRDSDLGFGSERMRSTSRCDDDEDCRGGGGRRERRSGSVGWRRTGTNGDVGPGLRRVRSLSLGAERRYGDWARSSVQHLLRQDGWL 1298
[Close]
BLAST of mRNA_H-elongata_contig5872.13366.1 vs. uniprot
Match: D8LB86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB86_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 2.890e-157
Identity = 436/1183 (36.86%), Postives = 559/1183 (47.25%), Query Frame = 1 
Query:    1 ASPPAPPQRALELVKEEVNRALKAFSTRPLKGFTCSPRPSDLLRPFDVCKDARVTYPEFYAGLRGLGVGLTADESESLAREVDNDDTGLVDRKMFETAAVERWGRDST-----TRELTSDPDRSRGVVTRSATPGGEINPP--HCT------GKYNSRGNNHDRGAGVFPGKKRTTESIFSQDQYLPPPSFETGGSATKTPRVRGGSCSPTVSFNQWRRMTRRWGSVDETRPSAVAGARGNGHIV-----------------------------RRSLADETSWNADRNGRASQRGCNLVSTLRSLLVRDDFSDEAI------------RRSLQQAPGRRG---------WGRHIHGLQRQKNDAHAASSGAGKSKEARGGADRRNTPSRGEPHSANPSSVSANVKNIRGRGEE------------NASTDEGASKPASALDLSRAYASRAEKTLMLRSRGDLVGLRRAFSRADLSASGVLSSMEMERSILRRFGAGLGDREARALAAQYRVDYRGHNMVDYVHLLDNLEAREAGLTGEEVE-------------WERPRRDK---------VKSHDAGTM-------DITMPEAAGFRPRTGHRRYSKKN-HDATESVLV-GDVPLEKSQLVRRARNKTLALLDQHGTRSIDRVFGFIDNARTGIVNAEEFRDGLRVLSGTDPLSDIEYKVLFRDVCTDKGRIKYRDLTQTLRAAKAKESWESTQRKMARQAELPSGGRGSGIHLRHSKILDYIPE-----NDEVSVVPGLSGGRRHMEWRRRALVLQRLRDRVKKIQGDRNGAGPLYEMFQRQGGAGKRDTAEMKQSVACKS-----------------PSLHPLALRRGLSSLGVPLGDDDFVAIVAAADPDRRGEVSYVDFYKSMWPHQLRDD--------HGVTTEMRPTSTPPSLSSQSFDQDMSSDNLVSARNIEKAVQSENT------------RQITMDLAPPADM--NLDGGIFHRNPATDGCTNPNFTTTMINSWVIG------------KYRSKRRQPPTRA--------RSSPHTLPGSLVKNGPFGVEGRSPQRWSETSEEAEVTFRRRLGMKMRRPHSYSSAPSFAKRHESCGGWDSIGILSPRQAPVDYAVDGYGHGNLRGRAYTPKNNDLGFGSERMRSDSMRGHRYESLHSWRRS 3039
            A PP PP RALELVKEEV+RALKAFST+P+KG   +P PSDLLRPFDV KD RVTY E   G+ GLG+GLTA E+E LA+ VD + TGLVDR  FE AA   WG             TS P R  G V  S +  G ++ P  H +      G+    G     G  V P     +E+     Q+      ET G   +  R  G S   T+SF+ W++   R    +    + V                                       + S +D  + N   N + SQ+    + TLRSLL  D   DE              RRSL      RG           +H  GL+         S G G  K+        +   R E   A+                             N S     ++    L  +R+ A+RAE  L LRSRGDLVGLRRA S+AD SASGV+S  EMER ILRRFG GL D EAR LAA+YR D+ G +MVDY  L D+LE +E  L G  V              WE  +R            +S    T           M  AAG R R   RRY ++   DA  +  V G  P E+SQLVRRAR KTLALLD+HGT S+D VFG +D A T  V++ E R+ LR+L G+D LS+IE++ LF+ +   + R+ YR+L  TLRA++  E  E TQRK+  QA LP+ GRGS IH RHS +LD+        + + S   GL GGR+H E RR+ALV QRLRD V++IQ  +N AGP+++MF+R+G       ++   +VA  +                 P L P ALR GL SLGVPLG++DFV ++AA DPDRRGEV+Y  F +++  H LR D         G   + RP+                               + +             R+  M+LAPPAD   +L+GG+FH N AT GC NPNFTTTM+ + + G             YR KRRQ P  A        R+  H     +V +G     G   Q    T  EAE  FR+ LG+KMR                    W       P   PV   ++G G GN RGR++TP+++DLGFGSERMRS S  G    S H  RRS
Sbjct:  118 APPPVPPPRALELVKEEVHRALKAFSTQPVKGEPKAPLPSDLLRPFDVSKDGRVTYRELRTGILGLGIGLTAREAEELAQVVDREGTGLVDRGHFEAAATRDWGSGGGGDGGWQGRPTSAPGRVXGAVAESQSESGALHSPGEHASHPQVDDGRIAHDGEKGCAGGEVLPPPPTPSEAPEPLRQWS---RSETTG---RPSRNHGPS---TLSFDYWQQNANRRNDSNNAANAVVTNTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKSSNSDYNTHN--NNQQLSQKYIQSLQTLRSLLQLDRVFDEVKSTPIADETNKPNRRSLSFGTETRGRRCERRRQEQSQHQSGLRPSGXXXXXXSCGVGDGKQRVDSTKVEHRRFREEDGRADSPXXXXXXXXXXXXXXXXXXXXXXXXXTGNTSVVVSDTEAPDHLARARSVAARAESILRLRSRGDLVGLRRAVSKADPSASGVISRREMERVILRRFGTGLEDHEARHLAARYRKDFNGRSMVDYGRLFDSLEVKEGDLFGRGVTSSPGPSTSSGRGCWEAQQRSSSXXXXXXXXARSAPTSTAGEGRRRGSRPMRAAAGARTRHSQRRYWRRGVPDAAAADFVRGGAPAEESQLVRRARAKTLALLDRHGTPSVDCVFGLVDQAHTQTVSSGELREALRILGGSDTLSEIEHRALFKGISKGRDRVLYRELLDTLRASEVAEHRERTQRKLQHQAGLPTSGRGSAIHWRHSDVLDWDAPPAGGGDRKGSCGVGLKGGRQHKESRRQALVFQRLRDGVRQIQEKQNSAGPVFDMFRRRGRGRTGGYSDAAATVAAPTTSGNGTMNNDNDPVRTPPPLSPSALRAGLGSLGVPLGNEDFVTLIAATDPDRRGEVTYPTFCEALDLHPLRGDPSDAHRTASGSEEQERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAGKGRREGXXGYARRRAMELAPPADTREDLEGGVFHVNEATYGCDNPNFTTTMVPASIGGGCKANNNHPRPDAYRPKRRQSPAPAPGGTLTGIRTKSHGQTLLVVGSGGGDRVGLRDQ----TGLEAERRFRQGLGVKMR-------------------AWSGDNNTDP--TPV---LNG-GRGNRRGRSHTPRDSDLGFGSERMRSTSSDG---VSKHCRRRS 1257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5872.13366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ2_9PHAE3.490e-16837.13EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LB86_ECTSI2.890e-15736.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5872contigH-elongata_contig5872:1323..5761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-27_004810.1
Exons6
Model size3126
Cds size3126
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5872.13366.1prot_H-elongata_contig5872.13366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5872 1323..5761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.995208-CDS-H-elongata_contig5872:1322..16711622930951.995208-CDS-H-elongata_contig5872:1322..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 1323..1671 +
1691679638.0754764-CDS-H-elongata_contig5872:1322..16711691679638.0754764-CDS-H-elongata_contig5872:1322..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 1323..1671 +
1622930952.0177853-CDS-H-elongata_contig5872:1812..31291622930952.0177853-CDS-H-elongata_contig5872:1812..3129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 1813..3129 +
1691679638.0840364-CDS-H-elongata_contig5872:1812..31291691679638.0840364-CDS-H-elongata_contig5872:1812..3129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 1813..3129 +
1622930952.0386953-CDS-H-elongata_contig5872:3357..34941622930952.0386953-CDS-H-elongata_contig5872:3357..3494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 3358..3494 +
1691679638.0932271-CDS-H-elongata_contig5872:3357..34941691679638.0932271-CDS-H-elongata_contig5872:3357..3494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 3358..3494 +
1622930952.0540836-CDS-H-elongata_contig5872:3794..40791622930952.0540836-CDS-H-elongata_contig5872:3794..4079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 3795..4079 +
1691679638.1031706-CDS-H-elongata_contig5872:3794..40791691679638.1031706-CDS-H-elongata_contig5872:3794..4079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 3795..4079 +
1622930952.071648-CDS-H-elongata_contig5872:4484..51821622930952.071648-CDS-H-elongata_contig5872:4484..5182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 4485..5182 +
1691679638.1133165-CDS-H-elongata_contig5872:4484..51821691679638.1133165-CDS-H-elongata_contig5872:4484..5182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 4485..5182 +
1622930952.0928786-CDS-H-elongata_contig5872:5421..57611622930952.0928786-CDS-H-elongata_contig5872:5421..5761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 5422..5761 +
1691679638.1250439-CDS-H-elongata_contig5872:5421..57611691679638.1250439-CDS-H-elongata_contig5872:5421..5761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5872 5422..5761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5872.13366.1

>prot_H-elongata_contig5872.13366.1 ID=prot_H-elongata_contig5872.13366.1|Name=mRNA_H-elongata_contig5872.13366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1042bp
ASPPAPPQRALELVKEEVNRALKAFSTRPLKGFTCSPRPSDLLRPFDVCK
DARVTYPEFYAGLRGLGVGLTADESESLAREVDNDDTGLVDRKMFETAAV
ERWGRDSTTRELTSDPDRSRGVVTRSATPGGEINPPHCTGKYNSRGNNHD
RGAGVFPGKKRTTESIFSQDQYLPPPSFETGGSATKTPRVRGGSCSPTVS
FNQWRRMTRRWGSVDETRPSAVAGARGNGHIVRRSLADETSWNADRNGRA
SQRGCNLVSTLRSLLVRDDFSDEAIRRSLQQAPGRRGWGRHIHGLQRQKN
DAHAASSGAGKSKEARGGADRRNTPSRGEPHSANPSSVSANVKNIRGRGE
ENASTDEGASKPASALDLSRAYASRAEKTLMLRSRGDLVGLRRAFSRADL
SASGVLSSMEMERSILRRFGAGLGDREARALAAQYRVDYRGHNMVDYVHL
LDNLEAREAGLTGEEVEWERPRRDKVKSHDAGTMDITMPEAAGFRPRTGH
RRYSKKNHDATESVLVGDVPLEKSQLVRRARNKTLALLDQHGTRSIDRVF
GFIDNARTGIVNAEEFRDGLRVLSGTDPLSDIEYKVLFRDVCTDKGRIKY
RDLTQTLRAAKAKESWESTQRKMARQAELPSGGRGSGIHLRHSKILDYIP
ENDEVSVVPGLSGGRRHMEWRRRALVLQRLRDRVKKIQGDRNGAGPLYEM
FQRQGGAGKRDTAEMKQSVACKSPSLHPLALRRGLSSLGVPLGDDDFVAI
VAAADPDRRGEVSYVDFYKSMWPHQLRDDHGVTTEMRPTSTPPSLSSQSF
DQDMSSDNLVSARNIEKAVQSENTRQITMDLAPPADMNLDGGIFHRNPAT
DGCTNPNFTTTMINSWVIGKYRSKRRQPPTRARSSPHTLPGSLVKNGPFG
VEGRSPQRWSETSEEAEVTFRRRLGMKMRRPHSYSSAPSFAKRHESCGGW
DSIGILSPRQAPVDYAVDGYGHGNLRGRAYTPKNNDLGFGSERMRSDSMR
GHRYESLHSWRRSRSLSLDANMRYGHRARSTVQHLLRDDSWL
back to top

mRNA from alignment at H-elongata_contig5872:1323..5761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5872.13366.1 ID=mRNA_H-elongata_contig5872.13366.1|Name=mRNA_H-elongata_contig5872.13366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4439bp|location=Sequence derived from alignment at H-elongata_contig5872:1323..5761+ (Himanthalia elongata Himel1 dioecious)
GCTTCACCTCCGGCGCCTCCGCAACGAGCACTAGAGCTCGTCAAAGAGGA
AGTAAACCGAGCTCTGAAAGCTTTCTCGACCCGTCCGCTAAAGGGATTTA
CCTGTTCTCCGCGACCATCAGACTTGCTTCGGCCTTTCGACGTTTGCAAG
GACGCCAGAGTGACGTATCCAGAGTTCTACGCCGGTTTGCGGGGACTCGG
AGTCGGGCTCACAGCGGACGAGTCTGAATCGCTCGCGCGCGAGGTGGACA
ACGATGACACCGGCCTCGTAGACCGTAAAATGTTTGAAACCGCGGCAGTC
GAGAGATGGGGGCGAGATTCAACAACCAGGGAACTCACGTCAGATCCAGG
TCAAAAGGGGTTCGTCAGCGATAGCTTGAGGAAACACGACGCTCCGGGGG
TTGAACAACGTGCCGTAAAGAGTGAGTACATAAGGAAAAAGGAGTGGCAA
AATTCAGCCAGAGATATCCCACGCGACAATGACCATTTAGATAGATCACG
CGGCGTCGTTACTCGCTCCGCCACTCCCGGTGGAGAAATCAATCCTCCCC
ACTGCACTGGAAAATATAATTCGCGAGGAAACAACCACGACAGAGGAGCG
GGAGTTTTCCCCGGCAAGAAGAGAACGACAGAGAGTATTTTTTCGCAAGA
TCAATATCTTCCTCCACCTTCTTTCGAAACCGGGGGCTCTGCCACCAAGA
CTCCCAGGGTAAGGGGTGGATCGTGCAGTCCGACAGTGTCATTCAACCAG
TGGCGCCGAATGACGAGAAGGTGGGGTAGTGTCGATGAGACGAGGCCTTC
TGCTGTTGCAGGCGCCCGTGGTAATGGCCACATAGTGCGTCGTTCACTGG
CGGACGAGACAAGCTGGAATGCCGATAGAAATGGGCGCGCATCGCAGAGA
GGCTGTAACTTGGTTAGCACGTTGCGTTCCTTGCTTGTACGAGACGATTT
CAGTGACGAGGCGATCCGTCGTAGCCTACAACAGGCCCCCGGTCGTCGAG
GCTGGGGACGTCATATTCACGGATTGCAAAGGCAGAAAAATGATGCGCAC
GCAGCTTCAAGCGGGGCCGGGAAAAGCAAAGAAGCACGAGGCGGCGCAGA
TCGACGAAATACACCCTCCCGTGGAGAGCCCCATTCGGCAAATCCGTCGT
CAGTGTCAGCTAACGTGAAGAATATTAGAGGCCGAGGGGAAGAGAATGCA
TCGACAGATGAAGGCGCATCGAAGCCGGCCTCGGCACTCGACCTATCACG
GGCCTACGCGTCTCGGGCCGAGAAAACTTTAATGCTTCGGTCGAGGGGGG
ATCTGGTGGGGCTGAGAAGAGCATTTTCGAGAGCAGATTTGTCCGCGTCG
GGAGTACTCTCATCGATGGAAATGGAGCGCTCAATCCTTCGACGATTTGG
AGCTGGCCTCGGTGATAGAGAGGCGCGGGCGCTTGCTGCGCAATACCGCG
TAGATTACCGTGGGCACAATATGGTGGACTATGTCCATCTGCTCGATAAT
CTTGAAGCCAGGGAAGCGGGACTCACTGGAGAGGAGGTGGAGTGGGAACG
ACCGCGACGAGATAAGGTCAAATCACATGACGCTGGAACTATGGACATCA
CCATGCCGGAAGCAGCGGGATTCAGACCACGTACCGGCCACAGGAGATAC
AGCAAAAAAAATCATGACGCCACCGAAAGTGTGTTGGTTGGTGACGTCCC
TCTGGAAAAGAGTCAGCTAGTGCGACGGGCCCGAAACAAGACCCTTGCAC
TGCTAGATCAACACGGCACTCGGAGCATTGACCGTGTTTTTGGATTCATC
GATAACGGTGTGTAATCGTCGTTGGCTATGGGGCACAGGGGCACGGGGAT
ATGACAGAGGATGAACACGCACCGTTCGGCGCGTGCAGGCAGTGGGATCA
TTCTGATATTGCTTCTTCGCGATCCATCGGCTAACGTCTCAAGAGTTGTA
TCGTGATCAAACCCTTGAATCACGTCGTCAGAACGTCAATCGCCATCATG
ACGCTCTTGCGCCTCGACTTTTACCCGCGCATCAGCCCGCACGGGGATCG
TCAACGCCGAGGAGTTCCGGGATGGTCTCAGGGTCCTCAGTGGGACAGAT
CCCCTGTCCGACATTGAATACAAGGTGCTCTTCAGAGATGTCTGCACGGA
TAAGGGGCGCATCAAGTATAGGGTGAGGAAGTCCCACAACAACTCTTCAA
TGGCTTTGTGATGCCATGCTCTGCGCGTATATGTTGCCAGTCGTGACTAG
GGTAGTGTGAAATCGTGAATATCGACACACAAAGATAAGCAGCGAGAGCA
GAAGCTTTGGGTCAAATGTTGATCAGTGTATAAACAAGCCCGAAGCATGG
GACTCGTGATGAGACGGGAATGGTGTTACCATGCAAAGAGGACGCGTAAG
ACTATCCTCGTAATATATGGTTGATTACCCGATGCCCCCGTGTGTCATTG
TCCCTTGACCCGATATGCACAGGATCTAACCCAAACCTTGAGGGCTGCAA
AGGCCAAGGAGAGCTGGGAAAGCACGCAGCGTAAGATGGCTCGTCAAGCA
GAGCTTCCATCGGGCGGTCGCGGCTCGGGCATCCACCTCCGCCACAGCAA
AATCCTGGACTATATACCCGAGAACGACGAAGTCTCCGTGGTACCCGGTT
TATCGGGAGGTAGGAGGCACATGGAGTGGCGACGGCGTGCGCTCGTACTA
CAAAGATTGCGAGACCGCGTGAAAAAGATCCAAGGTGATCGCAATGGCGC
CGGGCCGGTGAGGAACTCGCTGGTAAACTTGCGCAGCTCGCTTCGGCAGC
GTATTTATCTCCCGTTCCAAGGAGTGTCCGGGTATTATTGGCGCGAATAT
ATGCATGTATTGTTTGCGGCATATATTACATTACCACTCGGACCTCGGGA
GAGAAAGTTGATGTTTTGGGGGCGCTTGTGGAACGGCCACAAAGGCGGTC
CAAAGCCGTGACAAGGATCACAATAGCGTATCAATTCTACGTCGACTAGA
CCCTGAGCGACACGTTGCCAAGCCGCACCCAGTACTGGAGGTCTCGATCT
CGCGAGTGGGGCCATGACCCGTACTCATCATCCACCACATTAACAAACTA
AGAAAGCGCGACATCTTGCTCACCATCAGAGGCGTTCGTCCACCGTCTTG
ACTCCTTTCCAGTTGTACGAGATGTTCCAAAGACAAGGCGGGGCCGGAAA
GCGCGATACGGCCGAGATGAAGCAGAGCGTCGCCTGTAAATCTCCTTCTC
TGCATCCGCTAGCATTGCGACGAGGGCTAAGTTCCCTCGGCGTCCCTCTT
GGAGACGACGACTTCGTTGCCATCGTGGCGGCCGCGGACCCAGATCGTCG
TGGAGAGGTATCCTACGTGGACTTTTACAAGTCGATGTGGCCTCATCAGC
TCCGCGATGACCATGGTGTAACCACGGAGATGCGGCCAACCTCCACGCCT
CCGTCTCTCTCGAGTCAGTCTTTCGACCAAGACATGTCGAGCGACAATCT
CGTCAGCGCTAGAAACATAGAGAAAGCGGTACAGAGCGAAAACACACGCC
AAATAACCATGGATTTGGCACCCCCTGCCGATATGAATCTCGACGGGGGT
ATTTTCCACCGCAACCCTGCCACAGACGGTTGTACTAATCCCAACTTCAC
CACAACGATGATTAACTCTTGGGTCATCGGCAAATACCGTTCGAAAAGGC
GACAGCCACCGACTCGGGCACGATCGTCTCCGCACACGCTTCCGGGTAGT
CTCGTGAAGAATGGTCCCTTCGGCGTGGAAGGGCGCTCACCCCAGCGATG
GAGCGAGACCTCCGAAGAGGCAGAGGTGACGTTCCGTCGCCGCCTTGGGA
TGAAAATGAGGTGCGAACGCTGGGGAATTTAAAACCAGCCGATATTAGGC
ATGTATTTCGATAGACCACCTAAGCTTTGTTCACTTGGTCGTCAAACTTT
TATACATCCCCTCCCGAGTATTCTTCCGCGCAATGTTTCCGTTTAGAAAT
CCGATGTCAAGAGTTGAACTCGGTAGAAGAAGAACTCTCCGAGTTCTGGT
TACGTCTGACCCTTAAGAACCTTCGCCACGTCGCGTTATCGTACTGAAGG
CGACCTCACTCTTACTCCTCTGCGCCAAGTTTTGCCAAACGTCACGAGTC
TTGCGGCGGTTGGGACAGCATCGGCATCTTATCTCCTCGTCAAGCGCCTG
TCGATTACGCTGTAGATGGCTACGGCCACGGTAACCTACGTGGGCGCGCC
TACACGCCAAAGAACAACGATCTTGGCTTCGGTTCAGAGCGCATGCGATC
AGATTCAATGCGAGGCCATCGCTATGAAAGTCTCCACAGCTGGCGACGAA
GCCGATCACTGAGTCTTGATGCTAATATGCGCTACGGTCACAGAGCCCGA
TCAACCGTTCAGCACCTCCTCCGAGATGACAGCTGGCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5872:1323..5761+

>mRNA_H-elongata_contig5872.13366.1 ID=mRNA_H-elongata_contig5872.13366.1|Name=mRNA_H-elongata_contig5872.13366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6252bp|location=Sequence derived from alignment at H-elongata_contig5872:1323..5761+ (Himanthalia elongata Himel1 dioecious)
GCTTCACCTCCGGCGCCTCCGCAACGAGCACTAGAGCTCGTCAAAGAGGA
AGTAAACCGAGCTCTGAAAGCTTTCTCGACCCGTCCGCTAAAGGGATTTA
CCTGTTCTCCGCGACCATCAGACTTGCTTCGGCCTTTCGACGTTTGCAAG
GACGCCAGAGTGACGTATCCAGAGTTCTACGCCGGTTTGCGGGGACTCGG
AGTCGGGCTCACAGCGGACGAGTCTGAATCGCTCGCGCGCGAGGTGGACA
ACGATGACACCGGCCTCGTAGACCGTAAAATGTTTGAAACCGCGGCAGTC
GAGAGATGGGGGCGAGATTCAACAACCAGGGAACTCACGTCAGATCCAGG
CTTCACCTCCGGCGCCTCCGCAACGAGCACTAGAGCTCGTCAAAGAGGAA
GTAAACCGAGCTCTGAAAGCTTTCTCGACCCGTCCGCTAAAGGGATTTAC
CTGTTCTCCGCGACCATCAGACTTGCTTCGGCCTTTCGACGTTTGCAAGG
ACGCCAGAGTGACGTATCCAGAGTTCTACGCCGGTTTGCGGGGACTCGGA
GTCGGGCTCACAGCGGACGAGTCTGAATCGCTCGCGCGCGAGGTGGACAA
CGATGACACCGGCCTCGTAGACCGTAAAATGTTTGAAACCGCGGCAGTCG
AGAGATGGGGGCGAGATTCAACAACCAGGGAACTCACGTCAGATCCAGAT
AGATCACGCGGCGTCGTTACTCGCTCCGCCACTCCCGGTGGAGAAATCAA
TCCTCCCCACTGCACTGGAAAATATAATTCGCGAGGAAACAACCACGACA
GAGGAGCGGGAGTTTTCCCCGGCAAGAAGAGAACGACAGAGAGTATTTTT
TCGCAAGATCAATATCTTCCTCCACCTTCTTTCGAAACCGGGGGCTCTGC
CACCAAGACTCCCAGGGTAAGGGGTGGATCGTGCAGTCCGACAGTGTCAT
TCAACCAGTGGCGCCGAATGACGAGAAGGTGGGGTAGTGTCGATGAGACG
AGGCCTTCTGCTGTTGCAGGCGCCCGTGGTAATGGCCACATAGTGCGTCG
TTCACTGGCGGACGAGACAAGCTGGAATGCCGATAGAAATGGGCGCGCAT
CGCAGAGAGGCTGTAACTTGGTTAGCACGTTGCGTTCCTTGCTTGTACGA
GACGATTTCAGTGACGAGGCGATCCGTCGTAGCCTACAACAGGCCCCCGG
TCGTCGAGGCTGGGGACGTCATATTCACGGATTGCAAAGGCAGAAAAATG
ATGCGCACGCAGCTTCAAGCGGGGCCGGGAAAAGCAAAGAAGCACGAGGC
GGCGCAGATCGACGAAATACACCCTCCCGTGGAGAGCCCCATTCGGCAAA
TCCGTCGTCAGTGTCAGCTAACGTGAAGAATATTAGAGGCCGAGGGGAAG
AGAATGCATCGACAGATGAAGGCGCATCGAAGCCGGCCTCGGCACTCGAC
CTATCACGGGCCTACGCGTCTCGGGCCGAGAAAACTTTAATGCTTCGGTC
GAGGGGGGATCTGGTGGGGCTGAGAAGAGCATTTTCGAGAGCAGATTTGT
CCGCGTCGGGAGTACTCTCATCGATGGAAATGGAGCGCTCAATCCTTCGA
CGATTTGGAGCTGGCCTCGGTGATAGAGAGGCGCGGGCGCTTGCTGCGCA
ATACCGCGTAGATTACCGTGGGCACAATATGGTGGACTATGTCCATCTGC
TCGATAATCTTGAAGCCAGGGAAGCGGGACTCACTGGAGAGGAGGTGGAG
TGGGAACGACCGCGACGAGATAAGGTCAAATCACATGACGCTGGAACTAT
GGACATCACCATGCCGGAAGCAGCGGGATTCAGACCACGTACCGGCCACA
GGAGATACAGCAAAAAAAATCATGACGCCACCGAAAGTGTGTTGGTTGGT
GACGTCCCTCTGGAAAAGAGTCAGCTAGTGCGACGGGCCCGAAACAAGAC
CCTTGCACTGCTAGATCAACACGGCACTCGGAGCATTGACCGTGTTTTTG
GATTCATCGATAACGATAGATCACGCGGCGTCGTTACTCGCTCCGCCACT
CCCGGTGGAGAAATCAATCCTCCCCACTGCACTGGAAAATATAATTCGCG
AGGAAACAACCACGACAGAGGAGCGGGAGTTTTCCCCGGCAAGAAGAGAA
CGACAGAGAGTATTTTTTCGCAAGATCAATATCTTCCTCCACCTTCTTTC
GAAACCGGGGGCTCTGCCACCAAGACTCCCAGGGTAAGGGGTGGATCGTG
CAGTCCGACAGTGTCATTCAACCAGTGGCGCCGAATGACGAGAAGGTGGG
GTAGTGTCGATGAGACGAGGCCTTCTGCTGTTGCAGGCGCCCGTGGTAAT
GGCCACATAGTGCGTCGTTCACTGGCGGACGAGACAAGCTGGAATGCCGA
TAGAAATGGGCGCGCATCGCAGAGAGGCTGTAACTTGGTTAGCACGTTGC
GTTCCTTGCTTGTACGAGACGATTTCAGTGACGAGGCGATCCGTCGTAGC
CTACAACAGGCCCCCGGTCGTCGAGGCTGGGGACGTCATATTCACGGATT
GCAAAGGCAGAAAAATGATGCGCACGCAGCTTCAAGCGGGGCCGGGAAAA
GCAAAGAAGCACGAGGCGGCGCAGATCGACGAAATACACCCTCCCGTGGA
GAGCCCCATTCGGCAAATCCGTCGTCAGTGTCAGCTAACGTGAAGAATAT
TAGAGGCCGAGGGGAAGAGAATGCATCGACAGATGAAGGCGCATCGAAGC
CGGCCTCGGCACTCGACCTATCACGGGCCTACGCGTCTCGGGCCGAGAAA
ACTTTAATGCTTCGGTCGAGGGGGGATCTGGTGGGGCTGAGAAGAGCATT
TTCGAGAGCAGATTTGTCCGCGTCGGGAGTACTCTCATCGATGGAAATGG
AGCGCTCAATCCTTCGACGATTTGGAGCTGGCCTCGGTGATAGAGAGGCG
CGGGCGCTTGCTGCGCAATACCGCGTAGATTACCGTGGGCACAATATGGT
GGACTATGTCCATCTGCTCGATAATCTTGAAGCCAGGGAAGCGGGACTCA
CTGGAGAGGAGGTGGAGTGGGAACGACCGCGACGAGATAAGGTCAAATCA
CATGACGCTGGAACTATGGACATCACCATGCCGGAAGCAGCGGGATTCAG
ACCACGTACCGGCCACAGGAGATACAGCAAAAAAAATCATGACGCCACCG
AAAGTGTGTTGGTTGGTGACGTCCCTCTGGAAAAGAGTCAGCTAGTGCGA
CGGGCCCGAAACAAGACCCTTGCACTGCTAGATCAACACGGCACTCGGAG
CATTGACCGTGTTTTTGGATTCATCGATAACGCCCGCACGGGGATCGTCA
ACGCCGAGGAGTTCCGGGATGGTCTCAGGGTCCTCAGTGGGACAGATCCC
CTGTCCGACATTGAATACAAGGTGCTCTTCAGAGATGTCTGCACGGATAA
GGGGCGCATCAAGTATAGGCCCGCACGGGGATCGTCAACGCCGAGGAGTT
CCGGGATGGTCTCAGGGTCCTCAGTGGGACAGATCCCCTGTCCGACATTG
AATACAAGGTGCTCTTCAGAGATGTCTGCACGGATAAGGGGCGCATCAAG
TATAGGGATCTAACCCAAACCTTGAGGGCTGCAAAGGCCAAGGAGAGCTG
GGAAAGCACGCAGCGTAAGATGGCTCGTCAAGCAGAGCTTCCATCGGGCG
GTCGCGGCTCGGGCATCCACCTCCGCCACAGCAAAATCCTGGACTATATA
CCCGAGAACGACGAAGTCTCCGTGGTACCCGGTTTATCGGGAGGTAGGAG
GCACATGGAGTGGCGACGGCGTGCGCTCGTACTACAAAGATTGCGAGACC
GCGTGAAAAAGATCCAAGGTGATCGCAATGGCGCCGGGCCGGATCTAACC
CAAACCTTGAGGGCTGCAAAGGCCAAGGAGAGCTGGGAAAGCACGCAGCG
TAAGATGGCTCGTCAAGCAGAGCTTCCATCGGGCGGTCGCGGCTCGGGCA
TCCACCTCCGCCACAGCAAAATCCTGGACTATATACCCGAGAACGACGAA
GTCTCCGTGGTACCCGGTTTATCGGGAGGTAGGAGGCACATGGAGTGGCG
ACGGCGTGCGCTCGTACTACAAAGATTGCGAGACCGCGTGAAAAAGATCC
AAGGTGATCGCAATGGCGCCGGGCCGTTGTACGAGATGTTCCAAAGACAA
GGCGGGGCCGGAAAGCGCGATACGGCCGAGATGAAGCAGAGCGTCGCCTG
TAAATCTCCTTCTCTGCATCCGCTAGCATTGCGACGAGGGCTAAGTTCCC
TCGGCGTCCCTCTTGGAGACGACGACTTCGTTGCCATCGTGGCGGCCGCG
GACCCAGATCGTCGTGGAGAGGTATCCTACGTGGACTTTTACAAGTCGAT
GTGGCCTCATCAGCTCCGCGATGACCATGGTGTAACCACGGAGATGCGGC
CAACCTCCACGCCTCCGTCTCTCTCGAGTCAGTCTTTCGACCAAGACATG
TCGAGCGACAATCTCGTCAGCGCTAGAAACATAGAGAAAGCGGTACAGAG
CGAAAACACACGCCAAATAACCATGGATTTGGCACCCCCTGCCGATATGA
ATCTCGACGGGGGTATTTTCCACCGCAACCCTGCCACAGACGGTTGTACT
AATCCCAACTTCACCACAACGATGATTAACTCTTGGGTCATCGGCAAATA
CCGTTCGAAAAGGCGACAGCCACCGACTCGGGCACGATCGTCTCCGCACA
CGCTTCCGGGTAGTCTCGTGAAGAATGGTCCCTTCGGCGTGGAAGGGCGC
TCACCCCAGCGATGGAGCGAGACCTCCGAAGAGGCAGAGGTGACGTTCCG
TCGCCGCCTTGGGATGAAAATGAGTTGTACGAGATGTTCCAAAGACAAGG
CGGGGCCGGAAAGCGCGATACGGCCGAGATGAAGCAGAGCGTCGCCTGTA
AATCTCCTTCTCTGCATCCGCTAGCATTGCGACGAGGGCTAAGTTCCCTC
GGCGTCCCTCTTGGAGACGACGACTTCGTTGCCATCGTGGCGGCCGCGGA
CCCAGATCGTCGTGGAGAGGTATCCTACGTGGACTTTTACAAGTCGATGT
GGCCTCATCAGCTCCGCGATGACCATGGTGTAACCACGGAGATGCGGCCA
ACCTCCACGCCTCCGTCTCTCTCGAGTCAGTCTTTCGACCAAGACATGTC
GAGCGACAATCTCGTCAGCGCTAGAAACATAGAGAAAGCGGTACAGAGCG
AAAACACACGCCAAATAACCATGGATTTGGCACCCCCTGCCGATATGAAT
CTCGACGGGGGTATTTTCCACCGCAACCCTGCCACAGACGGTTGTACTAA
TCCCAACTTCACCACAACGATGATTAACTCTTGGGTCATCGGCAAATACC
GTTCGAAAAGGCGACAGCCACCGACTCGGGCACGATCGTCTCCGCACACG
CTTCCGGGTAGTCTCGTGAAGAATGGTCCCTTCGGCGTGGAAGGGCGCTC
ACCCCAGCGATGGAGCGAGACCTCCGAAGAGGCAGAGGTGACGTTCCGTC
GCCGCCTTGGGATGAAAATGAGGCGACCTCACTCTTACTCCTCTGCGCCA
AGTTTTGCCAAACGTCACGAGTCTTGCGGCGGTTGGGACAGCATCGGCAT
CTTATCTCCTCGTCAAGCGCCTGTCGATTACGCTGTAGATGGCTACGGCC
ACGGTAACCTACGTGGGCGCGCCTACACGCCAAAGAACAACGATCTTGGC
TTCGGTTCAGAGCGCATGCGATCAGATTCAATGCGAGGCCATCGCTATGA
AAGTCTCCACAGCTGGCGACGAAGCCGATCACTGAGTCTTGATGCTAATA
TGCGCTACGGTCACAGAGCCCGATCAACCGTTCAGCACCTCCTCCGAGAT
GACAGCTGGCTCGCGACCTCACTCTTACTCCTCTGCGCCAAGTTTTGCCA
AACGTCACGAGTCTTGCGGCGGTTGGGACAGCATCGGCATCTTATCTCCT
CGTCAAGCGCCTGTCGATTACGCTGTAGATGGCTACGGCCACGGTAACCT
ACGTGGGCGCGCCTACACGCCAAAGAACAACGATCTTGGCTTCGGTTCAG
AGCGCATGCGATCAGATTCAATGCGAGGCCATCGCTATGAAAGTCTCCAC
AGCTGGCGACGAAGCCGATCACTGAGTCTTGATGCTAATATGCGCTACGG
TCACAGAGCCCGATCAACCGTTCAGCACCTCCTCCGAGATGACAGCTGGC
TC
back to top