mRNA_H-elongata_contig58715.13365.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: W4FWJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWJ6_9STRA) HSP 1 Score: 156 bits (394), Expect = 7.080e-43 Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 3
Query: 252 VRSRAEILPSM--PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
+RSR +LP P R Q K I KVMFL+AV RP WD + F+G IG W F + A S+ NRPAGTME+ V ++ YK+ML+D VIP IK +WPA ++T+ +QQDN H +D +++ AC SDG+ MKL QPPNSPD NVLDLG F
Sbjct: 17 IRSRFYLLPGEEPPHRSTQSKRFITKVMFLSAVARPLWDNAKSEWFDGKIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVYKKMLIDNVIPAIKALWPADCSKTVFIQQDNARLHVPPSDADIIKACTSDGWAMKLKYQPPNSPDMNVLDLGFF 174
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6G0WCP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCP7_9STRA) HSP 1 Score: 152 bits (383), Expect = 8.960e-40 Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P R + K HI KVMF+AAV RP+WD + +G IG+WPF + A S+ NRPAGT+E+ + +KE YK ML+ +VI IKE WP GS R + +QQDN H A D ++ AAC +NM + NQPPNSPD NVLDLG F
Sbjct: 165 PHRTERSKQHITKVMFMAAVARPRWDEATRTWLDGKIGVWPFVIEVPAARSSRNRPAGTLELQTIPVNKETYKDMLLTKVITAIKEKWPLGSTRNVVIQQDNATPHVAAFDDDVSAACTDGEWNMIVRNQPPNSPDMNVLDLGFF 309
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: W4G370_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G370_9STRA) HSP 1 Score: 148 bits (373), Expect = 3.620e-39 Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 3
Query: 294 RVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
RVQ K H++KVMFL AV P+WD T+ F+G +G W F E AQ + R AGT + V ++E YK MLVD+VIP I+ WP G + + +QQDN H +D ++VAAC++DG++M+++ QPPNSPD NVLDLG F
Sbjct: 151 RVQKKHHLLKVMFLTAVAHPRWDETSGKWFDGKLGTWHFTEIVPAQRRSGRRDAGTPVMTTVSVTRETYKAMLVDKVIPAIRAKWPGGETKAVKIQQDNARPHVPPSDVDVVAACKADGWDMEVVFQPPNSPDLNVLDLGFF 292
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6A5A9T1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A9T1_9STRA) HSP 1 Score: 150 bits (378), Expect = 5.560e-39 Identity = 74/145 (51.03%), Postives = 92/145 (63.45%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P R + K I KVMFL+AV RP+WD N F+G IG W F K A + NRPAGTM+ V +++ YK ML+D VIP IK+ WP+G R + +QQDN H TD ++AAC DG+ M+L QPPNSPD NVLDLG F
Sbjct: 179 PHRTCKSKHFINKVMFLSAVARPRWDPVKNEWFDGKIGTWHFTTKVPAVRGSRNRPAGTMQTTTVNVTRDVYKAMLIDNVIPAIKDKWPSGGTRCVIIQQDNARPHVPPTDHAIMAACTKDGWAMELRFQPPNSPDMNVLDLGFF 323
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: UPI00052FE89A (uncharacterized protein LOC100821796 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FE89A) HSP 1 Score: 146 bits (369), Expect = 1.370e-38 Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEI-IYVEDSKECYKRMLVDQVIPKIKEVWPAGSN-RTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P+R Q K I KVMFLAAV RP++DA N F+G IGI+PF ++ A+ S++NRP GTME + +KE + LV++V+P IKE WP R I +QQDN +H DPE VAA SDGF+++L QPPNSPD N+LDLGLF
Sbjct: 119 PLRTTQSKHFIEKVMFLAAVARPRFDAEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHISVHDPEFVAAATSDGFDIQLTCQPPNSPDTNILDLGLF 265
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: W4FGU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGU6_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.560e-38 Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P R Q K I KVMFL+AV RP+WD + F+G IG W F + A S+ NRPAGTME+ V ++ +K+ML+D VIP IK +WPA ++T+ +QQDN H +D ++V AC SDG+ MKL QPPNSPD N+LDLG F
Sbjct: 135 PHRSTQSKRFITKVMFLSAVARPRWDNAKSEWFDGKIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVHKKMLIDNVIPAIKALWPADCSKTVFIQQDNARPHVPPSDADIVKACTSDGWAMKLKYQPPNSPDMNILDLGFF 279
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: UPI00052FDC9E (uncharacterized protein LOC100833420 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FDC9E) HSP 1 Score: 144 bits (363), Expect = 4.910e-38 Identity = 75/147 (51.02%), Postives = 98/147 (66.67%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEI-IYVEDSKECYKRMLVDQVIPKIKEVWPAGSN-RTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P+R Q K I KVMFLAAV RP++D N F+G IGI+PF ++ A+ S++NRP GTME + +KE + LV++V+P IKE WP R I +QQDN +H DPE VAA SDG++++L QPPNSPD N+LDLGLF
Sbjct: 107 PLRTTQSKHFIEKVMFLAAVARPRFDVEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHISVHDPEFVAAATSDGYDIRLTCQPPNSPDTNILDLGLF 253
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: UPI000D0E11B9 (uncharacterized protein LOC100837505 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0E11B9) HSP 1 Score: 148 bits (374), Expect = 1.680e-37 Identity = 77/147 (52.38%), Postives = 100/147 (68.03%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEI-IYVEDSKECYKRMLVDQVIPKIKEVWPAGSN-RTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P+R Q K I KVMFLAAV RP++DA N F+G IGI+PF ++ A+ S++NRP GTME + +KE + LV++V+P IKE WP R I +QQDN +H + DPE VAA SDGF+++L QPPNSPD N+LDLGLF
Sbjct: 479 PLRTTQSKHFIEKVMFLAAVARPRFDAEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHILVHDPEFVAAATSDGFDIRLTCQPPNSPDTNILDLGLF 625
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.960e-36 Identity = 70/145 (48.28%), Postives = 93/145 (64.14%), Query Frame = 3
Query: 285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
P R + K I KVMFL+AV RP+ + F+G IG W F EK A ++ NRPAGT+E V ++ YK ML+D+VIP IK WP+ + R + +QQDN H +D +V AC+S G+NMK++ QPPNSPD N+LDLG F
Sbjct: 204 PHRTCKSKRFISKVMFLSAVARPRLNDDTGEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWPSSAGRNVIIQQDNARPHVPPSDSAIVDACKSGGWNMKVVYQPPNSPDLNILDLGFF 348
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.150e-36 Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = 3
Query: 282 MPVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
+P+R+VQHKSH++KVMFLAAV RP++D++ + QF+G IGI+PF +R AQ + N AGTM VE ++ YK+ L + V P I+ +P S+ I QQ+N P H DP++VAA ++L+NQPPNSPDCN+LDLG F
Sbjct: 82 LPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYKK-LNNNVFPDIRAKFP--SSPIIFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFF 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58715.13365.1 >prot_H-elongata_contig58715.13365.1 ID=prot_H-elongata_contig58715.13365.1|Name=mRNA_H-elongata_contig58715.13365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp MPVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQback to top mRNA from alignment at H-elongata_contig58715:1274..2005+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58715.13365.1 ID=mRNA_H-elongata_contig58715.13365.1|Name=mRNA_H-elongata_contig58715.13365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig58715:1274..2005+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58715:1274..2005+ >mRNA_H-elongata_contig58715.13365.1 ID=mRNA_H-elongata_contig58715.13365.1|Name=mRNA_H-elongata_contig58715.13365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig58715:1274..2005+ (Himanthalia elongata Himel1 dioecious)back to top |