mRNA_H-elongata_contig58715.13365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58715.13365.1
Unique NamemRNA_H-elongata_contig58715.13365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: W4FWJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWJ6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 7.080e-43
Identity = 80/158 (50.63%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  252 VRSRAEILPSM--PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            +RSR  +LP    P R  Q K  I KVMFL+AV RP WD   +  F+G IG W F +   A  S+ NRPAGTME+  V  ++  YK+ML+D VIP IK +WPA  ++T+ +QQDN   H   +D +++ AC SDG+ MKL  QPPNSPD NVLDLG F
Sbjct:   17 IRSRFYLLPGEEPPHRSTQSKRFITKVMFLSAVARPLWDNAKSEWFDGKIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVYKKMLIDNVIPAIKALWPADCSKTVFIQQDNARLHVPPSDADIIKACTSDGWAMKLKYQPPNSPDMNVLDLGFF 174          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6G0WCP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCP7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 8.960e-40
Identity = 74/145 (51.03%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P R  + K HI KVMF+AAV RP+WD    +  +G IG+WPF  +  A  S+ NRPAGT+E+  +  +KE YK ML+ +VI  IKE WP GS R + +QQDN   H  A D ++ AAC    +NM + NQPPNSPD NVLDLG F
Sbjct:  165 PHRTERSKQHITKVMFMAAVARPRWDEATRTWLDGKIGVWPFVIEVPAARSSRNRPAGTLELQTIPVNKETYKDMLLTKVITAIKEKWPLGSTRNVVIQQDNATPHVAAFDDDVSAACTDGEWNMIVRNQPPNSPDMNVLDLGFF 309          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: W4G370_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G370_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.620e-39
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 3
Query:  294 RVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            RVQ K H++KVMFL AV  P+WD T+   F+G +G W F E   AQ  +  R AGT  +  V  ++E YK MLVD+VIP I+  WP G  + + +QQDN   H   +D ++VAAC++DG++M+++ QPPNSPD NVLDLG F
Sbjct:  151 RVQKKHHLLKVMFLTAVAHPRWDETSGKWFDGKLGTWHFTEIVPAQRRSGRRDAGTPVMTTVSVTRETYKAMLVDKVIPAIRAKWPGGETKAVKIQQDNARPHVPPSDVDVVAACKADGWDMEVVFQPPNSPDLNVLDLGFF 292          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6A5A9T1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A9T1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.560e-39
Identity = 74/145 (51.03%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P R  + K  I KVMFL+AV RP+WD   N  F+G IG W F  K  A   + NRPAGTM+   V  +++ YK ML+D VIP IK+ WP+G  R + +QQDN   H   TD  ++AAC  DG+ M+L  QPPNSPD NVLDLG F
Sbjct:  179 PHRTCKSKHFINKVMFLSAVARPRWDPVKNEWFDGKIGTWHFTTKVPAVRGSRNRPAGTMQTTTVNVTRDVYKAMLIDNVIPAIKDKWPSGGTRCVIIQQDNARPHVPPTDHAIMAACTKDGWAMELRFQPPNSPDMNVLDLGFF 323          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: UPI00052FE89A (uncharacterized protein LOC100821796 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FE89A)

HSP 1 Score: 146 bits (369), Expect = 1.370e-38
Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEI-IYVEDSKECYKRMLVDQVIPKIKEVWPAGSN-RTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P+R  Q K  I KVMFLAAV RP++DA  N  F+G IGI+PF  ++ A+ S++NRP GTME  +    +KE  +  LV++V+P IKE WP     R I +QQDN  +H    DPE VAA  SDGF+++L  QPPNSPD N+LDLGLF
Sbjct:  119 PLRTTQSKHFIEKVMFLAAVARPRFDAEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHISVHDPEFVAAATSDGFDIQLTCQPPNSPDTNILDLGLF 265          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: W4FGU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGU6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.560e-38
Identity = 74/145 (51.03%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P R  Q K  I KVMFL+AV RP+WD   +  F+G IG W F +   A  S+ NRPAGTME+  V  ++  +K+ML+D VIP IK +WPA  ++T+ +QQDN   H   +D ++V AC SDG+ MKL  QPPNSPD N+LDLG F
Sbjct:  135 PHRSTQSKRFITKVMFLSAVARPRWDNAKSEWFDGKIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVHKKMLIDNVIPAIKALWPADCSKTVFIQQDNARPHVPPSDADIVKACTSDGWAMKLKYQPPNSPDMNILDLGFF 279          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: UPI00052FDC9E (uncharacterized protein LOC100833420 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FDC9E)

HSP 1 Score: 144 bits (363), Expect = 4.910e-38
Identity = 75/147 (51.02%), Postives = 98/147 (66.67%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEI-IYVEDSKECYKRMLVDQVIPKIKEVWPAGSN-RTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P+R  Q K  I KVMFLAAV RP++D   N  F+G IGI+PF  ++ A+ S++NRP GTME  +    +KE  +  LV++V+P IKE WP     R I +QQDN  +H    DPE VAA  SDG++++L  QPPNSPD N+LDLGLF
Sbjct:  107 PLRTTQSKHFIEKVMFLAAVARPRFDVEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHISVHDPEFVAAATSDGYDIRLTCQPPNSPDTNILDLGLF 253          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: UPI000D0E11B9 (uncharacterized protein LOC100837505 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0E11B9)

HSP 1 Score: 148 bits (374), Expect = 1.680e-37
Identity = 77/147 (52.38%), Postives = 100/147 (68.03%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEI-IYVEDSKECYKRMLVDQVIPKIKEVWPAGSN-RTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P+R  Q K  I KVMFLAAV RP++DA  N  F+G IGI+PF  ++ A+ S++NRP GTME  +    +KE  +  LV++V+P IKE WP     R I +QQDN  +H +  DPE VAA  SDGF+++L  QPPNSPD N+LDLGLF
Sbjct:  479 PLRTTQSKHFIEKVMFLAAVARPRFDAEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHILVHDPEFVAAATSDGFDIRLTCQPPNSPDTNILDLGLF 625          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.960e-36
Identity = 70/145 (48.28%), Postives = 93/145 (64.14%), Query Frame = 3
Query:  285 PVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            P R  + K  I KVMFL+AV RP+ +      F+G IG W F EK  A  ++ NRPAGT+E   V  ++  YK ML+D+VIP IK  WP+ + R + +QQDN   H   +D  +V AC+S G+NMK++ QPPNSPD N+LDLG F
Sbjct:  204 PHRTCKSKRFISKVMFLSAVARPRLNDDTGEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWPSSAGRNVIIQQDNARPHVPPSDSAIVDACKSGGWNMKVVYQPPNSPDLNILDLGFF 348          
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.150e-36
Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = 3
Query:  282 MPVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQHSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQQDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF 719
            +P+R+VQHKSH++KVMFLAAV RP++D++ + QF+G IGI+PF  +R AQ +  N  AGTM    VE ++  YK+ L + V P I+  +P  S+  I  QQ+N P H    DP++VAA       ++L+NQPPNSPDCN+LDLG F
Sbjct:   82 LPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYKK-LNNNVFPDIRAKFP--SSPIIFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFF 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58715.13365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4FWJ6_9STRA7.080e-4350.63Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0WCP7_9STRA8.960e-4051.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4G370_9STRA3.620e-3949.30Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5A9T1_9STRA5.560e-3951.03Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI00052FE89A1.370e-3852.38uncharacterized protein LOC100821796 n=1 Tax=Brach... [more]
W4FGU6_9STRA1.560e-3851.03Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
UPI00052FDC9E4.910e-3851.02uncharacterized protein LOC100833420 n=1 Tax=Brach... [more]
UPI000D0E11B91.680e-3752.38uncharacterized protein LOC100837505 n=1 Tax=Brach... [more]
A0A6A4YXI9_9STRA1.960e-3648.28Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6H5KWV2_9PHAE2.150e-3649.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58715contigH-elongata_contig58715:1274..2005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog4792.ETI53387
EggNOG OGs2CMKC@1,2QQNW@2759,3QGXT@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size719
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58715.13365.1prot_H-elongata_contig58715.13365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58715 1568..2005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.8887024-UTR-H-elongata_contig58715:1273..15511622930951.8887024-UTR-H-elongata_contig58715:1273..1551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58715 1274..1551 +
1691679638.043009-UTR-H-elongata_contig58715:1273..15511691679638.043009-UTR-H-elongata_contig58715:1273..1551Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58715 1274..1551 +
1622930951.906919-UTR-H-elongata_contig58715:1564..15671622930951.906919-UTR-H-elongata_contig58715:1564..1567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58715 1565..1567 +
1691679638.0568876-UTR-H-elongata_contig58715:1564..15671691679638.0568876-UTR-H-elongata_contig58715:1564..1567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58715 1565..1567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.9245565-CDS-H-elongata_contig58715:1567..20051622930951.9245565-CDS-H-elongata_contig58715:1567..2005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58715 1568..2005 +
1691679638.0667286-CDS-H-elongata_contig58715:1567..20051691679638.0667286-CDS-H-elongata_contig58715:1567..2005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58715 1568..2005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58715.13365.1

>prot_H-elongata_contig58715.13365.1 ID=prot_H-elongata_contig58715.13365.1|Name=mRNA_H-elongata_contig58715.13365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MPVRRVQHKSHIVKVMFLAAVTRPQWDATANSQFNGLIGIWPFAEKRIAQ
HSTINRPAGTMEIIYVEDSKECYKRMLVDQVIPKIKEVWPAGSNRTICVQ
QDNPPSHHIATDPELVAACQSDGFNMKLINQPPNSPDCNVLDLGLF
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mRNA from alignment at H-elongata_contig58715:1274..2005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58715.13365.1 ID=mRNA_H-elongata_contig58715.13365.1|Name=mRNA_H-elongata_contig58715.13365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig58715:1274..2005+ (Himanthalia elongata Himel1 dioecious)
CCAGATCAAGAACCGCACGACACAGCGGGGCTCGCGGCTGCATTGGTCAT TCCGCAGTCTACGCTGTCAAGGAACCTGAAGGCGGTCGGCCTCAAAGCTT GCCGACAGTACTTGAAGCCGTTTCTTACTGACAAAGGCAAGCGGAAGCGA GTGGACTGGGCGTTGCGCTTCGTCCGTGAGATGCCTGGGGGTAGGTACAA GTTCAACTCCCTGACCGACATGGTGTGCGTAGACGAGAAGTGGTTCTATC TGTGCGCTCACGGGCAGAAATACTACCTGTACGATAGATAGTCCATGCCC GTCCGCCGGGTACAGCACAAATCCCATATCGTCAAGGTGATGTTCCTTGC TGCTGTCACTCGTCCTCAGTGGGATGCCACCGCCAACAGTCAGTTCAACG GTCTGATCGGTATCTGGCCGTTCGCGGAGAAGCGCATTGCTCAGCACAGC ACCATCAACAGGCCGGCGGGCACCATGGAAATAATCTACGTGGAGGACAG CAAAGAATGCTACAAGCGGATGCTTGTGGACCAAGTGATCCCCAAGATCA AGGAGGTGTGGCCTGCAGGGTCAAACCGAACTATTTGTGTCCAGCAGGAC AACCCCCCGTCTCACCACATCGCCACGGATCCGGAGCTTGTGGCGGCATG CCAGTCAGACGGTTTCAACATGAAGCTCATCAACCAGCCACCCAACAGCC CCGACTGCAACGTCCTCGATCTCGGATTGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig58715:1274..2005+

>mRNA_H-elongata_contig58715.13365.1 ID=mRNA_H-elongata_contig58715.13365.1|Name=mRNA_H-elongata_contig58715.13365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig58715:1274..2005+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGTCCGCCGGGTACAGCACAAATCCCATATCGTCAAGGTGATGTT
CCTTGCTGCTGTCACTCGTCCTCAGTGGGATGCCACCGCCAACAGTCAGT
TCAACGGTCTGATCGGTATCTGGCCGTTCGCGGAGAAGCGCATTGCTCAG
CACAGCACCATCAACAGGCCGGCGGGCACCATGGAAATAATCTACGTGGA
GGACAGCAAAGAATGCTACAAGCGGATGCTTGTGGACCAAGTGATCCCCA
AGATCAAGGAGGTGTGGCCTGCAGGGTCAAACCGAACTATTTGTGTCCAG
CAGGACAACCCCCCGTCTCACCACATCGCCACGGATCCGGAGCTTGTGGC
GGCATGCCAGTCAGACGGTTTCAACATGAAGCTCATCAACCAGCCACCCA
ACAGCCCCGACTGCAACGTCCTCGATCTCGGATTGTTTATGCCCGTCCGC
CGGGTACAGCACAAATCCCATATCGTCAAGGTGATGTTCCTTGCTGCTGT
CACTCGTCCTCAGTGGGATGCCACCGCCAACAGTCAGTTCAACGGTCTGA
TCGGTATCTGGCCGTTCGCGGAGAAGCGCATTGCTCAGCACAGCACCATC
AACAGGCCGGCGGGCACCATGGAAATAATCTACGTGGAGGACAGCAAAGA
ATGCTACAAGCGGATGCTTGTGGACCAAGTGATCCCCAAGATCAAGGAGG
TGTGGCCTGCAGGGTCAAACCGAACTATTTGTGTCCAGCAGGACAACCCC
CCGTCTCACCACATCGCCACGGATCCGGAGCTTGTGGCGGCATGCCAGTC
AGACGGTTTCAACATGAAGCTCATCAACCAGCCACCCAACAGCCCCGACT
GCAACGTCCTCGATCTCGGATTGTTT
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