mRNA_H-elongata_contig58692.13360.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58692.13360.1
Unique NamemRNA_H-elongata_contig58692.13360.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58692.13360.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 8.540e-36
Identity = 83/136 (61.03%), Postives = 94/136 (69.12%), Query Frame = 3 
Query:    3 GVEFSPKG-LMAVAIVDGTVLLTRVERYTSGLRSYHKLHISDSMVHRFDSHKLEASLADE---------NVAEGATRGA-TDSKDARPPPQTPTLGRERSMSSLWGVEVHHLYCLSLSPWLGPG---GPRDEALGP 368
            GVEFS KG LMAVA+ DGTVLL RVERYTSG+R+ HKL IS+SM+HR DSH+LE  LADE         +V+EG  +G  T   DAR    T T  RE +MSSLWGVEVHHL CLSL PWLGPG   G  +  LGP
Sbjct:  412 GVEFSAKGGLMAVALADGTVLLARVERYTSGVRARHKLQISNSMLHRSDSHRLEDYLADETLRAEQGLGDVSEGDGKGGVTSPPDAR----TRTFSREGTMSSLWGVEVHHLNCLSLDPWLGPGDGGGGGESLLGP 543
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BLAST of mRNA_H-elongata_contig58692.13360.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.120e-11
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 3 
Query:   12 FSPKG-LMAVAIVDGTVLLTRVERYTSGLRSYHKLHISDSMVHRFDSHKL------------EASLADENVAEGATR-GATDSKDARPP-----PQTPTLGRERSMSSLWGVEVHHLYCLSLSPWLGPGG 344
            FS KG L+AVA+ DG+VLL+RVER+TSG R+   L +   + +R +S +L            E + A  ++A GA   G + S  +  P     P TP   ++R +++L GVE+H L+ LSL P+L  GG
Sbjct:  162 FSGKGGLLAVALGDGSVLLSRVERFTSGARAGDGLRVMSGLENRRNSFRLDPAERLDPADAAELAAATLDIAGGAEGLGGSGSFQSDVPGGGHAPDTPRSAQQRGIATLAGVEIHQLHSLSLGPYLAAGG 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58692.13360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB77_ECTSI8.540e-3661.03SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA2.120e-1138.46RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58692contigH-elongata_contig58692:2283..3545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.8e-28
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size370
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58692.13360.1prot_H-elongata_contig58692.13360.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58692 2312..3545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.3538241-UTR-H-elongata_contig58692:2282..23111622930951.3538241-UTR-H-elongata_contig58692:2282..2311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58692 2283..2311 +
1691679637.87417-UTR-H-elongata_contig58692:2282..23111691679637.87417-UTR-H-elongata_contig58692:2282..2311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58692 2283..2311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.3754642-CDS-H-elongata_contig58692:2311..23791622930951.3754642-CDS-H-elongata_contig58692:2311..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58692 2312..2379 +
1691679637.8839247-CDS-H-elongata_contig58692:2311..23791691679637.8839247-CDS-H-elongata_contig58692:2311..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58692 2312..2379 +
1622930951.3950784-CDS-H-elongata_contig58692:2651..27761622930951.3950784-CDS-H-elongata_contig58692:2651..2776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58692 2652..2776 +
1691679637.8928506-CDS-H-elongata_contig58692:2651..27761691679637.8928506-CDS-H-elongata_contig58692:2651..2776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58692 2652..2776 +
1622930951.4135623-CDS-H-elongata_contig58692:3399..35451622930951.4135623-CDS-H-elongata_contig58692:3399..3545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58692 3400..3545 +
1691679637.9024968-CDS-H-elongata_contig58692:3399..35451691679637.9024968-CDS-H-elongata_contig58692:3399..3545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58692 3400..3545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58692.13360.1

>prot_H-elongata_contig58692.13360.1 ID=prot_H-elongata_contig58692.13360.1|Name=mRNA_H-elongata_contig58692.13360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MAVAIVDGTVLLTRVERYTSGLRSYHKLHISDSMVHRFDSHKLEASLADE
NVAEGATRGATDSKDARPPPQTPTLGRERSMSSLWGVEVHHLYCLSLSPW
LGPGGPRDEALGP
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mRNA from alignment at H-elongata_contig58692:2283..3545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58692.13360.1 ID=mRNA_H-elongata_contig58692.13360.1|Name=mRNA_H-elongata_contig58692.13360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1263bp|location=Sequence derived from alignment at H-elongata_contig58692:2283..3545+ (Himanthalia elongata Himel1 dioecious)
TGGGCGTAGAGTTTAGCCCGAAGGGTCTCATGGCGGTGGCTATTGTAGAC
GGAACCGTACTGCTGACCAGGGTCGAGCGTTACACGAGCGGTCTTAGGTG
GGTCCTCCCGGGCGCGTTTGACAATCTCACGAAGAAGTTTTTCCAGGGCA
GGACGTTTTCCGTCGATGCTTGACTAGGAGAGAAGAAAAAGGAGTGATCG
GCGCCGAATACCGTTAGGCAGGCCTTTGGGATGGCATACACATTTTGAAC
TGCCAATAATTAATTAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCCCGTTCCCCCCCATCTCGCCTTTTGTGGGATGGCCTGGGC
GTGGTGTCCTTCGCGACAGATCTTACCACAAGCTCCATATATCGGACAGC
ATGGTCCACAGATTTGATAGCCACAAGTTGGAGGCGTCCTTGGCGGACGA
GAATGTCGCGGAAGGCGCCACGAGAGGAGCGACCGACTCGAAAGGTCAGC
GGCCTAGTGTCCCGCGGGGCCACCGCCTCTCGATCGCCAAACAACATTTA
AGCATTGGAGGGGTCGAGGGTTCCCACAGCGCCCGCTCTTGGTGTCCGCG
GTACAGTAGATAGACAAGTTTTCGTCGTGTAGACCGCGGAAAACGAGTCA
TCCGTGTGACGTGGTCGCCCACGAGGCGAGTGACTGCCAACCGCTCGAGC
CTGAGTGCATACGTCAACGTCAGCGTCTAACACTGTTCTTGGGCTATTAA
AACGGCGATTTTTTTTTTTTTCGTGTGAGGCAGCTTCTATTATTAGTATG
CAGCTAAATTGTGTATTTATGGGCATGCCACGGCCACGCGTGTCTCCCGG
GTGCCGGCAAAAACGTTACGGCGGAGAAAGCAAAAAATCAACGAAAATCA
AAGGGGAAAAAAAAACTTGACTGGTCGGGTGCCGCCCTGAAAAGAAAGGT
CATATCATCCTCAAAATATAATTTCGTACGTTTGTGACGAGGGAATACGG
GACGGGTAGGATGTGATGTTCATGGCTTTAGTCCATCTCTCTCTCTCTCT
CTCTCTCTATATATATATATATATATAATTCTGTGCTCGTTTTGTCCCGC
GAATGATCATGCTGCAGATGCGCGGCCGCCGCCACAGACTCCCACGCTCG
GGAGGGAAAGATCGATGTCATCGCTGTGGGGGGTGGAGGTCCACCACCTC
TACTGCCTATCGCTGAGTCCCTGGTTAGGACCGGGAGGCCCGAGGGACGA
GGCGCTTGGCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig58692:2283..3545+

>mRNA_H-elongata_contig58692.13360.1 ID=mRNA_H-elongata_contig58692.13360.1|Name=mRNA_H-elongata_contig58692.13360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig58692:2283..3545+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGCTATTGTAGACGGAACCGTACTGCTGACCAGGGTCGAGCG
TTACACGAGCGGTCTTAGATGGCGGTGGCTATTGTAGACGGAACCGTACT
GCTGACCAGGGTCGAGCGTTACACGAGCGGTCTTAGATCTTACCACAAGC
TCCATATATCGGACAGCATGGTCCACAGATTTGATAGCCACAAGTTGGAG
GCGTCCTTGGCGGACGAGAATGTCGCGGAAGGCGCCACGAGAGGAGCGAC
CGACTCGAAAGATCTTACCACAAGCTCCATATATCGGACAGCATGGTCCA
CAGATTTGATAGCCACAAGTTGGAGGCGTCCTTGGCGGACGAGAATGTCG
CGGAAGGCGCCACGAGAGGAGCGACCGACTCGAAAGATGCGCGGCCGCCG
CCACAGACTCCCACGCTCGGGAGGGAAAGATCGATGTCATCGCTGTGGGG
GGTGGAGGTCCACCACCTCTACTGCCTATCGCTGAGTCCCTGGTTAGGAC
CGGGAGGCCCGAGGGACGAGGCGCTTGGCCCGATGCGCGGCCGCCGCCAC
AGACTCCCACGCTCGGGAGGGAAAGATCGATGTCATCGCTGTGGGGGGTG
GAGGTCCACCACCTCTACTGCCTATCGCTGAGTCCCTGGTTAGGACCGGG
AGGCCCGAGGGACGAGGCGCTTGGCCCG
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