mRNA_H-elongata_contig58676.13356.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58676.13356.1
Unique NamemRNA_H-elongata_contig58676.13356.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58676.13356.1 vs. uniprot
Match: A0A6H5KU01_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU01_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   40 GDLRPAALRAFEALDRNKSGQISRRDFRRALEDMGFN-LGDDEAEEILDHFDPH 198
            G+ +PA LRAFE+ DR+ SG++SRRDFRRAL ++GF+ LGD+EA EILD FDPH
Sbjct:  439 GEGKPATLRAFESFDRDGSGRVSRRDFRRALRELGFDRLGDEEAAEILDRFDPH 492
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BLAST of mRNA_H-elongata_contig58676.13356.1 vs. uniprot
Match: D8LSF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   52 PAALRAFEALDRNKSGQISRRDFRRALEDMGFN-LGDDEAEEILDHFDPH 198
            P  LRAFE+ DR+ SG++SRRDFRRAL ++GF+ LGD+EA EILD FDPH
Sbjct:  411 PGTLRAFESFDRDGSGRVSRRDFRRALRELGFDRLGDEEAAEILDRFDPH 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58676.13356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU01_9PHAE1.150e-1366.67EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LSF6_ECTSI1.410e-1268.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58676contigH-elongata_contig58676:750..953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.975683-CDS-H-elongata_contig58676:749..9531622930950.975683-CDS-H-elongata_contig58676:749..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58676 750..953 -
1691679637.7315116-CDS-H-elongata_contig58676:749..9531691679637.7315116-CDS-H-elongata_contig58676:749..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58676 750..953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58676.13356.1prot_H-elongata_contig58676.13356.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58676 750..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58676.13356.1

>prot_H-elongata_contig58676.13356.1 ID=prot_H-elongata_contig58676.13356.1|Name=mRNA_H-elongata_contig58676.13356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
LVRRNDGSGRSLCGDLRPAALRAFEALDRNKSGQISRRDFRRALEDMGFN
LGDDEAEEILDHFDPHR*
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mRNA from alignment at H-elongata_contig58676:750..953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58676.13356.1 ID=mRNA_H-elongata_contig58676.13356.1|Name=mRNA_H-elongata_contig58676.13356.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig58676:750..953- (Himanthalia elongata Himel1 dioecious)
CTCGTACGCCGAAACGATGGGAGTGGACGCAGCCTTTGTGGTGACCTACG
ACCGGCGGCTCTACGAGCATTCGAAGCACTAGACCGGAACAAAAGTGGTC
AGATATCCAGGCGTGACTTCCGTCGCGCGCTCGAAGACATGGGCTTTAAT
CTAGGAGACGACGAAGCAGAGGAGATTCTAGATCACTTTGATCCTCACCG
GTGA
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Coding sequence (CDS) from alignment at H-elongata_contig58676:750..953-

>mRNA_H-elongata_contig58676.13356.1 ID=mRNA_H-elongata_contig58676.13356.1|Name=mRNA_H-elongata_contig58676.13356.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig58676:750..953- (Himanthalia elongata Himel1 dioecious)
CTCGTACGCCGAAACGATGGGAGTGGACGCAGCCTTTGTGGTGACCTACG
ACCGGCGGCTCTACGAGCATTCGAAGCACTAGACCGGAACAAAAGTGGTC
AGATATCCAGGCGTGACTTCCGTCGCGCGCTCGAAGACATGGGCTTTAAT
CTAGGAGACGACGAAGCAGAGGAGATTCTAGATCACTTTGATCCTCACCG
GTGACTCGTACGCCGAAACGATGGGAGTGGACGCAGCCTTTGTGGTGACC
TACGACCGGCGGCTCTACGAGCATTCGAAGCACTAGACCGGAACAAAAGT
GGTCAGATATCCAGGCGTGACTTCCGTCGCGCGCTCGAAGACATGGGCTT
TAATCTAGGAGACGACGAAGCAGAGGAGATTCTAGATCACTTTGATCCTC
ACCGGTGA
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