mRNA_H-elongata_contig58587.13347.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: A0A834FW95_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FW95_RHOSS) HSP 1 Score: 211 bits (538), Expect = 4.600e-63 Identity = 111/223 (49.78%), Postives = 158/223 (70.85%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTIE-ITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGCKEET 666
KVMFL AVARPR + +FSGKIGI+PFT + A+R+S+NR AGTM TK + +TK+ + L+EKVIP ++S+ + S G + +++QQDNARPH+ ND + EA + +G+DIRL NQPANSPD N+LDLGFFN+IQ LQ++ PR++D+LV AV +++++ P L+ V+LSL A + ++M G N+YKLPH K +L + GVLP+QL C +
Sbjct: 214 KVMFLAAVARPRFGANGCEEFSGKIGIFPFTVKEPAKRTSKNRLAGTMETKAVAAVTKDVIRSYLIEKVIPAIQSKWHQSSVG-----ETIYIQQDNARPHIKPNDVEFHEAATRNGFDIRLTNQPANSPDLNVLDLGFFNAIQSLQHQEAPRTIDQLVNAVEKSFDKLPSRELDSVFLSLQACMVEVMKVNGGNNYKLPHIKKPQLRRDGVLPFQLECGRDV 431
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3) HSP 1 Score: 202 bits (515), Expect = 9.690e-60 Identity = 111/221 (50.23%), Postives = 150/221 (67.87%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTI-EITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGCKE 660
KVMFL AVARPR + S N FSGKIGIYPFT+ A+RSS+NR AGT+ TK I +TKE + L+EKV+PD++++ PR G +++QQDNA+PH+ ND + EA S DG+DIRL QP+NSPD N+LDLGFF +IQ LQ + ++DELV AV A+ + LN V+L+L + +I+ G N+Y++PH K RLE+ G LP ++GC E
Sbjct: 208 KVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPRSHVGP------IFIQQDNAKPHIDVNDNEFLEAASQDGFDIRLNFQPSNSPDLNVLDLGFFRAIQSLQEQEALGTIDELVHAVQTAFEKMQSQQLNNVFLTLQTCMREIIKVQGGNNYQIPHIGKNRLEREGNLPLRIGCDE 422
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI001CB9A663 (uncharacterized protein LOC122597563 n=3 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A663) HSP 1 Score: 202 bits (513), Expect = 1.040e-59 Identity = 109/219 (49.77%), Postives = 148/219 (67.58%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTI-EITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGC 654
KVMFL AVARPR + S N FSGKIGI+PFT A+RSS+NR AGT++TK I +TKE + L+EKV+P ++S+ PR G +++QQDNA+PH+ ND + + S DG+DIRL QP NSPD N+LDLGFF +IQ LQ + + S+DELV+AV ++ R P LN V+L+L +++IM G N+Y+ PH KG+LE+ G LP + C
Sbjct: 180 KVMFLAAVARPRFDASGNEVFSGKIGIFPFTTLEPAKRSSKNRVAGTLITKPILSVTKEVTRSWLIEKVLPAIRSKWPRDHTGP------IFIQQDNAKPHIDVNDAEFNQEASKDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLQEQEVLGSIDELVSAVKTSFERMPSNELNNVFLTLQTCMKEIMKVRGGNNYQTPHIGKGKLERQGKLPLTIEC 392
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1) HSP 1 Score: 199 bits (505), Expect = 4.880e-59 Identity = 109/222 (49.10%), Postives = 148/222 (66.67%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTIE-ITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGCKEE 663
K MFL AVARPR FSGKIGI+PFT A+R+S+NR AGTMVTK E ITKE K L+EKVIP + ++ P+ + + +QQDNA+PH+ N+ + +A S DG+DIRL+ QP NSPD N+LDLGFF SIQ LQ+ P +++ELV AV ++++ P LNRV+L+ +++IM G+NDYK+PH K RLE+ G LP Q+ C+ +
Sbjct: 140 KAMFLAAVARPRNG------FSGKIGIFPFTFIEPAKRNSKNRVAGTMVTKVDESITKEKVKSCLIEKVIPAIHAKWPQ-------GMRTIIIQQDNAKPHIDCNNAEFMQAASKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREGTLPLQIRCESD 348
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI001CB94040 (uncharacterized protein LOC122597462 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94040) HSP 1 Score: 196 bits (499), Expect = 1.100e-58 Identity = 106/219 (48.40%), Postives = 147/219 (67.12%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTI-EITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGC 654
KVMFL AVARPR + S N FSGKIGI+PFT A+R S+NR AGT++TK I +TKE + L+EKV+P ++S+ PR G +++QQ+NA+PH+ ND + + S DG+DIRL QP NSPD N+LDLGFF +IQ L+ + + S+DELV+AV ++ R P LN V+L+L +++IM G N+Y+ PH KG+LE+ G LP + C
Sbjct: 87 KVMFLAAVARPRFDASGNEVFSGKIGIFPFTTLEPAKRLSKNRVAGTLITKPILSVTKEVTRSWLIEKVLPAIRSKWPRDHTGP------IFIQQENAKPHIDVNDAEFNQEASKDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLKKQEVLGSIDELVSAVKTSFERMPSNELNNVFLTLQTCMKEIMKVRGGNNYQTPHIGKGKLERQGKLPLTIEC 299
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: A0A8I6WKB7_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WKB7_HORVV) HSP 1 Score: 194 bits (492), Expect = 3.510e-58 Identity = 101/223 (45.29%), Postives = 148/223 (66.37%), Query Frame = 1
Query: 4 VMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTIEITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGCKEETWA 672
VMFL AVARP+ + N FSGKIGI+PF +++ AQR S NR GTM TK+I++ ++ ++ ++E ++P ++S P AG + ++++QDNA+PH++ NDP+ A+ + G DIRL+ QPANSPD N LDLGFFNS+Q L + PR++ +L+ V E + LNRV+LSL A + +I+ G N YK+PH K RLE G+LP +L C +E +A
Sbjct: 43 VMFLTAVARPKWDSEGNVTFSGKIGIWPFVKEIPAQRKSDNRPRGTMETKSIKVNRQVMREFMIENLLPAIQSSWPDNDAG-----QTIFIKQDNAKPHILPNDPEFLVAVESTGLDIRLIQQPANSPDLNGLDLGFFNSLQSLTDCLSPRTLQDLIKGVLEEFENYEVYKLNRVFLSLQACMIEILNHAGGNGYKIPHVNKERLESLGLLPQRLTCPQEVYA 260
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: A0A1R3KIH7_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KIH7_9ROSI) HSP 1 Score: 198 bits (504), Expect = 4.520e-58 Identity = 102/218 (46.79%), Postives = 149/218 (68.35%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTIEITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGC 654
KVMFL AVARPR + S N FSGKIGI+PF + A+R S+NR AGTM TK + +TK+ + ++EK++P +KS+ P + + V++QQDNA+PH+ D + +A S+DG+DI++ QP NSPD N+LDLGFF +IQ LQ++ PR++DEL+ AV +++N P+ LN V+L+L + ++M GG N+YK+PH K +L+ G LP L C
Sbjct: 214 KVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTMETKPMLVTKDVTRAYMIEKILPAIKSKWPD-------KMETVYIQQDNAKPHINPKDVEFLKAASSDGFDIQISCQPPNSPDLNVLDLGFFRAIQSLQHQEAPRTIDELINAVEKSFNEFPENSLNNVFLTLQNCMIEVMKVGGGNNYKVPHMGKDKLQNQGNLPTTLEC 424
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI000CD7E6F3 (uncharacterized protein LOC111896598 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD7E6F3) HSP 1 Score: 194 bits (494), Expect = 6.780e-58 Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTI-EITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGC 654
KVMFL AVARPR + N FSGKIGIY FT A+RSS+NR AGT+ TK I + KE + L+EKV+PD+K++ P+ G +++QQDNA+PH+ ND + EA S DG+DIRL QP NSPD N+LDLGFF +IQ LQ + + R +DELV AV ++ R P LN V+L+L +++I+ G N+Y +PH K RLE+ G LP Q+ C
Sbjct: 93 KVMFLAAVARPRFDSLGNEVFSGKIGIYLFTTLEPAKRSSKNRIAGTLETKPILSVNKEVTRSWLIEKVLPDIKTKWPQGHIGP------IFIQQDNAKPHIDVNDSEFLEAASRDGFDIRLCFQPPNSPDLNVLDLGFFQAIQSLQEQEVLRIIDELVDAVQTSFERMPSQQLNNVFLTLQTCMKEIIKVQGGNNYHVPHIGKCRLEREGNLPLQIEC 305
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI000E6FC7BC (uncharacterized protein LOC113359119 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC7BC) HSP 1 Score: 190 bits (483), Expect = 5.440e-57 Identity = 107/219 (48.86%), Postives = 142/219 (64.84%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTI-EITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGC 654
KVMFL VARPR + + N +FSGKIGI+PFT Q AQR+S+NR AGTM TK I +TK+ + L+ KV+P ++S+ PR S + +++QQDNARPH+ ND + E S DG+DIRL QP NSPD N+LDLG+F +IQ LQ R P ++DELV AV E++ LN V+L+ + + M G N+YK+ H K RL + G LP QL C
Sbjct: 29 KVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKAILSVTKDVIRSCLINKVLPAIRSKWPRSS-----NMEPIFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPPNSPDFNVLDLGYFRAIQSLQYRYAPSTIDELVQAVQESFENLSSKNLNYVFLTFQGCMIESMKQLGGNNYKVSHMAKDRLARNGNLPIQLEC 242
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3) HSP 1 Score: 195 bits (496), Expect = 6.680e-57 Identity = 107/221 (48.42%), Postives = 145/221 (65.61%), Query Frame = 1
Query: 1 KVMFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTI-EITKESYKKMLLEKVIPDVKSQSPRPSAGASPEAKIVWVQQDNARPHLVNNDPKIREAMSADGWDIRLVNQPANSPDTNILDLGFFNSIQPLQNRTIPRSVDELVTAV*EAWNRDPQAVLNRVWLSL*AYLEQIMLAGGENDYKLPHGCKGRLEKAGVLPWQLGCKE 660
K+MFL AVARPR + S N FSGKIGIYPFT A+RSS+NR AGTM TK I + KE + L+EKV+PD++++ PR G +++QQDNA+PH+ +D + EA S DG+DIRL QP NSPD N+LDLGFF +IQ LQ + + DELV AV ++ R LN V+L+L +++I+ G N+Y +PH K RL++ G LP Q+ C +
Sbjct: 209 KIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPRGHTGP------IFIQQDNAKPHIDVDDSEFLEAASRDGFDIRLCFQPPNSPDLNVLDLGFFRAIQSLQEQEALSTTDELVNAVQTSFERMQSQQLNNVFLTLQTCMKEIIKVQGGNNYHIPHIGKSRLDRQGNLPLQIECDQ 423 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58587.13347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58587.13347.1 >prot_H-elongata_contig58587.13347.1 ID=prot_H-elongata_contig58587.13347.1|Name=mRNA_H-elongata_contig58587.13347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp MFLGAVARPRRNHSINSDFSGKIGIYPFTQQVRAQRSSRNRAAGTMVTKTback to top mRNA from alignment at H-elongata_contig58587:2792..3463+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58587.13347.1 ID=mRNA_H-elongata_contig58587.13347.1|Name=mRNA_H-elongata_contig58587.13347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig58587:2792..3463+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58587:2792..3463+ >mRNA_H-elongata_contig58587.13347.1 ID=mRNA_H-elongata_contig58587.13347.1|Name=mRNA_H-elongata_contig58587.13347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig58587:2792..3463+ (Himanthalia elongata Himel1 dioecious)back to top |