mRNA_H-elongata_contig58559.13344.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE) HSP 1 Score: 225 bits (573), Expect = 7.760e-66 Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1
Query: 16 SIGSFTAFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRV 396
S+GSF FKAHEFV H+GKTNCV VGP SGQVLATGGDDK V VWRIGRA+SIWSL GN+S IESLRFD TEEFLVSGSAGGAVKLFDLSAGKMTR+FRGHMSNVTVIDCGSFDRRFV TGSMDC+V
Sbjct: 8 SLGSFAGFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSGIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTTGSMDCQV 134
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI) HSP 1 Score: 213 bits (541), Expect = 2.560e-61 Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 1
Query: 16 SIGSFTAFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFV 369
S+GSF AFKAHEFV H+GKTNCV VGP SGQVLATGGDDK V VWRIGRA+SIWSL GN+SAIESLRFD TEEFLVSGSAGGAVKLFDLSAGKMTR+FRGHMSNVTVIDCGSFDRRFV
Sbjct: 8 SLGSFAAFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFV 125
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A836CLK5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK5_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.130e-57 Identity = 95/141 (67.38%), Postives = 110/141 (78.01%), Query Frame = 1
Query: 37 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHNAEV 459
FKAHEFV HS K NCV +GP G VLATGG+DK V VW+IGRAN IWSL GN+S IE + FD EE L SGS+GGAVK +DL+ GKM RNFRGHMSNVT + G+FD ++ATG++DC VK+WN TKEC MAFKGH AEV
Sbjct: 13 FKAHEFVAHSTKVNCVAIGP-HGAVLATGGEDKRVNVWKIGRANHIWSLAGNSSPIECVCFDHAEENLYSGSSGGAVKQYDLTVGKMARNFRGHMSNVTALHSGAFDSAYLATGALDCVVKVWNTATKECVMAFKGHGAEV 152
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A383W973_TETOB (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W973_TETOB) HSP 1 Score: 121 bits (304), Expect = 3.970e-29 Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 1
Query: 34 AFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHNAEV 459
++K EFV HSG NC+ +G + VLATGG+DK V +WRIG+ + I +L G S +E + FD E+ + +G+A G VK++DL GK+ + GH SN I+ G + V TGS+D VK+W++ K+ +KGH+ V
Sbjct: 3 SYKLDEFVAHSGAVNCLRIGRNTAGVLATGGEDKKVNLWRIGQPHVIQTLVGLNSPVECVTFDPAEDKVGAGAANGTVKVWDLDTGKVCCSLTGHRSNCLTIEFGPPESNIVVTGSLDTNVKVWDLRRKDSITTYKGHSRGV 144
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A1B6FE44_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6FE44_9HEMI) HSP 1 Score: 100 bits (250), Expect = 8.360e-25 Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 37 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNV 330
+K EF HS NC+ +G SG+VL TGGDDK V +W IG+ N I SL+G+ + +E++RF+ TEE + +GS+GG +K++DL A K+ R GH S +
Sbjct: 9 WKVQEFKAHSANVNCLALGQKSGRVLVTGGDDKKVNLWAIGKNNCIMSLNGHITPVETVRFNHTEELVAAGSSGGVLKIWDLEATKIMRTLTGHRSGL 106
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A7R9BGC5_9CRUS (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BGC5_9CRUS) HSP 1 Score: 108 bits (269), Expect = 2.230e-24 Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 37 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCG------------SFDRRFVATGSMDCRVKLWNVET 417
+K EF H N V +G SG+VL TGGDDK V +W +G+ N I +LDG+T+ +E +RF +TEE + +GS GA+K++DL A K+ R GH +N+ + S D +++A+G D VKLW++ +
Sbjct: 1281 WKLQEFAAHDANVNSVALGRKSGRVLVTGGDDKKVNLWAVGKPNCIMALDGHTTPVECVRFSSTEELVCAGSLSGAIKVWDLEAAKIIRTLTGHKANIRCVITYKGHSSSVNGVKFSPDGQWIASGGDDAIVKLWDLRS 1419
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A7R9CXC1_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CXC1_TIMCR) HSP 1 Score: 103 bits (256), Expect = 9.640e-23 Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 37 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWN 408
F +FV H NC+ +G SG+VL TGGDDK V +W +G+ N I SL G+ + +E ++F TEE + +GS GA+K++DL A K+ R GH +++ ID + F+ +GS+D ++ N
Sbjct: 280 FGQEDFVAHGSNVNCLALGHKSGRVLVTGGDDKKVNLWAVGKHNCIMSLSGHITPVECVKFGHTEEHVCAGSQAGALKIWDLEAAKIVRTLTGHKASIRSIDFHPYGD-FLTSGSLDTSIRFAN 402
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A482STH4_9ARCH (Katanin_con80 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STH4_9ARCH) HSP 1 Score: 102 bits (254), Expect = 2.140e-22 Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 40 KAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVI 339
+ EFV HS + NC+ +G S QVLATGG+D V +WR+G ++IW+L N S IE L FD E +VSG+ G++K+FDL+ GK+ RN H NVT +
Sbjct: 11 RVQEFVAHSTQVNCLALGSKSSQVLATGGEDAKVNIWRVGSVSNIWTLGQNKSPIECLCFDADELCVVSGAMNGSLKVFDLNEGKLARNLGSHQVNVTSV 110
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A139AEY9_GONPJ (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AEY9_GONPJ) HSP 1 Score: 100 bits (248), Expect = 1.360e-21 Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 1
Query: 34 AFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTV--IDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHNA 453
A + +EF S C+ +G SG+VL TGG+D+ V +W IG+ +I SL G+TS IES+ D EE V+G+ G++KL+DL K+ R GH V ++ F F A+GS D K+W+V K C + +A
Sbjct: 5 ASRLYEFSSDSSAITCLSIGRKSGRVLVTGGEDRRVNLWAIGKPQAIMSLVGHTSPIESVTLDWPEEIAVAGAGNGSIKLWDLDHSKVIRTLTGHKPTFRVGALEFHPFGE-FFASGSADATCKIWDVRRKGCIQTYHNDDA 145
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A804QQK3_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804QQK3_MAIZE) HSP 1 Score: 96.7 bits (239), Expect = 1.430e-21 Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 37 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFK 441
F EFV H+ NC G + ++L TGG+D V +W IG+ ++ SL G S +ES+R D++E + +G+A G +K ++ K+ R F GH S+ +D F F+ATGS D +K+W+ + K C +K
Sbjct: 15 FAREEFVAHTLNVNCAKFGRRASRILITGGEDLKVNLWAIGKPGALLSLSGFISPVESVRPDSSEVTIGAGAASGTIK--NIEEAKVVRTFTGHRSSCASLDFHPFGE-FLATGSSDTNMKIWDTQQKRCIHTYK 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58559.13344.1 >prot_H-elongata_contig58559.13344.1 ID=prot_H-elongata_contig58559.13344.1|Name=mRNA_H-elongata_contig58559.13344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp MTDSVSIGSFTAFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWback to top mRNA from alignment at H-elongata_contig58559:94..2280- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58559.13344.1 ID=mRNA_H-elongata_contig58559.13344.1|Name=mRNA_H-elongata_contig58559.13344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2187bp|location=Sequence derived from alignment at H-elongata_contig58559:94..2280- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58559:94..2280- >mRNA_H-elongata_contig58559.13344.1 ID=mRNA_H-elongata_contig58559.13344.1|Name=mRNA_H-elongata_contig58559.13344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig58559:94..2280- (Himanthalia elongata Himel1 dioecious)back to top |