mRNA_H-elongata_contig58530.13340.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58530.13340.1
Unique NamemRNA_H-elongata_contig58530.13340.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58530.13340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58530contigH-elongata_contig58530:2769..3465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size170
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.0428252-CDS-H-elongata_contig58530:2768..28451622930949.0428252-CDS-H-elongata_contig58530:2768..2845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58530 2769..2845 +
1691679636.8881006-CDS-H-elongata_contig58530:2768..28451691679636.8881006-CDS-H-elongata_contig58530:2768..2845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58530 2769..2845 +
1622930949.0589368-CDS-H-elongata_contig58530:3374..34651622930949.0589368-CDS-H-elongata_contig58530:3374..3465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58530 3375..3465 +
1691679636.8987403-CDS-H-elongata_contig58530:3374..34651691679636.8987403-CDS-H-elongata_contig58530:3374..3465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58530 3375..3465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58530.13340.1prot_H-elongata_contig58530.13340.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58530 2769..3465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58530.13340.1

>prot_H-elongata_contig58530.13340.1 ID=prot_H-elongata_contig58530.13340.1|Name=mRNA_H-elongata_contig58530.13340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
RCSLTQSRVRAARRLPRVVRKASVPRCSRERATACCSSSGKNVSVKTLSY
LYLCA*
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mRNA from alignment at H-elongata_contig58530:2769..3465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58530.13340.1 ID=mRNA_H-elongata_contig58530.13340.1|Name=mRNA_H-elongata_contig58530.13340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=697bp|location=Sequence derived from alignment at H-elongata_contig58530:2769..3465+ (Himanthalia elongata Himel1 dioecious)
AGATGTTCTTTGACGCAGAGCAGGGTGAGAGCTGCGAGGCGGCTGCCAAG
GGTGGTGCGGAAAGCTAGCGTGCCGAGGCAGGTCAGCACAGGGTGGTGAC
AGCGAAGTGGAGTACATTTGACTTGACTTTTACTGTACTGGAAATGTAGT
ATATTCGCGACCTGATAGATTGGGGAGGTTTGAGGCATTGCGCGTCGATG
TTCTTTGATCTAGATCGTTCCCTCAGTCGTGATGGGATTGCGCAATAGTT
TTGCTTTGACATATTCGTGAGGCGCTATATTGGCAAAACACGACTTTTTA
AAGTCGACAAGTAAATGGCGGATTTTGTCGTCTAAAAGAACAAGATTTTC
TTTAAGGGCCTGCTTACAGGGAATGACGCTGATAAGTGCTGATACCTGTG
AGTATTATTACGCGTCTACTACTTCAGAAGCATTTTAACGCATTGTTTGT
CTCCGTATGTGTCACAACAGCGGATAGTTCTCTCTTTTGATGATAACATG
CTTTGCTATGGCAAAGACGGCTACGCGAAGAAGTTGTGCTCTATGCGGTA
ACTCGCCTCCGAAGTTCCAATAGTCAGCTCAGCTCTCATTTTCTGCAATC
TTCCAGGTGCTCACGAGAACGTGCTACAGCATGCTGCAGCAGTAGTGGAA
AAAATGTGTCGGTGAAGACTCTGTCGTATCTGTATCTGTGCGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig58530:2769..3465+

>mRNA_H-elongata_contig58530.13340.1 ID=mRNA_H-elongata_contig58530.13340.1|Name=mRNA_H-elongata_contig58530.13340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig58530:2769..3465+ (Himanthalia elongata Himel1 dioecious)
AGATGTTCTTTGACGCAGAGCAGGGTGAGAGCTGCGAGGCGGCTGCCAAG
GGTGGTGCGGAAAGCTAGCGTGCCGAGAGATGTTCTTTGACGCAGAGCAG
GGTGAGAGCTGCGAGGCGGCTGCCAAGGGTGGTGCGGAAAGCTAGCGTGC
CGAGGTGCTCACGAGAACGTGCTACAGCATGCTGCAGCAGTAGTGGAAAA
AATGTGTCGGTGAAGACTCTGTCGTATCTGTATCTGTGCGCATGAGTGCT
CACGAGAACGTGCTACAGCATGCTGCAGCAGTAGTGGAAAAAATGTGTCG
GTGAAGACTCTGTCGTATCTGTATCTGTGCGCATGA
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