mRNA_H-elongata_contig58489.13334.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58489.13334.1
Unique NamemRNA_H-elongata_contig58489.13334.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58489.13334.1 vs. uniprot
Match: A0A6A6UG16_9PEZI (WSC domain-containing protein (Fragment) n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UG16_9PEZI)

HSP 1 Score: 47.0 bits (110), Expect = 7.020e-6
Identity = 19/41 (46.34%), Postives = 24/41 (58.54%), Query Frame = 1 
Query:    7 QCFCGEATNDPTSLGSAICGLPCDGDSSQICGGH----IFT 117
            QCFCG   +    +  A C +PC+ DSSQICGG     +FT
Sbjct:   20 QCFCGNTISQSQPISEAACNMPCEDDSSQICGGSAALSLFT 60
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BLAST of mRNA_H-elongata_contig58489.13334.1 vs. uniprot
Match: S3D5C5_GLAL2 (WSC domain-containing protein n=2 Tax=Glarea lozoyensis TaxID=101852 RepID=S3D5C5_GLAL2)

HSP 1 Score: 48.5 bits (114), Expect = 2.500e-5
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:    7 QCFCGEATNDPTSLGSAICGLPCDGDSSQICGGHI 111
            QCFCG A +  T L  + C +PC+GDS+Q CGG +
Sbjct:  491 QCFCGNALSTTTPLDDSKCSMPCEGDSTQKCGGSL 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58489.13334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A6UG16_9PEZI7.020e-646.34WSC domain-containing protein (Fragment) n=1 Tax=M... [more]
S3D5C5_GLAL22.500e-551.43WSC domain-containing protein n=2 Tax=Glarea lozoy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58489contigH-elongata_contig58489:2706..2831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.5455828-CDS-H-elongata_contig58489:2705..28311622930948.5455828-CDS-H-elongata_contig58489:2705..2831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58489 2706..2831 -
1691679636.6967728-CDS-H-elongata_contig58489:2705..28311691679636.6967728-CDS-H-elongata_contig58489:2705..2831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58489 2706..2831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58489.13334.1prot_H-elongata_contig58489.13334.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58489 2706..2831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58489.13334.1

>prot_H-elongata_contig58489.13334.1 ID=prot_H-elongata_contig58489.13334.1|Name=mRNA_H-elongata_contig58489.13334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
LQQCFCGEATNDPTSLGSAICGLPCDGDSSQICGGHIFTLE*
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mRNA from alignment at H-elongata_contig58489:2706..2831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58489.13334.1 ID=mRNA_H-elongata_contig58489.13334.1|Name=mRNA_H-elongata_contig58489.13334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig58489:2706..2831- (Himanthalia elongata Himel1 dioecious)
CTACAACAGTGTTTTTGCGGAGAGGCGACCAACGACCCAACAAGTCTTGG
TTCGGCTATATGCGGCCTGCCTTGCGATGGCGATTCATCGCAGATTTGCG
GTGGTCACATATTTACCCTGGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig58489:2706..2831-

>mRNA_H-elongata_contig58489.13334.1 ID=mRNA_H-elongata_contig58489.13334.1|Name=mRNA_H-elongata_contig58489.13334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig58489:2706..2831- (Himanthalia elongata Himel1 dioecious)
CTACAACAGTGTTTTTGCGGAGAGGCGACCAACGACCCAACAAGTCTTGG
TTCGGCTATATGCGGCCTGCCTTGCGATGGCGATTCATCGCAGATTTGCG
GTGGTCACATATTTACCCTGGAGTGACTACAACAGTGTTTTTGCGGAGAG
GCGACCAACGACCCAACAAGTCTTGGTTCGGCTATATGCGGCCTGCCTTG
CGATGGCGATTCATCGCAGATTTGCGGTGGTCACATATTTACCCTGGAGT
GA
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